Contig Data
morexGenes
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Map Locations of contig_68222 (5847 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_68222

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_75562 1 460 bp None Available Available None
MLOC_75561 1 692 bp None Available Available None
MLOC_75563 3 1820 bp None Available Available LOC_Os01g51130.1, FRAME:-1, EVALUE:3e-40, 13101.m05327 protein transposon protein, putative, unclassified
MLOC_75560 1 463 bp AK376281 Available Available None





CDS Structure of MLOC_75562






CDS Structure of MLOC_75561






CDS Structure of MLOC_75563






CDS Structure of MLOC_75560






Contig Sequence (5847 bp)

>contig_68222 5847 assembly3_WGSMorex_rbca.fasta
AAAACGAAGGCAGCTAATTGTGAGAGAAGTCGGTCTAGTGATTGGGTGTTATGCTTACAT
GATGGTCATGTTTAGAAGGGCTAGACAACAAACACCGCGGATAACCGTGGGCAGCATGGC
CGATCGTGCCATATCTAGAGAGTCTAATTGATGTTAGTTGATGCTTGTTGAAACTATCCC
TTTTGGTTATGGTTATTATGTCTGATGTAATATGAATCTACTCGTACACTGCTACAATTT
ATGGTTATTATGTAATATGAATCTACTCGTGTACTATTACAAATTATGTTATTATATGTG
TTATGTCAATTGTTGATTTTCTCGTCATGATAATATCTTTGTCGGAATTGTTCCCTAAAA
TGTTGATATGTTGTGTCAATATTGTCTTGGCGTCAAAAAATATATTCATGCAACCTAGCT
CAGATACATGCTATCAAACACAGTCTTGACATAACATGTCTCGTTTGATGCAGCCTACCA
AACACAGTCTCAGTTCAACATGCGTCAATACATACACTGCTACCAAACAACTGCAGTTGC
ATGTACTGAGCATGTTTATACTCAACATGTCTCAAATGGGAACAACTAGCATAGGATGGG
AACTGCTTCCAAACACACCCTAAGTATTTCCAAAAAATAACTTCATTTTAACTATTTTGT
TTCCCGTTGAAGCCAGGCATCCAAGGCTCCAAGCTTCATTTGTTTTTATGTTTTCATGGA
TGCAAACGGAACAACTTTCATTGTACGAAAGCATTTTCCAATGATTTGTTATGTTGCTGG
ATGGCAGGCTGTTGTCCAACTTCTCGGTGAGCTTCTCGATCGTGTCTGTCCTCACGGGCA
TCACTACGTTATATGGGACCGGTCTCCAATTCGGTGGGCCGGTGACCATGGTGTACGGCT
GGCCAATTGCCGGTACCTTCACCATCATCGTCGGCCTAGCCATGGCCGAGATCTGCTCCG
CCTACCCTACCTCCGGAGGACTCTACTTTTGGAGCGCCAGGCTCTGCAGCGAGCGACGTT
GGGGCCCCTTCGCCTCCTGGCTCACCGGATGGTAAGAGCAACTTTAACGGATCGACTTAA
ACATATAATGTTTTTTCTTTTTTATTTATTGTGTCGTCCGTCCGTTTAGCGTCCATCTGA
TTTATGATTTGGTTCGACACTACGTCCAACACGTCGACCTAAATTTACCCGTGTGACCGG
CTTGCCGTTGTTTTTAAACAGATATGCACATATTTTTTCATAGTTTCAACCAAATCAAAA
TAGAAAGCATGGTTTCACAACCAAATAAATTTAGATAGTTTTACAAGTCAAATAAAAATT
AAATTTGTCTCAAATACATGTAAAAAAAGATGCATCTATTGGTTGTCAACATGAGCCCAC
ATATGCTCAGCCAAATCATTTTGTAGCTACATGTGAGTTTTTCATTCACGTATTTTATGA
