morexGenes - Barley RNA-seq Database

Contig contig_69083
Source Contig contig_69083
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_69083 (8544 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_69083

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75827	6	1949 bp	MLOC_75827.1	Available	Available	LOC_Os11g01790.1, FRAME:+3, EVALUE:0.0, 13111.m00094 protein protein phosphatase 2c, putative, expressed
CDS Structure of MLOC_75827

Contig Sequence (8544 bp)

>contig_69083 8544 assembly3_WGSMorex_rbca.fasta
AGACGACAAAGGGGTGGGGTGGGGTGGGGTGGTCTCCGGCCGTTAGGTCCGAACCTTTGT
CGTCTGCCTTCAGCTTCTGTGTCATCGGTTGGAAGACGGCAAAGAGGTGGCTGATGGCAA
ACAAGCTCTTTACCATTAGCCAGATATTTACCGTCTGTTTTCTTAAAGCTGACGGCACAG
AGGTTCTTTGCCATCAGCCAACAGACGACAAAGAACTGGCTGANNNNAAATTACTGGATT
CCAGTAGTGGGGGGATATGCAGTCTTTCTTGGTCCTAACTTGGTCGCGTGGAATGCTCGC
AAATAGTCTACAATGTCTAGCAGTAGTACTGAGGTTGAGTACAAGACAGTTGTTAATGCC
ACAACTGAGATTATTTGGGTACAGTCTCTATCGAGAGAACTGGGCGTCTCTCAAGCTCAT
CCACCTGTCATTTGGTGTGACATATTTATCGTCCAATCCAGTGTTCCATGCTAGAACGAA
ACACATCGAGGTTGACTATCATTTTGTGAGGGAACGTGTTGCATAGAGTCTACCATACAA
CAAGTTCATCTCTTCTAAATATCAACTTGCTGACATTTTCACGAAGCCTCTAGCAGAACC
ACAGTCTGTAGGTTGTAGGCACAAACTTAACTTGCTTTGTACCTTATGCCACAGTTACGA
TTGAGGGAGGGTGTTAGACTGTATATATATGTAGCCTCTGTACATGACTTGTAATCTCTA
TCGTACACCTTTGTGTGCCTCTTATATATATGAGATAGCCGAACCCACCAAGGGTGTCGA
GCAGTTTCCTAAACCTATGTTTTACACACGGGTGGGACGACGCACCATAGGAGACCGGTG
AGGCGATTGGACCGCCATAGGGGGCCACCGGTGAGGCTGGAGCGTCGTAGGAGGCTACCG
GTGCGTCGCGGGAGCCGTAGGGCTGGGGATACCCCAACTAGGAGTTGGCATCGGGAGGCC
CGTAGGCCAGCGTCGACAACGGGCCGAAGCCAGGAGGCGGAGACGGTGCGGCGTCGGCCG
GACGCGGCGACGGCGGGTCATGCAGGGGAGCGTCGGGGGCCAGAGCGACGACCGCCGTGG
AGGCGCCAACCACGGAGGCAAGCGGGCACGACGACAGGAAAGGGGAGGTGGCGGCGGCCT
GAGCAGCGTCGGTGGCATGGGTAGGGGCGGGCGCAGAAGCCATCGCGGTGGAGAAGCGAT
CACGGCGGGGACGATCAGGGACACGTGCGGAAGCAATCCTAACCTAGTGTGATGCTATGT
AAACACTTAGGGTTATGAGAAACTACACCACCCCTAATATGATGTGATTCTTTATATATA
