morexGenes - Barley RNA-seq Database

Contig contig_6854
Source Contig contig_6854
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6854 (7730 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_6854

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75658	2	1645 bp	MLOC_75658.2	Available	Available	LOC_Os02g50760.2, FRAME:+2, EVALUE:0.0, 13102.m05760 protein heat shock protein DnaJ, putative, expressed
CDS Structure of MLOC_75658

Contig Sequence (7730 bp)

>contig_6854 7730 assembly3_WGSMorex_rbca.fasta
CCTCTTCCCCCGCACTCCTCCCCCGCCGGCGTCTCGCCCCCGGCTCCGCCGCCGCGGACG
CCCGCGGCGGGTGGTAGGCGCGCGCGCTCCTCGCCGCCGCCGCCGCTGCTGCTGCTGTAA
GATCTGAGCGAGCTGCTGCTGCTGCCGTGTGGGTCCGGGGGTAGGGATACCGTGTTTGGA
GGGCGTGGAGGCGGCGTCTATGGCGGGCCCCAAGTTTGGGTCGTTCAAGTCGGAGACCAA
GGGGGACTCGGCGGCCGGCGCCGCGGCGCAGAGGAGGGACCCGTACGAGGTGCTGGGGGT
GGGGCGCAATGCCACGGAGCAGGAGATCAAGAGCGCCTTCCGCCGCATGGCCCTCAAGTA
AGTCAAGCTCGAGGATTTGGCCTCCTGCTCTTGCTGTGCTCCTCACGAGTCAGCCAGCTT
GCCAGGATGGTACCAACTGCTAAAATTCGTGCTGGGTATAGCGTATTTCATATGGAATTT
GCTCCTGCTACGGGAACATTAGCTGATTCTGGATGAAATTGTCGCTTCTCGCAACAACAG
AGGCACACAATTTCTTGGGACCTTTTTTTTAATCGCTTGTTAAGACCAGACCAGGATGTC
TATATAATTCAGTAGCTCTCAGCTAGCTTTTTTAGTAGTAATGGTTTGACGAAGGGCAAT
AATGCAGCGGCTTGAGTAATTTTCTGTTTATACGCTTGTCCTGAAGGTACCATCCAGATA
AGAATGCAGACGACCCTGTGGCCTCGGAGAAATTCCAAGAAGCCACATTCTCTTACAACA
TCCTCTCAGATCCGGATAAAAGGCGGCAGTATGATTCCTCTGGATTCGAGGTGATCTGTG
CTTTGATTTCAGTAGTTTGATGAGTTGCTTGTTTTTCTTGTGACTAATGCTTTTCTTGCC
ATTCAGGCCATCGAAGCAGATAGTCATGAATTAGAGCTGGACCTATCAAGTCTCAACACT
GTAAATACAATGTTTGCTGCTCTGTTTAGGTAGCTTGTTCAGGACATCACTCTTTTGTTC
TCTAATATCTGTCTGGTTATGACTTATGAGGTTATGTACTGATAGTTGTGTTTGTGCAGC
AAGCTAGGAGTACCAATCAAGACCACAGTTTCGGCAACAGTTTTAGAGGAGGCATTGAAT
GGCTCAGTGGAAATTGCTCAGCTTCATTTGGGCAAATCTGTATGCAAGAAGGTTGGCAAC
TATCCGCCTCGTTTCATCTCCATGCATTCTTTTTGTCGAGTGAGTAACATTTTAGATTTA
ACACATTGGCAGGTGGAAAAACAATCAGCTCATTTTTATTCAGTGGACATAACAGAAGAA
GAAGCTAAATTGGGGTTAGTGTGTAGAGTTAGTTCAACTGCTAAAAGTAAATTCAAGGTT
AGTTGCAAACTCGCCGTTAGCATCTATCTGTCCTGTTCATTTGACAACTTAACTACTCCA
TTACATTACTTTGGCTGAGAAGCTTTCCCTTCTGTTACTTGTAATGTTGCACTTGGATAA
GTCAACCAACCTATCTGTTCTTTTCTGGTTAACTTTTTTGCATTCTGGATGTTAAGAAAT
