morexGenes - Barley RNA-seq Database

Contig contig_6898

Source Contig contig_6898

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_6898 (2834 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_6898

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75800	2	419 bp	AK356167	Not available	Available	None
MLOC_75801	4	629 bp	MLOC_75801.2	Available	Available	None

CDS Structure of MLOC_75800

CDS Structure of MLOC_75801

Contig Sequence (2834 bp)

>contig_6898 2834 assembly3_WGSMorex_rbca.fasta
AAGTTAAGACAGTTATTTTGGGTCGGGGGGAGTACTCCATAATCTTCACTCCTACAAAGA
TGTCCACTGGTAACAGTAGCCCTTTCACCTTTTGACAGTGTGAAGTATTACCTCCGTCCA
TAATTACTTGTCTTAGATTTATCTAGATACGGAGTATGAACCATCAGACCTGGATCAAAC
TTCCCTCAAAAAGACAAAAAAAAAGCTGGATCGAACGGGTCCACCTCTCTCTCTCTCTCT
TTCTCATCTTCGTCAGCAATTATATGCTGCCCCTGACCCTGCTCCTCCTTATTGGCACAT
CCTTTCCGCAGGATGTGCAAAATAATATATTACCTCCGTCACAAATTAGTTGTATCTAAC
ACTAAACCGTGTCTAGATACATCCGTATCTGGACAAATCTGAGACAACTAATTCGGGGCA
TAGGGAGTATGATGTTAGTTTGCAGCAACTCAGGGATAATATCCTAGTACCTGGTACCAT
TAGATAAGTTTGTCTGGGCTATTTGCTTCGCATCTCGCACATAGACATAGTGAAGCATGC
CTGAAGTTGACCCAGTTTGTCTCCGCTTTGATCGGTAAAACTTTGAGTTCTGACGAGGCA
TATGGAGCCATATGGACACATGGCCAAGGAGGCGCAGCTTCTCCGAAGACATGAACCGGT
CACCATCCACCACTCGGTAGAATCATACTGACCTACGTAACAAAAAACCATGCTTTCACA
GCAGCACTGTAGAAACTTCTGCCGCCCCTTTCGTCTCGCCGGCAGCTGGTCACTGCAGCA
CGTGGTGGTGAATTGGATTCACGCGCGCCCGTCCCGGTCGTGGACCAACAGCTGCTGGAT
CTATCCATGTACTGCTGTTAGGTAAAACCACTGGCCGCTGCACGCTCAATAGAGCATGCG
GGCTGCAGCTCACAGCCCAACACATGCGAGGCAAGTTCCAGGCCTAACCCGTGTTCACTT
CTCTGCTGCCAGATGGGAAGATGTGCGAAGCTTTTGCACGTTCTCTAAAGGGTAAGACCT
GCACATGAAAGGAAGGCTCACAGCCTGTGGCGAGCCAAAGATTGCTCTGTATGTACAGCC
CATTCGAGATTTACGTGTAGACGTTTTCAGAAACGAAAATATCTGTGCAGGAAGTGTTGA
CTCCTGTATGTGGTTTCCTTTGCTTGCTTGCTGAGCTTTGCTTTGCATTGTACGCAGGGT
GCCGTGCATGGCTTGGGCGGACTGTGTCACGAAACAATCAAATCTCTTGTTTGTTGGCGA
GAGATCGGGCAAAAGCGGCAGTTCTCTCAAGAAATTAAGCGCGTTGAGCGGGGAGAAGAA
TGACCTTACGTGTGGGTGTGGGTTGTCATGATTGTACACTGTCAGTTTTACTCTCGTCTT
GCGTCCTTCTTTATATTAGCGAGTGATTGCTTTACCTTTTGTTTTATACTGTAGTATATA
GCATGGCGTGATATGTTTTGTTTTTCTATAGCAGCTTACCACATATAACATGGCCTTTTG
TTTATGATAAAATCGTAGAGACTAGAACATGTTTTCTCCAGTGAAAATCCATGGATGTTG
TTTATAGAATGGAAATCTCGTGGAGACTTTGCCTAGTTCTTTTACACTGTCGGTGATTTT
GTGGAAATCAACGCACTCGTTTGAACAACAGAAAAATCCACACGGGCCTGTTTGATTCGC
AAGGTATCAAAGACATAATAAAAAAAGAATAAACAAAATCAAAATGTCACACACTATTAA
ATTCTACTCCCTCTGTCATACATCTAAATGTGTCATAGTTATTGTACATCTAAGAAATTA
AGTAAACATAAAAAAAATCATACGAATCTTCGCGTAAGATCAGTGATATAGGACTTAGAT
ATGCAACACTTATGACATATCTAGATGTGTTTTAGCAAAACTGATAAACTAATATAATGA
TCTAAAACGGCATACATTAGTTTAGAGATAGTAGTATATGATTAGAAAACTACTACACGA
TTAGCATGAAATAGTGTTTGACGCACCACAGTGAAAATAAAGTGAACAGACGACCTGCAT
AGACAAAACTCAGGATAAAAATTATTTATGTGAAATTCATTTGAACCAAAGGACCTAAAC
TCTAGGATGCATTAGAGGTTTGGTTACGGCAGACTGGTAAAGAGGTCTACTTTTACGGAT
GGAATACATACATACATACACACATTTATTTAGTGTATTGTTTTGGATGGCGGAGTGAGT
CACACACCTAGCTCGAGTGGAAGGTGATGTGGCGACATCAGCGGGGCACACACGTCCCCA
CACACACCGCCCCCTGCCCACCCTTGACACCACTCCACTCCAAGCAGAAAACAGCAGCAA
ATTGATTGATAAATAAAAAAAAAGTAGACGAGGAGAGAGAAACCTATGGATAGGATTCCA
CAGATTCCCATCGAGATCGAGATCGAGGCGGCCGCGAGACGGCAGGGATCCTGCCCGTCC
CATTCCCCCCCTCTCTCCCCTCGCCCCCAGAAACGGAAAACCAGCCCAGCGGCAGCGTGC
CAGGGGAATAAAATCCTAGTCAAATACTGACGGGGAGGACGAACATCACAGCAGCAGAAA
TCCGGCCTTGTGAAGCACGGCGCCGTCCAGCCAGCCAAGGTAAGAAGAAGAGGATGACGA
GAAATTTCCTTTCCGATTTCATTTTACCAGCAATATTAATAATACTAATAACCAAGTAAC
TAAAATATCTATCTTTGCGTTTGATTGTTGCCCTTGCTTTGCTTTCACGTCATTCTCCGG
AGGGAGGGAGTAGGCAGACAAGCAACGCAACGCAAGAGCGCTCCGCTCCGATCCGATCCC
CTGTCCGCCCGCCC