GAGGTACACGACGTGTACAATTACAATATACAGTTGCGTACAAAGTTTTATGTAAATATA
CAATCTAACTTGACACAAAGCAAATCGGGAATGATATTCACAAGGGAACAAATGGTGATT
ATGGCACCATCATTTCAGAGATTAAGAATAGGGAGTATAATTGTAAGTTTACCTTTGAAG
GCCGAGCTGCCCATAATGACGGCCATAGGTTAGTCAAGTTTTACAACTTTCTAGATCAAG
GCAGACATGATTGGTTGATCCCTTTGTAACGCCACTTCATGTGGATTTTAAGCACTAAAA
CTTGGTGATACCCTAAAAAAAGCTAAATGTTGATTTAAAAAACCAGTAGCTAGATTTGCT
AAATGTTGATTGAAAAAAAAAAACTAATGCTCAGAATTCATTGACGTTAGAGCGGTAGCA
ATTGCGTTATGGCACTGCAAACTGGCAAGGATTTTCATGGAGAGACAGGTGAGCCTCCTC
TGACGCCCAGCCAGTGAGATGTGCATTGAAGACGACGACGGGCGCAGGAGGCAGGCATCT
CACGTTGGCGCCAACAGCTACAGGCAACAAGAGTTGCTGAGGAGCATTGAATGCGGCCGC
GTCACCACCATTAGCGGCGTCCGTCTCCATCTACCTCCAGGACGGGGCGCCCATGTCCTC
TCGCCATTAATGGCACCCCCGACGCTATAAATGGCAAGATAAACATCCATTCACCCCACC
CTCTCGCTCACGCGCACACACGCCCGCGCGCATTAAACTCTGAGATGCCCATCCCGTCCC
GTGCACCAGTGCCTGCAGTCGCAGGAGCTAGCTAGTTGAGATTTCGCCGCAGCAATGGGG
ATCTGCTGCAGCAGGGAAGGAGGGGGGAAGGAGCTCGAGGAGACGGAGGGTTGGTTCCCG
TGGAAGCACGACGACTTCTTGCAGGAGCAGCTCGCCGGCGCCGCCGGCGTGTCCATGCAC
ACCAAGCAAGGGTGGAAGGGCGTCAACCAGGACGCCATGGCCGCCTGCCAGGTAAGGTCA
AGCTTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTCCCTGAGATTCTTGTGGAAGTTGAAT
TGGCAGCTTTATGCACTAGTTCTAGGTCCATCTCTGGCTCTGCTTCCTTTGCTAAACTGA
AAGCCTTTTGAACCTGCAATACACCTGAGATTCTGTAATCACCATGCATGTACTTCACCA
TCTTGATTGCTCACCATTGCCCTGGATTAGATACATCTCCTATGCACTACTTATAATATA
TTTATTGCTCACCCGTGTACTACTAGCAGCATGAATGCAGCATTAGAAACTGAAATCCGT
GGCAAATATCAGTACGACCTAGCTAGATTAGTATCTTTGTGAATAATTAATAAAGTGGCT
ATGCATCTTCTAAATGGAGAGGCCCGGGGTCATCCTTTTTTTTTGAAAAAAAGAAGCTAG
ATTAGCATCTCCAGCAACTAAATTATTTTTACCAATTATTTTTGTAGTGAGTGTCAACTA
AATTTGTCATACTCGCATCACTAAACTTTCATCGGAAACGTTTGATTTTCCATGGTCAAC
TACCGAACGTTCAGGATTTATCATTTCTGTATATTAGTTGCCTCCATGTATGTACACATT
ACTTGAGACATAAGATAATCTTGATGTGTCAAGATGATCAGGACTTCGCCGGGCACAAGG
GCCAGATCTTCTGTGGGGTCTTCGACGGGCACGGCCCCCTCGGCCGGGACGTCGCTCGGC
ATGTCCGGGACTCCCTTCCGAAGAAGCTGTCTGCCTCAATGGCACCTAGAGCTGAAGACG