TGAAATTGTATGAACTGTTCAAACATTACCGCTACTCCATGCTGAGGCACAACATTCTCA
CCCTGAAGCTGAAACCCTTGATCGTAGAGACGTATCAAACGGTCATCTTTTACGATCATA
TTGTCCATTCGAAATAATCATCGTATCCGATCATTGCTTCTCGAATACGGTTGAAAACAT
GCCTAGTCATATAAAAACGCCGTCGAAATTTGTTATGTTTGAACAGTGGGTTAGCGGCGT
CGAAGTAGTCCTTTCAAAAAAGAAATAGTCGCTCTTTCGGTTGCGATTCAACGTAGGAAT
GTGTCTCGGGATGAAGCCACGGAACAACGAGCGTTGGCTATTGAGGTGATGATGGACCAA
CACGGCAGCCAAGATGACAAGGAATCGTCGGAGTCGCAAAGGATATTATGAAAAAAGAAC
TCCTCGACGGAGTTCATTTTGTATCTTGGCAAACTGTCGAACAGCTTGCGGGCGTCGACG
AAGGAGTCGGCCAGGTGAAGGGAGGCGCACCTCCCTTGGACCAGGTGGCTGGCCTGGAGG
CGTCCGACGAGCTTGCCGTCGTCAGGGCGAAGGAGCTGGCGGGTGCGGCGAGGTGACTCC
TTGCTCGCGGCGACGTGGGGGAGGTGAAGCTGGGAAGCTTCAGATCTGCGTCGGTGAGAC
ATTGATGGTGGCGACGTGGGAGGTGGTGACGTCGGGGGACATGTGTCGGCACCAGTTGCT
GGAAGAGGCACCCAAAAAGTGGGCGGCGACAGCGATCGGCGTCGGCGACGAGGGTTTGTT
GCCGATCTTGGGTGGGAGAGGATAACGAAAGTGCCACCGACTAACGGGCCATGGGGAAGA
GTAGGCGGGCGCACGTTCGTTTTGTATCCATACCGACGCAAAAATGGTCAAAATTGGAAC
GGGAATGGACCGGCCAACGGACGAAAAGCGGACGCTCGTTCATTCGGATCGGCACGTTGG
ACCGATTCTTTTATCCGCATCGATCAAAACTGACACGTACATTTGGAGTTGCTCTAAGTT
TACTTGTTTGCTTTCTGCAACTTGTTTCGTTTTATTCACATTTCTTTATTTAAGTTCATT
TATATGTTTGCGTCGATCTCTTTCATGTCTATCTTGCATGTGCCGCAAATGGCAAAATTG
GCATATGCATACAGTTTTCGTTTGCATATTCATGTCTATCTCCTTGGCTCCTTAATCGAG
CAGCTCTCTTAGGATTCAGGCGGCGAAACTTGTCTCTCTGGCCTCTTATACCGAACAGCA
GCATATAGTTCTCGTTTTGCTATCGTAACACGTACGACTAACTAGGGATAATCATCACGT
GCTGGATCGACAATTGTAAGACGATATTTGGATTCGCAAAACAGACGTACCTGCTGTACT
ATCCTTTTTCTTGGAGGGGCGTAAGCCTGGATGCCGTGCACAACTAGCACGCGCGTGTGA
AGCGTGCAAATCCGGCAATATCAACAAATTTGATTCCTGTGTTTAAAAAATTCATAAACT
GAATTGTTTTTTAAAATTTCGTTCGGCTGACTCTTTTGTGAGGCGCCCGACGCTTAGACG
TCACACTATACTGTGTGACGTCTTAGCCATAGGCGTCGCATCGCGGTCACGCTAGCGTCC
GATCCCATCCACCCTTAATAGTGTGACGCCTAAGACTCAGGCATTGCACTTACGACAGTG
TGACGCCGAACGCTTAGGTGCCACACCCCCACTTACCAATCGCCGCCCGCCCCCTCTCCC
ACCCTTCTGGCATGGCAATTGGGGTGGTGCCCTTCTCATAGGCGTCACACATGCCAAATT
TCATAAGAAGTTAACAACTTGTGATTGACAACTTGACATTAACATATTGCATTTTGATCA
ATATTTTCATTTGAACTAGAGAGTAACAACAAATAATAAGCTTAATGTAAGTTTCAATAG
AACCAAAAGTTTGATTTCATAGTAATACAAGTTCATCAACTAGTAATACAAGTTCATCAA
CGAGTTAAACCAAAGACAAACATTGCTACTAGTTCAACAACTTAAAACAACGACAACACT
ACTACTCTGTTCATCGCGTCTTGTGGCCTCGTCCCCTCCTAGAAGGTAGCTTTCTTCTCA
CAACAGGTTGCGGTTCCTCCAACTCATCGTTATCGTCATCGTCCATACCTCTCATCCTTG
TCACGTCTTCTATCATACGCGAGCCCTCGGAGACCGGGTTCTTTCCTTTGTTCGCATAGT