TTGTGGTGATATGTGCACCATTTCAATAAGACATATAACTCTTTGTTTATCATGTCATTG
ATAATCACATTTCAAATAATCACGTACACAGTACATAGTATTTTGTATTATTGCACTGCA
AGTTTAGCAAATTTTCAGGTTTCTTCCCGTGAAAAAGTTCTTATTTCTAAGGCAGGTTTT
TTCCCTTTCAGTTGCTCTATTTTGAACCTGAAGAAAATGGTGGGTTAAGCCTTGCTTTAC
AGGTACGTTTATCTGGCCTGTCATTTATTTGTCCGAACAAACATAATTTGCAGCATTTTC
TTCTATTCATTATTTCAAGGCGTCCTGCTTCGAACACTTCGGCGGCAAGGCGCCCTGGCA
GCTCCTTCCAATTTTGCCAGCCTTAGGCTCCTAGTGTTGCTTAGGTGTCAAGGCGGTGGG
TGCTTGCTTTAGGATGCCTTACCGCATAAGAACACTGCTTCTATCTGTAACTAGTTTGTC
GCCTGCCAAGCGTGAATTTTCAAAATGCATGATTTGTTTCTTGCCATCAGCTTTTTATCT
TTTCTAAACCTCCGCTTCTTACTGAAAAGGGTGTGTGTCACATAGTCCAGAAGACATTCC
AAATCATGGTCGTTGGGTGCATTATTTCATGTTTCTCTGTAATTTGTATTTATTGCACAC
AATTATGTTTCATCACATCCCTCCTTGTGTTAATGCTTCCTTATGTGAATTTTTGAACTT
GAGCTTGCATTGCAATACTTGGAGCTTGTGAAGCCCAGAATCTCTGCTTTGTTGATACGG
TTGGAACTTCCCTCACCTTGGTATAATTAGGGAACTTAAAAAAATGCATTTTGCTAATTC
ATGTAAATATCAGATATGTCCGCCAGCATCATCTGAGGTTTAGATATGGACTGTATATCT
CTAGGGACACCAGCTATAAACTGCTTTCTGCATAATCTTACCAGGAAGCTGCGTTCTGTA
AATGTCCTGAACCTTAACAAAGTTGTGATCCTATCCCCATCCAGAAGTTTAGTCAAATCC
AGGCATTCACACAGATGTTGCTTTCTTGGACCTAACCAGATCTGCTAGTGTGATGGGAGT
AATCCCAGTTTTGTGTCGTGACAATTGAATTGCATATAATATATTGGAAGTATGCTTGTG
TTAGTCCATTTTTTTCATTTTCAGTGTGCTAGTTTTTTAGGCTTTGAGCATTATGTCAGC
TGATATATATCAGTCTGTTGCAGGAAGATAGTGCAAAGACCGGGAAAGTTACTTCTGCTG
GGATGTTCTTTCTTGGCTTTCCCGTGTACCGTTTTGAACATAATAATTCAGTGAGTATAC
AAATAGTGTCTTGTTGTCTATCCTTTTGTTTCTTTGTTGGGTTGCCTCTTTACAAGCTCC
AATTATTTCCAGGCTGCTGCAGCAAAAGATCCTGATAGTGCATTCTTTAAGAGATTGGAT
GGCTTTCAACCATGCGAAGTTAATGAACTGAAAGAAGGGACCCATTATTTTGCTGTTTAT
GGTATGCCACTTTATGTTACTTCCTGTAAAATTATCCATGGCAAACATGTATTGGCTTAT
ATAAAGCATCTGCTCTATTAGGCGATAATTTCTTCAAAAGTGCAACCTATACCTTAGAGG
TTGTATGTGCTGAACCCTTTTCCAACGAAAAGGAGAAGCTACGAAGCGTGGAAGCAAAGA
TACTTGCAAAACGGTCTGAGCTGTCTAAATTTGAGTCCGAGTATAGGGAGGTATGCCCTC
ACCTTTTGCTTATTCTCGACGGAAATGGCCTTTTAAGTGAAAACACATCATTGTTAAGAG
TTGAATTGGCAGGTTTTAGCAAAGTTCACTGAGATGACCAGCAGATATGCTCAAGAAATG
CAAACGGTACGTGTATTCGTGGAACATCTGTTTCTGTTCCTCGCCTTGTTCTCACATCAT
GTTCTTGCATAGATCGACGAGCTTCTCAACGAAAGGAATGCCATTCATGCATCCTATACC
AACAGCCCAACGCTAAAGCGGAGTTCCAGTGACAGCAAAGGGAAAACATCCTCTAAAGGG