ATGCCCCCTCCAGCAACGCAGACGTGGATTCGTTTGACAAGTCGGATTGCACCTCGTCCA
GCGACACCAGCGATGAGCACCAGCTGCTGTCCTCGTGGAAGAGCTTGATCGTGAAGGCGT
TCGAGGACGTCGACGAGGAGCTGAGGCAGCATTCCGGGATCGACTGCATTTGCAGTGGCA
CCACTGCTGTCACCGTCGTTAGGCAGGTAATGGTAACTAGTAACTACTACTGCTGTTGCA
GTTCTTGCTACTGCCTACATTGTCAACATGTCTTTTTGTGTGGTACAACCTCTGTTGAAC
TGCAAAAATGTCTTATATTTAGTTACAGAGGTAGTACTAAAAAAGAGCTGGTGAGCTTCT
GAAAATGCTGGATTATGGAATGTTTATTTCAGTCATAGGTTTTGATCCTACAAACCAAAC
ACTAAGGCAGCATAGCGCCATAGCCAAATTCAGACTGTCACGCTCTTGGCCTATTCTGTT
CTCCAGCTGCTCTTTCTTGATGGTTACCGGTTATCGCTATTGCTGTGTGTATACAGGGTG
ATCACTTGATCATTGCCAATTTAGGCGATTCGCGCGCTGTTCTCTGTGCCCGCGATGGCA
AGAACCGTCCGGTTTCGGTGCAAATCACTACCGACTTGAAACCAGATCTTCCTGGTCAGC
CTCTGAATTTCTCATGTGATACTTTCCTATAGGTCGTACGTGCATTTGTTAACTGCAACT
TGCAATGTATATCTTCTGGACTTGTCATAGGTGAGGCTGAGAGGATCCTGAGTTGCAAGG
GGAGAATCTTCGCCATGGACGATGAGCCCGACGTGCCGAGGCTGTGGTTGCCGGACCAGG
ACGCGCCGGGCCTCGCCATGGCGAGGGCTTTTGGAGACTTCTGCCTCAAGAACCATGGGC
TCATCTGCACACCCGAAGTGTACTACAGGAAGCTGTCTGAAAGGGATGACTTCTTGGTGC
TTGCCACGGATGGGGTAACAAGAGTGGATTTCTTTCTGGATTTTCCTCTAGTTTCATGTC
CATTACATTCCAATCATGCTCCATCTTCCTTTAATTAAGAACAGTTTCTGGCACTATTGC
AACTGAAATTAAGATAACATGCATAGCTCAAATCTTTTATGATTAGACTGAGATATCAAG
CAACTGTTAACTGAAGCGGACTTGTCATCATCTTTATCTCTTCTTATCTAATCACACATT
GTTGCAGATTTGGGACGTGCTATCCAACAAGGAGGTGGTTAAGATTGTCTCGTCGGCCTC
CGACCGCTCAAAGGCGGCAAAGCAGCTCGTGGACCGGGCGGTTCGCGCGTGGCGCCGCAA
GTTCCCGACGTCGATGGTCGATGATTGCGCCGCCGTCTGCCTCTTCCTGAAGCCAGCAGC
CATTTCATGTGAGGAAGACAGCACGACCAAGCCGCCTCAGGCACCCGTGCTGTCGTTCAC
CGGGAGTTTCCGCAAGGCTCTGAGCGGCGGCGGTGAGGCGGAGGAGGGGACGGCGGTGTG
GAGGGCGCTGGAGGGGGTGGCTCGGGTGAACTCGGTGATCCGGCTTCCCAGGATGCTGAG
CCGGCGGTGGCGGTCGGCGTCCATGGATGAGAACAACGACCACGAATCATCCAAGGTTGA
TTGACTGATCGATTCATGCTCATGCATTGCCAAACTTAAAAGGATAATGTTTCAGAACTT
GATTGATAGTTTCATACATCGTGTTCGCGCATTCAGGCTGTTCAGATTGAACATTAATTC
GGTTGGCATGTACGTACGTACGCTTGTTGGGTTTGGTGCGTGTTGTGGTACCGATTAGAC