CCGTCGGTGAGTACCGCTTAAATCCCCTCCTAGGCTTCAACATGTAAGCGGAGCGTTGGA
AAGCCCCCAACGTCATCTCGTCATGAACCTTTAATATAAAAACAGTATCGTCATCATTTA
GCGTGGTAGGAAGAGTTGAAAGTGCAGAACCTATGATGGTATGGCATACCTTTGAAGAGA
ACACATCATCCTCTAAATGAGCTACTGAGGTAATGTTACCATCGTCCATACGAGCTCCCG
ATGTATTTGAATCGTCTGGAGTATTCCTATGGGATGAACAGGATCTCGATGGTTCAGAAT
ATTTGGGGTCACGGCAACCTAAAATGTTGGACAAGCGACGCAACTTCTTGCCCTGTTTCT
GTAAGATGTCATTTGAAAGATGAATGAGATATAGAATGTACCAAATGTTGCATTGCTCGG
CAATTTGTGAATTATGACACAACACCTTGATGAAAAGTTGAAGTGCAGATTCTCCCTTTT
TTTCCTCTATGTGTTGTGTCTAGAATAGCCTCGGTTTCATGAGCTTGTTTCTTGATCTCT
TTGCGCTATGATCACACGAAAATGACATGTAAGGCAAGCAAAGATGTGTAGTAATGTTCA
TAGATAACACAGGGAAGCACACTTACCACAAAGTTGAGCACTGGAGCAAAAGGCGTTTGG
TACCCTTCGCGAATTAGCTTGTTGTATTCGCCATGGGCAAGTTCATCAATGCAGTGGGAT
CTTCCAATATGTACTCGTGAAAAGTCAGCGGACAAATCTCCACTCGAGTATTCTCCTGAA
ACCATCTGACGTAGTTGTTGAGCGCAAGTGGACAATGCTCGCGGACTTGGGTTCCTGGGG
TACTCCTATCTTCCTCCACACTTTGCTCGAACATGGTGACATACTTTTTATGATGCTTAC
TCCAATCATTGATCTTTCGCTGCCTCCTCCTATCCAACCTACTTTTTACATACCTCATTA
TTAGCTCGCTCACAATTAGCTCGAACATAGTTCTTTATCATGCATGCTTTGTTACATGTG
AAGTTGTGCGTCCGTGTCCACCCACTCCGGCGGGTAACCCTGAAACAACCCAAATTGATG
AAACACACGATGCGGGAGATGAAACTCAACCGCCCAATTGCATATAATTGGGCAACACAA
TAGCCAAAGATGTTTTTCCTGCAAGCATATTGGATTCAGTTGGAACGTGTGTGCATCACC
AAAAGCTTGCCCCAACACCATATGGTTGCCATTCCACCTATAACACAACACAAAAAGGCA
TCATTCATTTTTTCTTTCATTTAGGGAGTCAGCTCATTGAAGTTTACCCGCTCGGCGGTC
AGCGAATCCATCTCGTTGGTGTATTGCTTGTACAAGATAATCACATCACTCATCACCTCC
GATACCACGTCCCATTAGTAAGCCCACGTGGGAAGCCATACATGGTTGCCATGGTCATCC
TAGTACTTGAATGCTACCTCTCTAGGGCGTCCAACAGGAAGGCGTTCCCAGCTCCATACA
GAATGTAGGAGCATACAACCACCAATTCCGTCGTCTCTTGTGGACCTACGACAAGCTTCG
TCCAACTACAAGTAAAGACAAACACGAATCAGTTAAGGGCCAAACAAAAACTTATTATGA
ACAATTTATTACCTGGCGGTACAAGTAGGCCAATGCGTCTGACCCCCAGCTGAACTTGTT
GTCAAAAACTGTCAACGCCTTCAACCATATCCATTGAGCATTCTTTCCACTGCCTTCAGT
GAAGATAGTCCTAGAGATAACATACCACATGTACACGCCAGCATAAGTCTGGATCACATC
CTCATTGGCGTCCTCAGGACAATGAGCAAAGTTGGATGCAATCCAAGTGAAAGGAGCGCT
AGCCGGGACTCTATCTTTCTTGCCTCCGGCTCTGGAGGTGGCATACCGATAAGGGCCTCC
ATTTGTTGTTGCCATCCCTCAGAATTAGTGCTCATACAAAGAGGCTTCCCCTCGATTGGA
AGGGCGGTGATCATGGAAACATCTTGAAGAGTCACGGTCATCTCTCCGGTCCAGAGGTGA
AAACTATGGGTCTCCGGCCTCAACTGTTGGTGCACCAGAGACTAGGGTTTCCTGTGGCCC
AGACTTGTGCACGGGCACCGGCAACACCCCTCGCGACAGTACGCTAAGAGGACCGACGAG
AAGATACCCCAGGCTCGCCAAGACCAC