morexGenes - Barley RNA-seq Database

Contig contig_6890
Source Contig contig_6890
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6890 (7692 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_6890

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75772	1	422 bp	MLOC_75772.1	Available	Available	None
MLOC_75773	1	667 bp	None	Available	Available	None
CDS Structure of MLOC_75772

CDS Structure of MLOC_75773

Contig Sequence (7692 bp)

>contig_6890 7692 assembly3_WGSMorex_rbca.fasta
ACGCGCGCCATCAATGTTCTAGTAAAGTGAAAGATGTACTTGGATGGAAGCAACCAACCA
ACATGACAGATGTAAGAAGTTTTTTGAGAATGGCCGGATATTACAAGAAATTTATTGAAG
GCTTCTCCACCATAGCCAAGCCCTTGACTCAACTGCCCAAGAAAGATAATAAATTTGAAT
GGAGTCAAGCCTGCAAGAAAAGTTTCCAAGAACTTAAAAAGAGGTTGACAATTTCACTAG
TATTAATTGTACCAAATATACACAAAAAATGAGGTATATTGCGAGGCATCCAGGAAAGGT
GTTGGTTGTGTGCAAATACAAGAAGGAAAAGTTGTAGCCTACACCTCAAGACAACTGCGA
TGTCATGAAGAAAATTATCCTACACATGACTTGGAATTAGCAGCGGTAGTTCATGCACTC
AAGGAATGAGGAAATTTCCTTCTTGGTAGTCACTGTGAAATATATACATACCACAAAAGT
ATCAAATATACTTCCGCACAGCCGAAACTCAACTTACGGCAACGTCGTTCGTTCGAATTA
ATCAAAGATTATGATGTGGGAATTCACTACCACCGGGTAAGGAAAATGTTGTAGCACATG
CTCTCAGCCGAAATCAGAGTCCAGGCAGGAGCATCCTGCAATTTTGAAGACCTGGATTCA
AACGGGAGTTTGCTAAACTCAACATGATTTTGGTTCTGGAAGGCAGGGTTGCACGTCTGG
AAATACAACCCATATTGAAGGAATAGATCAAGAAATCTCAAAGTGGACACCCCAGCTTCG
GTATAAAAAGGAAAGTAAGCATAAGCAAGGCCTCGAAATTTACCATTGACGATCAAGAAA
TTTTATGGTACGAAGACACGTTGTGCGTACCTAATCAAGAGCACCTTAAATAAAAAATCT
TGTCACAAGCTCATACCACACCATACTCCATCCATCCGGGAGGAACTAAGATGTACAAGG
ATATTCAAGAAAGATTTTGGTGGCACGGCGTGAAAATGGATATAGCCTCATTCATTGCAC
GTTGTGATTCATGTCAGCGCATTAAAGCCGAGCATCAGAAACCAGCAGGACTACTACAAC
CACTCAAGGTACGTGAATGGAAATAGGATGAGATAAGCATGCATTTTATTGTTGGACTAC
CCAGGTAACGACAAGGAAACGATGCCATCTGGGTCATCTCTGACTTATTAACTAAAGTGA
CACATTTTATTCCAATGAAGACAACTTACTACACACACAAGCTTGCCAAGCTTTATCTCG
CTCGGATCATCTGTTTACATGGAGTCCCAAAGACCATAATGTCATACAGAGGCACACAAT
TCGTCTCCATTTTTGGGATTATCTACAACAAGCCTTGGGAATTAAGCTGGTATTCAGTAC
AGTGTGTACCATCCTTAGACTGGAGAACAAACTGAACATGTAAATCAAATATTGGAAGAC
ATGCTAAGGGCATGTGTCCTTACTTGTGGAGCCAACTAGGAAGACAACCTTCCATATGTC
GAATTTTCGTATAACCGCAGTTATCAGGTCAGTCTAAAAATGTCACCTTTTGAAGCATTG