AAGAGACATGACCCAAGTTTGTAATGGATTCAGCATTTTATAACTCAAAAAATGAATTGG
CGCCAGTTTTTTTTTTTTCTCTTTCGGAATGATTTGAAGATAGCTGACCATGACTGCCGC
ATGGTATGAAAATGAAAGGGCTTGACGAAATCCGGCAGGCTGAGCACCGAAGCACTTTTT
TTTTTTAAGTTTCAGCCTTGCTAGGGATGTCATTGATAGCAGAAAGCAATGGGAAAGACA
AAGTGATGTGAAGATCCTAGGATCGAGGGTTGTTTGATCACATGCCGGTCAAACTTTCAA
AGAAAGAAAAAGAAGAAGAAGAAAACAGAGACAATTTGATATCTCACGGAGGTTGAAGGG
GCTCTCAATGCATCTAGCTCTTGCTAACCTCCATTGCTCCATATGTCGTTTGTGATCCTT
GCGATAATGTCTCTGATCCTTGGGTGCTTTTTTTGGAAGGTGCACTGATTGTGCTCTTGC
CATATCGCCCAACATACGAGAAGTCTCATTGTGTTGGTTCCCTTCTTTCATTTGTCGGCG
ATCCGTAATTTAGAATCTAGCAAGCATCTTTTCTGGACTTGCCCGACATTGCAAGAGGTA
TGAAACAAGATCAGTCAACGGGAAGGATGTGCCACTCTCAAACCACAACCTGTCTTGGAA
CATTAACCCCCAACTTCACAATACACGGCGCCCACCCCTTCCATATGAGCTTGTCGAAGC
AGGAAGAAACTCCCCCTTGGAACTGCATGGAGTATGCAGATCTTGCAGAGTAATGCCTAG
ATTTTTCCCTGCGTCAGAGGATGTGATCCGGTGTGTCCTCCTGCAGCTGAACATCTAACC
CTTCAAGTAGCCTGTGAAGGTAGACGCAGTCTTGAACAAGCAGTCCGCAGTAATGAAGGC
GGAGAGCAAGTGGTGCAGCGGGTCTATGGCTATGATGAAGAGGAAGGGGGAGAGGGGGTC
TCCCCGCCTCAGGACGCATCTATGCAGAATCTTTTCACCTACAACTCCGTTTAGCAGAAC
AGCCAAGGATGCGGATGACAGAAGGAATGCGACCCAGTTCCTCCATCTAGCGCTAAATCC
TAGCTATTGCATCAACTCTAGGAGGTATTCCCATGATACTGTGTCGAACGCTTTTGCGAT
GTCTACTTTCATCAGCATGGTCGGGACCTTCCTACGGTGCAGGGAGCGAACTGTATTTTG
CACGTAGAGGTAGCTGTCGTAGATGCATTTGCTATGCTGGAAGGCCAACTGCACGGGAGA
AATTAACTGGTGGATGACCACTCCTAGCCTAAGAGATATCACCTTGGATATTAGCTTCAC
AATCGAATGAATCACGCTGATAGGTCTAAAATCATGCACTGTCTTCGCCTCATTTTTCTT
GGGTAGCAGAACAACCGAGGCTTCATTGAGCCTTGCGAAATCCCCTCCCGCCAGGTGGTA
GAATTGATCAAACACTGCCATGATATCTAATTTGATAGTATCCTAGCAACATCTGAAGAA
GGATCCATTGAATCCGTCTGGCCCTGGTGATTTATGTTGTGGGGAATTGCACATCGCGTT
CCACACTTCTTCCTCCGTGAACGGGTTGTCTAGTACGCCTGCCTGGAGAGATGGCAGCTC
TAAAGCGTCCCAGTTGATGCGTGTGTTCCTGTGCGCCCTATTGCCTACAATAGAGAGAAG
TGCGCATGGAAGGCCAAAGCTTTTTCATTGTGGCTGGTAGCGATGGATGTATGCGTGTGT
AGAGAGTGTATGAAGTTTTTCTACCGCCTGGAATTGATCTTAGCCTGGAAGAAGGTCGTC