TCCAAAAGTGATGATGACCAGAGTGTAAGAAAAGATAAGAAATCAAAGAGTCCGACGACG
ATGGAGGCCTCAGCGAGCGATGAAGAGGGCCCTAATAAAAAAGAAAAGAAACCTAAAGAG
CGGCTTCGCAGGAAGAGATGGTTCAACATCCATCATCTGAAAGTGGACAAAAGAAGACCC
TGCTGAGAGATGTATTGTATCGTCTGAATGTATTATTTTGTGTTGATGATTCCACCTGCA
GTGTTCACCTTCTCTAATCTTTTCCCCCTGTGCTGTACCGATTTGTTTCCTGAAAAGTCA
GGAATCTTGGTAGATTCGGAAATGTTGTAAAGAATTGGTAACATTTGTACTGAAGTACTC
AGCTAGTCCTACTCTTATTTGCACATTTGGTCTCACGCAGTCGTGCTGATGTCGAAGGCA
TAACATTTGAATCTGATCTCGACCCCGATGCTTTGGGCGGGTTTCGGTCGTCTGTCCTGC
CTGCAGGGATGCCAGCACCAACGGCGTGATAAGCTGAAGCCTGAAGGCACCTAAATGTCC
TGCAAAACACCTTTCAAGCTCTGCTCCATTGCTGGATGAGCTAGCCACCAGGCTAAGTGA
TCTTTTTTAACATGAAGATGCATTATCTGTTATACATATATAGTTGTCTTTAAAAAAAAA
TCATGAATTTATAAAATGTCCATGAGTTGTTTTTTAAAAACGTTCATTGATTAAAAATGT
TCATGATTCAAAAATAAAAGTTCATGTCTACAAAAAATGTTCATGATTTTTTAAAAAACA
TTCAAACATATGTCTGAGAATTAAAAAAAGGATTTTTTTAACAAATATTCACTAATTCAA
AAATATATTCATGAATTAAAAATAGTTCGTCACAAAAAAAAATGTTTATCAATTTCAAAA
TTTGTTCTCAGATTTCAAGAAATGTTCACCTATGCAAAAAAAACTTGTTGACGAGTTAAA
AAAACATGTAAGCAATTTCAAAAACTGTTCGTGAATTCAAAAAATATTCATGAATTTATA
TAAAAGTTAATGAATTTAGAAAATGTTCTCAAGCTACAAAAATATGGTGAACATTTTTCC
AATTTGATGAAGAAATTTTAAATTCAGAAAATGTTCACCCCAATTTGTAAAAGTGCTTAC
CGATTTGGGAAAAAGTCATGAATTAAAAAACATTTGCAATTTCAAAAGTTATGTATGTAG
TGGGTGCATGGGGAGCGGTCTATCCAAAGGTACGCCACATACATTTCAAGGCATATCACA
ACAAACCGAAAAAGTTATATGCAACCCAGATGATTTTTATACAAACCGGAGCGCATTCAC
TACATTCCGGATAATTTCCGTAAAAAGAAGGACCGGGCCTAAACCTAGCGTACCACGGCG
TCCGTCGTCCAAGTCCTTGTTGTTTCCTTTCGGCCACCATGTCATCCATCTGCCTTCTCC
ATGAGCGTCGGGGATAAGACCCGCGAAGTGAAGGTGCAATCGCCGGTGAGGAAGAGTAGA
ACATGGGAGACGGACCGGCCCACTTGGGACTCGAGGCCCAACCGCGTCCCATGCCCTACT
CATCCTCGTCGGAGTCCATGACTTGTCCATTGCTGGTGGACGTGAGATCGATGATGGACA
TAGACGGGCCATCACTGTCCTCCTATTAGATGCAACCCCCGAATTATCAGTGGCTACGCA
TACGACGCGTAGCTGGCGGCATTCTCATCCTTGATCGCCCGCGCTGCCTCCACGTCCGGT
TGTGCCGGATCTGTGTTGCGAGCACCTGCTTGAGCACGCGCGACATCATAAAGCGCCCAC
TGCACGACCAACTCACTTGCGCGCTCATCGTAGATTTGGCCCTCCACCAGCCGGTGTTGC
TCGAGGACGAACAAGTTGTACCGTTGTTCCTCCTGCGCCTGCCGGAACACCGACATAGGC
AGCGGCAGGTTACTCCTTTGCCATGGTCGTAATGAACTACGCATGCGCCTGCTCCTTTGT
CAAGCCGACATGCACCGGTGTGGGCTTCGGCGCTGAGTCGTCGCGGGAGCGTGTCTCCAT