TATGGACGAATATGCCGCACACCACTTAATCTGTCTGAGACGCAAGATAGCTGTATCTTT
GGCCCAGAAATGCTCCAAGAGGCCGAGGGAAAGGTTAAACTCATCGGAGACAGACTCAAA
GCAGCCCAGGGCCGTCAAGGAGTTATTATGATCAGAAACATCATGACATCAGTTTTGTAC
CCAATGAATATGTTTATCTCCGAGTATCCCCTATGAGAGGTCTCCAGAGATTCAAAGTAA
AAGAAATATTGGCACCACGGTTTATTGGGCCTTTTCGAGTAATTGCAAGGAGAGGCAAAG
TTGCGTACCAACTAGACCTACCTGCAGAATTGTCTGACGTCCATGACGTATTCCACGTAC
CACAGCTAAGGAGATGTGTCAGTAACCCGGAAAAGCAAGTACCACACGAGAGCCTAGACA
TTCAGCCAGACCTTACCTACCGAGAGCTTCCTATAAAAATATTGGAAGAGTCTGAAAGGA
GTACACGTTAGAACGTGATCAAATTATTCAAAGTTCAGTGGAGCAACCACACCGAAGATG
AGGCAACATGGAAAAGAGAGGATTTCCTACGGACTGAATATCCACACCTGTTTGAGGAAT
AGCTGAAATCTCGGGGACGAGATTTTTCCTAAGGGGGTAGGTGTTGTAACATCCCAAAAA
ATTTAATTTGGTTTAACAAAAAAATTATTATTTGAAGAGGGTTATTTGGATTTATGGTAA
AACTTTTCTTTCAAAAATCTTATTGGTTGAAAACCCCTTGTAAAAAAAATCACAATCTTG
GTTCTTGACTTTCAAGATTTCAGATTGTGTTCCTTTGAAAACAAAGGTTTTCTAAGGTTT
TATATTTTGTTCTTATTAAGGGACCACCTTTGGAATAGAATCCAAATATTTTCTTTTTAA
AATCTTTTGTCATCTCTCGTGCTAAATCATATTTCGAAATATTCCTCTCTAATATTTCTT
CCCTGCCCCAAGACAGCAACCACCTCATTTTCATAAAATCTTTAAGCCCCTCATATATTT
TCTTTTACTAAAATTGCTTTAAAACAATTCCTGTATTTTATTCGGATCGCTGGGATTTTT
CAAAGGGACTCGTAGATGCCTTGCTCTTTGGACCTCAAATAAATTGCCCCAGCTAGTCCT
TAGTGCCTACAACAAAATTATCCAAAAACCTCCTGGTCTTTAGTTCAAAATTTTCAAATT
TCATTTGAAGGAAATTTGGACCAGATTTATCTTTCTTGCTGAAAACCATTCTTCCTCTAC
TACAAAAATTCTGAGTAAATTCATGGAATCCCTAGATACTTTAGTAGATCTCCACACCAA
AAATCAGCACAAGGAAAATTTTGTAAATGCCATTGGCATTTTGCCGAGCACCTGATGTGC
ATGGTTTCAGTTCTTGGTCAAATCAGCACAATCTCAGCAGTGCTCCGGCTTGTTCCCTTC
TCCCTCTTCATCAGTGCCCTCGCCAGAACACCGGAACATTTTTTGTCCACCTCTAATTGT
CACGGTGAGCTGATGCGGTCTGCGCCGTCCTCATCCACGGCAATAGGGACGCCCGCGGCG
GCCAGAGGAGATCTTCTAGACGTTCGGCACCGTCCAGCACCGCCCATCGCTCCTAGAATC
GCCGTGTGTCCGCCCGCAGCAGCAAGCACAGCTAGTCAGTCGTCGTGGCCCGTTCATGGA
GCGCAGCGACTGCCGTCCGTTCGGGTCGTTCCGTCGACCCTCGGACTAACCTCAATATTG
GCAACGCGTTTGCAGCCAGAGCAAGCCATTGATCACCCCTAAACCCCTCGCGCCACCGTA
ACGCGCCGTTCAACCCCCTGCCTCGTCGTTCCACCGCGTCGGAGTTATTCGCTCGCGGCC
ACCTCGTCAAATCGCCTATAATAGGCCCCCGGAGCTCCTCCTCCATTCCCCTCCACCACC
CGCATAGAGCCCCAATCCCTAGCTAAGACCATCAGGGCCTTCGTCCTCGTCTCCGGCCGC
CCGATCCACAACGGATCCGGGGTTAAATTCGTCAGTGGTAGCCTGCTTCCTCTTCCCAAA