TTGGCGTCCGCGTCCCGTAGACACGTTACGCGGGAGGCCTGTCGTCTACGTGCTCTCTCG
ATGGCCGTCGGCCCCATGTTCCTAGTTTTCAGAAGTTTTCGGAGGTTGTGCTCTGCTAGA
GAGAGGAGCTTTCTTTCGTGAGCCACGTCAAATCGAAGGACGGTCTCGGTCGCTAGCTGC
AATTGCAGCTTAGTTTCACTGCAGAAACTTTTTGCCCAAATCTTCAGGTCCCTAGCTACC
TGACACATTTTAAAGTCAATGTGTTTGAAAGCACATGTGGAGGCCACCGGTATTTGCCAC
GCCCGCAGGACTGTTGATTGGAACCGCGGGAACTTCGGCCAAAATGATTTGAATCTAAAC
CTAGCCGGCCGGAACGGTGCCCTTGATGGCCCGCGAGGAGGAGGGGGCAGTGATCTGAGC
AGGAGGTCGAAGTCGCGTGCAGGAGGTACGAGGGGAAGAGGGAATCCCATTGAGTGTTGC
ACAAGAACTTGTCAATGCTAAGCATTGTTGAGTCTTGCCGCTCGTTGGACCAAGTGTATT
TGCGATTTTTACACTTTATCTCTCTCGGGCCCGACGAGTCTAGTGCCGCCCTAAATTTCC
CTATCATTCTTCGGTTGATGTTGGGGTTGTTTTTTTCACTCGCCTTGTATATCTGGTTGA
AATCTCCGTTTATGGTCCATGGTTCTCTGGTCGGGGGAGCCGAATTTCCCAGCTCCACTA
AAAACGCATCTTTGAGTGAGTCTTCTACGGGGCCATAGATGGTGGTAAGCCAGAAGCTAA
TGTTGCACTGGAGCACCTTAGCTCTAACGGTGATGGAGAATTGACCAACCGCATGCGAGA
TGACGTTTACAAGACTCTGGTCCCAGAAAATAGCTGGCCCCCTCTTGTTCCAAATGCCAG
AAGCACTGTGCAGTCGGATAGCCTGCTACCTCCAATGTCTCGCACCAAAGTTTGGTTCCA
GATTTCTAAGTTAGTCTCTTGCAGGCATAGGATAACAATCCTATGAGATTCTACTGTATT
TCTGACTACTTCTCGCCTCGATTGGTTGTTTAACCCCCTAACATTCCAACTCATGATGGA
GAGGTTGGTTTCATCCATTGGGCAACTTAGATAGTCTCCGACAGCTACCATATTTGAGAA
GGAAACACGGGTACACCTCCGATCTACCGAGGGACTATCGGCGGCCACCAATAGGCCCCA
AATCCCACCGGCAGTCAGCCACACCTCTAGAGCTACAACTTTGACTACACATAGGTAGGT
CTAACATGATCCATCCTAACGTCAGCCGTCTTTGGAGACGTGTTAACACTATCATGGTAG
ACCTGGGGCCTCCATGGCTGCTTCGTCGGGTCCGCCCATGCCAGCATCGATCTTGAGGGC
CTCCACATCCATCTTGGTGAGCCTTGCGATTGCCTCCACGACAGCATCGGACAGAGGCTC
GTCGAAGCGCCTGATCAGGGCATGTGCCGCTTTTGCTGTCATCTTCTCCTTTGGTCCAAG
GATGTCGAGGCCATGAACTAGGTGTAGCATGGCCCTCTGACTGACCGAGACCGTCGATGG
GTTGGCCGCCTTCCTGATGCTCTGTCTTGTCGGTGTGGGGTTGGCCTTGTCCTCCTTGGG
GTCTTGCTGCGCGGCGGTGCTTCCCCGACGACAGGCGATGATAAGTCGATGAAGAGCTGC
GCCGGGTCAACAGCGCCACTTGGCTCATCCGCCTAAGGTTCGTCGCGTGGAATGTCCGGG
CCACCCGTGTGCCTGATGGTTACCGCCTCCTCCGGCTGCGCGGTTTGCGAGTGGAAGCTG
AAGCTGTTGGGGAACGTCGCATGG