CGTGGGGCCGTCGTCAGAGACATCGGGGAAGATGGTTGGCATGTCGGCCTCGATCCGCCG
GGCACTACAGCTCTGCCAGGCGGCCACAAGGGCGGCCATTGCTTCTACTGAGTTGAGAGT
ATCTCCCATGAAGCATTCCCGCTCGCTGTCAAGGCACATGTGGTGCACGAGAGAAATATT
TGCAACAGATGTGTTGTGGTGTGTTGTGAGCTTGGTGTGTCCGCCTTTAAATAGCGGATT
CTCGTGAGGCCAAGCGTCCGGATGCGTCAATGTGCGGGCGCCGGAGTTGGTTCCTCGTTT
GGCGAGCCTATTTAGTGACGGGAGACGTGCAAACAAGCATTGAACGGGCACAGTAGATTT
CTGCCCCATCCCGTCAAATAAAATTCTCCCCGACATTGTACATGCACGTACACGAGGGAC
GCGACGTGGGTGGTTCCTTCGTCTGGCGGGCAACTCCAATGTCAGCGCGAGTGAGAGGTC
ACGTCTCGGCGTGAATGCGGAGCGGCCGTTCTAGAGTGGCATGAATGCACACAACTGGTT
TCAGGAGGGAAAGCACGCATGTAGGGAAGAGCGTGTTGGGTGGGCCACTATTGTCGGACG
CAGGTGTGACAGCGGCCCGGACGCCCGCAAAGCTCGCGAGTATACGGGTTTGTCTCTTTA
TTAGATTTGCCATTTTTATTGATTAAGAAGAACATAATTGCCTGGTTAATTGGCGGAAAA
CCGGGCTAACACCAATACAATACACAACCCATATGACACGGGCACCACCGGTCAACCTAG
TCACCGACATGGGACCCGAAGCTGCAAAGAAGAAAGACATCCGCCGTGAAGTCGCAAGCG
TCATCGTCATCATTGGTTGCCTTGAACGAGCGTCTCCGACGTCACCATCGAGCTTCAACA
TCGAAGCCATCCCGCAAACAGCTGCAAAGAAACCACGAATGCACATGTCACCGGATGACC
ACACGCGCGAGCAGCCGACAACTCCGACCTTGACGACGAGTATCACAATGGGAAATATGC
AGTACTTGTGTCGCCCATGCCCTTCGCAAACGATCACCGAGCGCCCGTCATTGTCACCAC
CTGGACTCGCTCCACCGCAGCTCCGACTTCAAAGCAACCAAGCAACCCACGAAAGACCAC
CTCGGACACGCTGGAAAGAACCGACTACCAAAGTCCACGCCGCGACCCGAGGTCCTCTCA
ACACCATCATCGTTGCCAAACAGTAACCAACATCCCACCTCACCAACCATGTGACGAAGA
TGCCGCCATCTATGTCGAAGATGCTGCATGCCACTAGTCTCCCAGGCATGGCCGGCTCCG
AGACAATGCCCCCAAGGAGGAGAAAGACGCGAGGACGCCTTCATCACCCGACCCAAAGGA
TGTGAGGTTTCCCTCCAGAGCCCAAGCCGCGGGGACGAGGAGCACACCTCTACGATGATG
CTTCCAAGAAAGATCACGACACCCGCGTGCGCCGCCGTTGTCGACTTCGATGGAGACCGG
AGCAAAGATTTCTCCCAGAGTTGCGTCGAACACCTACCGCCACCGACTGCCGCCCACCAA
CCAACAACTGCCGAGGCCGACCTCATTCTGGTCGCAGGATCCCACGATCCACCACGGCCA
GACACAAACCACCACTCTAGCCGAAACCGCCGTTCACCACCGCAACACCATCGCAACCAC
CACCACAACAACAACTAACGCACCACAAAGAGCACTACCTAGATCAGAGAACCACCAATG
GCCAGATCCAAATCGGAGCCACTCGAGCGACGCAACAGAATAGACGACCATGCCCTCCAC
CTCAACACACCTTGAACTCCGGAGACGCATGCCCGTCGTGCCCCACCAATCGTCACGCGT
GCCACGCGCGAGCCGCCGCCGCGCTCGTCCATCGATCTATGCACCACACACACATATAGG
AACCGCCTCGACCACGTGCGTCATCCACACCGAGGTCACGGCCGGAGCTCGGACCGAGGC
CACCGCCCCAATGCCCACACCCCCTCAGCCGGTAGTCGTCGCCAAGCACCGAACGCCGAC
AAAAATCCGCCGCCTGTCGTCAGGGGATCTGTTGGGTAACGTAGCATAAA