morexGenes - Barley RNA-seq Database

Contig contig_6828

Source Contig contig_6828

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_6828 (1705 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_6828

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75587	3	1064 bp	MLOC_75587.1	Not available	Available	LOC_Os01g07110.1, FRAME:-1, EVALUE:2e-28, 13101.m00710 protein BRCA2 repeat family protein, expressed
MLOC_75586	1	724 bp	MLOC_75586.1	Not available	Available	None

CDS Structure of MLOC_75587

CDS Structure of MLOC_75586

Contig Sequence (1705 bp)

>contig_6828 1705 assembly3_WGSMorex_rbca.fasta
GCGCGGCTGTTGGAGATGCTCTCAAGATTAGATGACCCCAGGTACCTAAATATATTTTAG
GTAAAATACAAAAACACAGGAACATGCCGAAACGTGGCCTCAGGACATACCAGCAGAAGT
GCACCGCACAAGCACAGTAGTACCTTACCATGATGATAGTACACGCCGGCGGCAGCCAGG
TTGCTGCCAGGGACGTCTACAACAGAGACACTAGCGCTCACGATCGCTTGGGAAGCATAA
AAGGCATGTTAATCCCCAAATGCTTTGTCAAGGTGATCCTTGAGAAAATGAGGTGTGTGC
AACAAAGGCTCGTTGAATTGACATCAGAGATAATGAGGGTAGGGCTCAAACTCCAGGAGA
GTGCTTTTTTTTTAACACAAGGAAGCCGCCAACTGACGGCAAGCTATCATTCATCTCATA
TGCAAAGTACAGTGTGAATTACATAGCCCTCCATTTGGAAGTTATGGGGATGAAGCAGAG
AAGGGCAAGATCCAATGCTATGAGCTGAATGGGTACAACCTAGGACAGGTTCTAATCTAG
AATTGAGAACCTGATGAGCACCTTTGTGGGCAATGCCGTTGCTGTTTCAGGGGATACAAT
AAACAGCATGATGTTGCGGATGAGTGTCTTGAAAGAAGCTGCTAACTGCAGTTCGACATC
TCCATGCTATGCTGCTGATGATGATGTTCCTGGAAGCGGACATCTTCATGCGCGAGAGAG
ATTGTCCGTAAGGAGACCTGCTGAAGTTGAAGGGTGCAAGCAATCTTGGCTGCCAGCTGA
GGAGCCAAAGATTCAGCAACAAGGTGGGCGTGAGCACCATCAGTCAAAGCCTGAACCATA
ATTTTCCTGTCATGTTCGTCTCCTGGTTGATGTATATTGATTCCAATCCATGTGGCTGTC
ATCTTGAGTATCCAACAAGAGCTTCTCAGTCGAGGGTAATCGCATTTGTTCCACAAGTGT
CAGCTGATCTGTAGTGCTCTGCCTCACAATCTCTGCAACACAGGTATTAATTACTAAACA
TGCAGTTGGCAAATATGGAGAAACGATTAGGTAGTTATGGAGAATTAAAAAGAATCCAGC
TACAAACAGTCTGGCCTGAACTTTGTACCTGTAAAGTGCATAAGCATAATAAATAGGTAT
CTTTGTTACGCCGATATCGCTTCACTACCAATGGGCATCCAGTGTGGAGAGTAAACTCTG
CACAACTTCGAACATTTTCTTACATTACTTCCAAAAGCAGCAGCCTTCATTATCCCATAG
TACGTCAGCCACCGCTATCACCAATTATGCATAAAACCCTTTCCTTTAGCTGCTGGATTT
TCTGACAGGGGTCATTCATATTGCAGCACAACAGTGAGTTACGGTAGATCAGAATATCTC
AAAAATGAATGTGATCTCTAATCTGAAGAAACTTACATCAAAAGAACTTGAAGCCCATTT
CTCAGCACGTGTTGCAGCTTCCTTAAGATGCGATTTTTTTGAGATCTCATGGGAAAGAGT
ATATGTAGAGCTCGCTGTTGCCTCAGCTACCCAAATGCGCCTCGTCTGGTCCTTATGCCG
CTTCACCAAATTACTGAAACCAACCTGAGCAACAGAGATACAGTAAACTAAAGTGCACTT
GTATTTATAAATGTGTTAAAGTTGAACAATGAAGTAAACACCACTTTTTTTTGGCTGGCA
ATGTTGGAACACGTCGCATGCCCGT