| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_6852
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_75653 |
2 |
3439 bp |
MLOC_75653.1 |
Available |
Available |
LOC_Os05g24550.6, FRAME:+3, EVALUE:2e-144, 13105.m02508 protein Papain family cysteine protease domain containing protein, expressed |
CDS Structure of MLOC_75653
Contig Sequence (5077 bp)
>contig_6852 5077 assembly3_WGSMorex_rbca.fasta
CGGGAACCAATTATAAAACGGCAGCGTGGGGGCAGGAGGAGAAGCAAGGCAATCAATCAG
TACCAGCTACCTCCTCCGCTTGCTTCCTCCTCCCTCCCACCGTGCGTCGCCGATCGAGGA
CGAAGATGGGGAGCGGCCTGCTCCCGCTGGCGCTGCTCGTCGTCATCTCCGCCGCCGCCG
CCGCCCCCCAGGTCCGGCCCTTCTCCTCCGGCCGAGTCGAGATCCCGTCGCCGCCGCGCT
CTTGCTGGCTGCTGCTTTCATCACAAGTCAAACCAGAATAACGCTCGCATATCCAAATTT
ACTGTACTGTATGTGTGGTAGCACTATTAGGAGCTTCCGTTATTATTCTTATTATTCTTA
GAAAAAAAATCCCAATTTGGTAAGTTGCGTTTGCGTAGATATTATTATTAGTAGTAGTAC
TGTAATTCTGCGAAGCGCGAATCCACCCCGGACGAAGGGGCTGCGACAGAGCCGTGCTGG
AGCTCGATGGCGGGCCGACGTCGGAGGGGCCTCTTCCTCTGATACTAAGCTTGATGCCAA
CACTGAAAAACGAACAGCTCTGAACCAAAGTTCGATCCTTTTCTTTCTATGGGGGGCAAA
GAATCAACAGCGATGCTACGCAGTTGGCTGAATCACGTCTGTGTTTGCTTTAACATATGT
TTGTTTAATGCGCTTGCAGCTCGCCGGAGCGGCAGGGGGAGGCCATTCCCTAGGAATCAT
CCAGGTCGGTTTTTTATCCCCATCAGACTGACATCATCTTCTATTGTCTGTACTTTGTAG
TACTACAGTACTAACCATCGTTTTACCTTACTGTCGCAGAAAGGCATCATACAGACGGTC
AACAACCATCCCAACGCCGGATGGACGGCTGGACACAACCCCTACCTCGCCAATTACACT
GTATGTACATATAACACCCTCTTGGTCTTGTTGTTGCTGTCATGGAGGCACCATTTTTTC
CTTCTCTGTTTTCTGACCTCGGAATCATCGTCTTCCGTGCAGATTGAGCAATTTAAGCAT
ATGCTGGGAGTGAAACCAACACCTCCAGGTTTACTGGCTGGTGTTCGAACCAAAACTCAT
CCAAGGTCAGAGCAGCTCCCAAAGGAGTTCGACGCCAGGTCGAAATGGTCCGGTTGCAGC
ACAATTGGGAAAATACTTGGTAAGTTCAACTATAGATAACTCAATGACCATGAATGGGTT
GTACGTTTGTTTTAATTACACTGACCCGCTTCATTTCCTCCACTTTTCTCCAATACCTTG
GAAAACGCTGATTTCCATGAGCAGATCAAGTAAGTCTGTGCACACTGCCTTATATTTTTA
GCTCCACTAGTGCTTACTGAACAGTTGAAGATGCTCAAGCTAGTCTGTATTGGTTAACAA
TGGCAGGGTCACTGTGGTTCCTGTTGGGCTTTTGGAGCTGTGGAGTGTCTGCAAGATCGT