TCGTGCTCTTAGTCCCATAGTGTTCCCACATCCCTGACCCGCGTGTCAATTTGACGTTTG
CAGGTCCCTCCGATGAGCTTCATCTTCCCCGTAGTCGGTGATCGCCGGAGTTGAGGCTGC
CAACTTTGTGGTGCTAGCTGGCGACCAGATCCACCACCCACCGATGAGTAAGAAGTCCTT
GAGCACGCGTGCATCCATCTCGCCCTCTGATTCGCCGTCGATCGCCGCCGGTAATCTCCG
TCACCCTCTGCCCATCGCCATATTCCAAATCTGACGAGTGGGACCCCTTGTCAGGGTTCT
TTCTTTTTCAGTCAGTTTCGAGGAAGCGTATTTCCGCGGGTTACGTTTTCCATGTTGGCC
CGTAACTTTTCCCCGAAGCATTTTCTGCTTTAGCAGTCTATATCCTGTGGATATTTCTCT
TTTCATTATATAAAGGTCCCTGGCCTTACTTCTTTCATATCTTTTAAACCAAAAATGATT
TGGCATTGATTCTTTTTCTGAAATTTTTCTTTTTCAGTCTATTTTTTGTAGTATTTATTT
AAAAATATTTTGGGACAACTTTTTATGCATCCATGGTATTTACATAGATATCCCGTATTT
TATGGTATAAATAACAAGGGGGGAATAATGCTGGCAATTTCGGAGAATTGTCTTCCGACA
ACATTGATCCCGGCAAGCATGTTTGAACCTTCGATATCATGATTGCTGTCATGTGTGCCT
AACAAATTTTTGTTGCATGTAGACGCGGTAGTTATAACATGGTTGTTGTGTTGCATGCAT
GAATGCTTTGCATATGAGCTACAAACTTGAAAAGTTCATGAAGTCTGAGACCTAATCACG
TGGTGACGTGATAGGTTGTGGCCTGGTCACGTGTTAACGTGATAGGTTATGGCCTGGTCA
TGTTGGAGCATGCTAGTATGTTAACAAGCTAAGTAACTCCGGTATCGGCATAGATCGAGT
CTTGTCTCCGTGCTACCTTATTTTTTCATGCTGCCACATGTTTTTCTCTAAAGGGGATAC
AATTTAGTAAGTTGCAAACCTATTTCCATGTACACACCAAATAGAGGAGTCGTGATGACA
GTTTCATGGCCTTGGGATAATGGCAATCATCCGGTTAGGGAGCATGGGTGTTTTCGGCTG
AGCCGGAGAGGGAGGCACCCCTTAGTTGCGCGCGTTATAAATTTTATCCCATGTCATTCA
AGATGCCGGCCTCCTCGTCTTATACTTTTTTTCTAGAATGTTGCTTTGGATGATTTTCCA
AAGCATCGTGAGGTGAAATGAATGTGTACTGTTTACGTGTGTTTACTTCCAAAATACCAT
AAGCGAAATTATTGTTTCTTATTGGAATAACCTATTTAGTTGAATGACGCTTCGAGTATC
ATTTGGAATGGTTTTACCACCTGAATACCCGCATTCTAATTTTTAAATATAAGCCTTTTA
TGTGGTATCACCGAGATGTCTGACTCTAATAGTTTATACGTTTAACCTTTCGAGGCATCG
CTTGGGACACCCGATGAGTGTATTTTATTTTCTATTTATCTTTTCAAGACATTACTTCAG
ACATTCGATTGGTGTATTTTATTTTCTATTTATCCTTTGGAGGCATCGCTTGAGACACCC
GATTGTTATATTCTATTTTTTTGTTTATCCTTTCAAGACATTACTTCAGACACTCGATTG
GTATATTTTATTTTTTATTTATCCTTTCGAGGCATCGTTTTTAGACACCCAATTGGTCTA
TTTATATTTGTTGGAAATTTCGGGAGTACCGCTCGACTTTTCCACCTCATGCATTGTTTC
ATTACACGGCTTATTTTTTATATTTGATGACTTTTCCACCTCATGCATTGTTTCATTACA
CGGCTTATTTTTTATATTTGATGAAATGTTGCATTTAATCTACCCTGAATATGTGCATTC
TGTCTACATTCAGTATGTCTTATGTCCAAATTGTCTTGCGAGTACATTCAAAGTACTTAC
CTGGCTTGTTGATTTGGACAAATATTAACGAAGCAATTTTATAGATGAATAGTAAGTAGT
