Map Locations of contig_68052 (10538 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_68052

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_75498 8 3351 bp MLOC_75498.4 Available Available LOC_Os03g40260.1, FRAME:-3, EVALUE:0.0, 13103.m04359 protein Regulator of chromosome condensation domain containing protein, expressed
MLOC_75499 2 250 bp MLOC_75499.2 Available Available None





CDS Structure of MLOC_75498






CDS Structure of MLOC_75499






Contig Sequence (10538 bp)

>contig_68052 10538 assembly3_WGSMorex_rbca.fasta
GCCCCGCCCCAGGGCCGGCACTGGATGATCGTGAACTTGCGGTGGTATGATTACGTCCTC
TTTTGGATGTGATGATAGGATGACACCCGAGTAGTGCTAGGTTTGAAATTTTATGCCATA
TGATCATGCATGCTTACTCCTTCTGCTACATTGTTTGCTTCTTGATTGTTCTTTTGCTTG
GTGCTTCAACTGTTGCTCTTGTGCACTGCTAGGACAATGGTATGTGGTATTCGTCGGGAA
GGTACCCGAAGTTTATAGTTCGTGGGAAGCTTGCAGTGAACAAGTTGCCTCTTAGAGCAA
CAACAACCATAGAGGGTTTAAGACTAGGTAGCAAGCAGAAGAAGCTTACACCAACTATGT
GCGAAAGCACAAAGTTGGCGTGGTTGAAGTTGGCAACATTACAGTTGACAAGGCGGCGCC
ACGCCTTGCGGTGAAGAACTTCATCACCATTGTGCAGTTCGTCGCTATTGCTCTACTGTG
ACGTTGTTGTGCTAGGTATGATCATGTGTAAGGTAACCTGATCACATAGGGTTCAAGGTT
AGCACACCTCGCACCGTGTATGCAACCAAACAACATGCTTATGTGTGAGGTCGGACAATG
TGGGTAACCAAACACCGTGCGCTACGCTATCCCCTAATTCGTAAGAACTAAATGCGGACA
ACCAAACAAGTTGCAAATGTTGGTTTAGATGTTGTATTTGCTCAACCAACCTAATGTGAG
CCAGTCTTGAGTTAGCCAGGCCGGACTGCCAAATGCGTCCCAAATGTGCACTGATAACCT
GGTCATCTATGTACATGTGCACACAATCACCCACCAAGCAGACGGCTTGGAGAGGATCGC
ACAGCAAACAAGATGATCATGTAAGCAAAGCTCAACTAGAAGAGGCCCTTACTAGACACT
TGCTCTTGTATTGTGTGCTTGTAAGGCAGACGTAGTCAATCAGTCCATCTTCATCATCAT
CGACCCCCGCCATTTTTTAGGGCGCTCGCCGCCAACTTGGGTCCGGTAAAACTCGACCTC
AAATGTTGCAGGTGGGGCCACACTCTCCACCTCACAAAAGCGTCCAAGCACCAAGTGAAT
AGTGCATCCTATAGGCGAAGGTGCCTTGGGGTTGATAACTGGGGACTTCATCTTCTCTTG
AACCACAACTTGGTGACCAGGGACTTCCTTTTTAGAGCCACCTTGACCTCTTCAGCAACA
AGTTTTAACAAGCTTTGAGGGCTTCGCGTTGTCAAAACGCAAGCCTCCGCCCCAAACCAT
TTCGGTGTCGAGACCTCACTGCAAGCATGAAATGAGTCGCTAGACGTGCAAAGCGCCCCA
TGGGGAGGGCACCCAATGGTCCGAGTCCTGGATCATGGCGAGGAGGGAGCTACCAGAGAC
ATTTCGCTCGCCCGCAGATTGTGGTACAGAGTCCTCTCCACCATCTTGACCCATGTACTC
CCTCCGTTCCTNNNNNNNNNTCTTTTTAGAGATTTCACTAGTAGATCACATACGGATGTA
TATAGACATATTTTAGAATATATATTTACTTATTTTGCTCCGTATGTAGACCACTAGTGA
AATATCTTAAAAGACCTATATTTAGAAACGGAGGCAGTACTTAGCATGTGTGAAAGGTCC
AATCATCTAGGTCGCCCACTCAGCTGCCATCTCACGCGGAAATATCAGCTCAAGAAGGCT
AAGGAATCAAATCGGGGACTCTGCTGCCGGCAACACCATCTCCGGCAAATGAAGGCTCAG
TCCATGACACTTACTTGTGTACCACCAATGCATCATTCCAAGCAGGTGACATGGTAAACT
GAAGACAGGATCAACGGCAAGAGAGGTAGAACCACTCCGCCTCCCACTTACCCCATTCGG
CTTGTCGATCTTGGAGGGCATGAATGGGCGTTCATCAACAAACTTAAAACAATGCTTTGA