TTCTGCATCCATCACAACATGGTGAGTGCATATGGACGATCTGTCTACTCTCAGGTCTAT
TTTTAAACAGGCATATTTGGTCCTTTTCTTACATAACCAACCTGCTGTTTCTATTCCTTG
CAGAACATTTCACTTTCTGCCAATGACCTAGTGGCTTGCTGTGGGTTTATGTGTGGTGAT
GGTTGTGATGGAGGATATCCTATCAGCGCATGGCAATACTTCGTCCAGAATGGTGTTGTT
ACTGAGGAGGTATAGCTAACTCTCTACTTTCTACCACTTCAATGTCATGATATTCCCAGA
TCAATCCTATTATTATTATTTTGATCATATTATTATGAATCACTTCACTGTGTTCTAACT
ACAACAGTGGGTATTACTGAACTGTCATGACAATATAATGTTTCTCTAAAAGAATATAGC
AATATAATGTAAATTGGATGCTACATTAACTATTAATAATAGTGCCTTCTGTAAATGGTT
TGTGAATACATTTTTAACAGCTCAGTTAGTGCTTGTATCATTTGGCACTAAATGCTAACA
GTGTATAACTGAACCCAAAAATCATGGGGAGCAGGAGCATCTTGTAGTCTTAGTGTGTCC
TGACTTTCTGCAAATTTGTCCCAACTTGGTTCAGGCACAACATTACAATACAAATGACTT
TATTTCTAATTTGGGAAATTCTGTTGTAGCTTAGGATACAACATGAAGTAGAAGAACCAT
CACAAATATTTCTGCTTGATCTTTAAGAAAGATCCTCTGGAAAACAAAGAAAACCTAGCT
GAAAGTGTCTGCACCTATAGGTCGTCTTTGTCTAGCTAGATTTCTTGGATTTTCTCTTTG
ACTAGGGCTCTCCCATTATGTTTCTTGTAAATAAACTCTGCTCAGCATACCACTAATCCT
TGTACATATTACTGTCTTGCAGTGCGATCCATACTTTGATCAGGTTGGCTGCAAGCATCC
TGGATGCGAACCTGCTTATCCTACACCTGTGTGTGAAAAGAAATGCAAGGTGCAGAACCA
AGTTTGGCAGGAAAAGAAACATTTCAGCATCGATGCATACCAAGTAAACTCTGATCCACA
TGACATCATGGCAGAGGTCTACAAGAATGGCCCTGTAGAAGTTGCTTTCACAGTTTATGA
GGTAACTTTGATTCTTCTTTTGATGTTTGACGTGTGTTTTGCCAAGGCTGTCAAAATATT
GGTTAGGCATGGTGGAGTATGGACCAAAATTTAATAGCTGTAATAATTTGAAAAGCTATA
AATCTGAATAAAACCGTAGAAAGAACATGACAGTAGAAGAAAGAGAAACAAAACAAACAT
TCTATAGTTAGCATAGTAAAATATGAATACTGGTATTATTTTTCAAACACTGAATTTTCT
CAACAGGTCATATGCTTTGTGATTATATATATAAGACTATGGATTCTATCATCAAAGGTG
AAAGAAAATATTTGTTACTCGCTGTGCTGATTCATTCTGCAATTTCCTCCAGGACTTCGC
ACACTACAAGTCAGGAGTGTACAAGCACATCACAGGTGGCGTCATGGGAGGTCATGCCGT
CAAGTTGATTGGTTGGGGAACCAGTGATGCTGGCGAGGATTACTGGGTATCTTGTTAATT
CTCTAGATTACAGTATTTATTAACCAATGATCAAGTCCTGACATGTTTTCTTTTTTTGTC
TTCTGATTTTCAGCTTCTTGCAAATCAGTGGAACAGAGGCTGGGGTGATGTGAGTGTGAC
AAATACCCTATATTGTTGACGTGCAATAGTGAATGCTAGTAGCATGCGTTGGGCTACAGA