ACTACCACCATTTTCACTGTCAGATATCCGCTTCTATAAGATATATTGGCGTGTTTGTAA
TAAATTGTTAAGCAACCTGAGCTCACCCATGTATAATATTAAGCACTACTGAAGTTCTGT
ATCAAGGATTGTTTATCATTGTGAATTTATTTTTGTACTGGGATGACATTAAGGGCTATT
TTTTATACACATTTTATTCGGAAACTGGTCCTGATAGTGCCCATTTGCCCCTGAATTGCA
CGTTGCGCCACTAAAGTGAGCATTAGAAATTGTAGCTATGCTTGCAGATGTACATTTAGA
ACATTGTTTTGTACTTTTTAGCTAAGGATTCAACTAATGTTCCTTTTTTGACAAGATTTC
AGCATTTCAATGAAGTTTTCAGCTTTTATAATTGATTGTTTCAGTGCTGAACGGGACTTG
AACATAACCATTAGATACATAGGGCTAACTTATATTAAGAAACTGTGCTTAATTTTGTAT
TTTCGGTAGTATGTAAATGTGCACAAGGTTCAACCTTATTGCAGCAAGAGATACAAGGAG
CACCAGGTAAGTAGTACTACCACCATTCATTATAGTTTCATATACAGTCACATGTGCAGT
GCGTTTGGTTTACTTGCAAGTACAAGTCAATAGAATTTTCAACTCACGCTGTTAGAGCCT
GAAAAATTCAGCAAGATAACCAATGAACTGGAAGTGTTTTGGGTACTTGCATGGTTGAGG
AAGAAATTTTGGTTATTCCTAAATGCCTATTGCAGAATGATACTAATGATTCACATCTAC
CCAAGCTTGAGGCTCAAATTCAACACTTAAAAAGTTATTGATACCTTTGTTTCACAGGCT
AAGCTAAATCAAGACGACCTAATTAGTGACCAACTACTACCACCAGGATGGATATGAGAA
CCAACAATTAAAAAAAACATCCAAAATTGCTCCTCAGACCATAATAGGAACAAATAGTTT
TTCCTGAAGAACAAACCTGTTGGTTCAGAAGATAGTACTAATTATACTGGGAGCATAATA
GGATGTGTCCTTTTAAAAAATGGGCGATGGCCATTTCTTCAGAAAAGAATTGTGGAACAG
ACCCTTTTAACATAAGGGGTGCAAAAATAGAAATGCAGATCACGGCAACAAAAATGTACA
TACTTGGATAATCAAATCAAATGGGTATTTGTAGAGGCATAAACAATCAATTGAAATGTC
CGTAAATGAGAATTCAAATGCATGAAGTGATGTTGCAGTTTAGATTATTCTCGTAGTATT
TGTGACAAGTTTGCATTCACATACAATGCATTTGAGCCATCTTATGTATTAGTTGTAAAT
TACATATCATCGGCGTATGTGAAATGACTTTATCACAACCCAAGAACAAAATGAAAAGAG
AACAGCAAAACTCAACTACATCTACAACTGTAAACCAATAGACATGTCACATATGGTATG
ATAGACCCAACCAAATTTAGCACCACAGGGTAGGCAATGGTGAATGGTGGATAAACCACA
GGGCACCAATATGCTCCACACTAGCAATCATCACACTGCAACTGTCTACAGCAACAGTTT
CAGACACATCTAGGGATGAAATAACACATGTATCTAAAACAAACCAACCACGCAATCACT
GGGATGAACTGAATTATAATTGCAAGTGACAAAGATCACACACATCAACAATCAACATAT
CATAAACCAGCAGTAGCAAAATATTCATCCACATATCAAGCCATGCATAGCTATTGGCTA
CTAACACCTGCAATAAAGGGTTAAGCTCAAGAACACTTGTATCAACAAGATATATCCCAT
GATGGCATCAATCAGAGCAATGACAGCATAGCATACGGAACAAAACTTAAAGCTCGCATC
ACATCTCAGCAATAGGCGATCAAATATCCAGGAAACACAACATATTACTCCAAGGTTTCA
GTTTTCAAAGACAAACTGGACACATAAATGAGTTCTATTCGCGATAGGTAAAAGAGCAGA
GCAAACACAGGCCAGCTCTAAGCCTTCTGGTTGTAGACATAGGTGAGTCCGCACTTGCCG
CAGTAGTGGCGG