TTAACAAGTTTTGGTTTGTGATGCATTGTAGGACGGATACTTCAAGATTATAAGGGGCAA
GAATGAATGTGGCATCGAAGAAGATGTTACAGCCGGTATGCCCTCGATGAAGAACATCGC
CGGTAGCGCCTTTGCAATGTGAAGTTTGAGCAGCGCCTCGTCCTCTGATGCAGCTGGAAT
TAGCTATTTGCCTGTCAAATTAAGCGGGCAAACTAGCATTGATGGTTCCAGGACTATGTA
TTCTGTGCACTAGCTATGGATGTGCCCGTTAATAACAATGAAGCAGTTTTTTTTTGTTGA
AACTACAATGAAACAGTTATTATTAAAGGATATGTGAATGAAAAATAATTATCCGTTTCA
ATTGGCAAAAATGAAGCCGAGCTTTGATCATTCACGAAATATGACGCACCCACGAGGCGA
GTCAGTTACTCCCTCCATTCCTAAATATNNNNNTTTCTAGAGATTTCACTATGGACTACA
TATGGATTTATATCTACATATTTTAGAGTATAGGTTCACTCATTTTGCTCTGTATGTACA
CTCTTCGTCCAGTGAAAAGTGTACATATAGAAATTTTAGGACAAATTATGAAGTGGAGTA
AAAAATGCATTGGAAAGGTGCAAGCCACCATCTCTCACTTCTTTAATTACCCAACCCCCA
ATTAACTAAGTGCATGCATAAATTAAGAAGACTATGTGTAAAATGCTATTGGTCTTGATT
ACCGTGTGATGAGAGAGAAGCATTTTTTTTCTATTTTAAAGTGCATTGGGAAGATAAAAG
TACTCTTTTATGAATAAATTTTGAAGCCAAACGTACACTCTTCACCGGATGGAGGTAGTA
GTTCATAGTGGAATATCTATAAAGACTTATATTTAGTAACGGAGGGAGTAGTTCTCATGC
TTTAGGGAGGTGAGGGAGACAACCCCTTATATGTTGGTCTCAACACCCCTCCGCTCCCAT
GTGGTACTAAATATTGTGCCTATGCCATGCAACACTTATGAACCTTCGAGATTTTCAGAA
TTTAAATGTTTAATGTGCCGAGAGCTCCATAAACTTCAACAAAAACCTATGTAGTGACAT
AGGGGATGTGAACTACATTGGCAACATGAACTATGACAGCAATACCATTAGCAATATGTT
AGAGCATCTTCAATAACATGCCATTATGTTAAAATTGCATTACATATAGGAGAATTTTGC
TCTTCTCCGACATAGCTTTCCTAAAGATGCTTATACCATGTTCTAATTGCCTATATACCT
CTATTGTGCACATTTTAAGCGAATAAAGGAATTCATCACGATATAATTCCAACAAATATG
AAAATGTTGCTCACATACTCAATACATTTCAAAGCCACAAATTTTGGAATTCAAATTCAA
GTTAAACAAGCATAATTCATCTAGAAGATAGGTCTCACAACTCGCAAGACAAGTTCCAAC
AAAATCAACTGGCATAGTTCAGAATTTAAATGTTTAATGCGCTGAGAGCTCCATAAACTT
CAACAGAAACCTATGTAGTGACATAGGGGATGTGAACTACATTGGCAACATGAACTATCA
CAGCAATACCATTAGCAATATGTTAGATCATCTTTAATAACATACCAGTATGTTAAAATT
GCATTAGGTATACGAGAATTTTGCTTTTCTCCAATATAGCTTACCTAAAGCTGCTTATAC
CATCTTCTAATTCCCAATATCCCTCTATTGTGCACATTTTAAGTGAATAAAGTAATTCAT
CATGATATAATTCCAACAAATATCAAAATGTTGCTCACATACTCAATACATTTCAAATTC
ACAAATTTTGAAATTCAAATTCAAGTTAAACAAGCAT