GTACACCGTCCCAAAGATACACTCGATCGAGCTATCAGAGACTGTACCACAGTTATATCA
CCACTTGAAAACGAACGAACACCGTCTCCTAACGTTTGATGATTTGAATAATAAATCACG
AAGTTGTGCAGCTTATCGAATATACCGGCCTTGTAAGTTGCAGGTATAATTTCATGCAGT
TCCCAACGTATACATGTTTCATGATTACAGAGCCTCCACTCCGTGGTTACACACTTGGGA
GACCACAAATGAGGTTTCAGTCAAGTAGAAAACAATTGCTACTTCCCGTGAAATACAACA
CGGCCAATGCTTGAATTAATGTGTATGGCGAAATGGAACCAAGACCGCATCCTAACCGGC
TTTGGCCTCGATCTCCTCAACCATGTGCATTTCCACGAGCTCAGAGTCTCCTTGCTCAAC
CAAATGTTCCCTGTAAAATGCCAATAATAAGCAACACCGGTGCACAAAAATAACTAAATC
AGGAGTCTGCAAAAGAAAGGCCAGTCTGTCTCATTTTCAGTTTGTTCCAAAAAATTATCA
TTGGAAGACTACGCACTTTAGTAGACATATGCCTGTTTCAGTTCTTGTAAATTGGCTCAC
ACAAACAGAATGTACTTAAAGCCCATTTTGTACTGGATCACAGAACAGATTGCATGAGAA
TTCAGCCACACAAAACACTAATATGAGCCAATTTTTTTGGCCATACCTTAATTTCTCACA
CAGGCGTGCCAATGCATCAGCCCCGGTTCGTGATGCGACGTCTTCTATTAGCCGAGCGTT
CGACCTATTTACTGTCTCTGCTAGCTTAAACTCACATAGTTCTTTCAAGGACGACGCATC
AGTTAACACGGCTGAATGGCCACCACCTGCAGCAAGTCTTCTCACCTCTCCAACACACCT
ACACCATAGAAAAAGATTTCAGACATTGCATGATGTGCTAATCAACTACTAAGAATAGTT
ACACATTTCACACTCATAAAGGAGAGATAGAAGTAGGCGACGTACCAATCAACCGGAGAA
GGGTACCAAGCATAAGTGGATTTCTCATTAGCTGCCTGGCCATAACTGTTATAGCCCCAT
CCATATATGCGGCCATCTTTCATCGATACAAGTGTGTGCGAGTGACCACAAGTAACAAGC
CGGACACCTGATGGTATGACCAGGACTGGAATGTTACGAAGTAGCATGTCGGATCCATTA
AGAGCGCATGAAAAGAAACCGTTCTGAGGTCCAAGCCCCAGCTGGCCCACATGTCCTCCC
CCCCAACCGTAGAGGGCTCCACCTTCCGTTACAGCACAAGAGTGAACCCCACCACAAGAC
ACATCCCTAATTACTATTCCTTCAAGGGCAACAACTCGCCTTGGGATTAGCTCCTTATCT
CCAGACTGAAGCGAGCGATGCCCAAGCTGCCCCAGGCTTCCAAGTCCCCATGTATACCTG
CAAAATCCAAAGGTATTTACAAATAGAAATAAATGGGCCTACATGATGAAAGGCTGAAGA
TCAGAAGCTGTTACAACAGACTGACTTCACATGAAGGCTTTCAAAAGAACATGCTCCAAA
ACCTGTACTGCAATGTCTCCAAATGATGCCGCTTATAATTAAAACATACTCCAGCACGCA
CTTTTACCATTACTTTTTTCCTATATACTTATGCCAGTAGAAGTTATAGAAATTATATTT
GAGTATTTTTTATGACAAGCACTGTTGCCTTGTGACCATGAGGTCACGGGTTCAAGTCCT
GGAAACAGCCTCTTACAGAAACGTAGTGAAAGGCTGCGTACAATAGACCCAAAGTGGTCG
GACCCTTCCTTGGACCCTGCACAAGCAGGAACTACATGCACCGGGCTGCCCTTTTTTTAC
TGTTGCCTTTTTCATATGAAATATCTAAAGCATTCCAAGCATGGTTTATTAAACTATATC
TATTTGGAAACGGGGGGAGTACATGATAAAATCCAAGATAGTTCACACAGAACTCAGTAA
ACCAATAGACAAGTCATGGTGTTATACTTTGCAGCTTCTAACCATAAAGTATATGACACA
TTTATTTTGCTTTAAGATGTGGAAAAATGCAGTGATTTAAGTAATAGCAAAACTGGTTTT
AGCCGTATCGACGCCACGTATTAGATCGCATGACACTAAGCTAAAAGATAACCATTCTGC
AATGTTTCCTTCACAGATGTTAGTCATGGTTAGCTCATCATAAATCAAGCTCTTCTATTT
TGCCAACTGAAGAAACCACACCACTTCCACTAACAGCAGAGAACAGCATCCTTTGAGATG
ACTTACACCTCCCCGTTTTCTGATATAGCTGCTGCATGGTACTCTCCACATGATACTCTA
ACAATCTTCACTAGCTCAGGTGTGTCATCAAGGAACCTTGCATAAGCATTTAATACACGA
GCTCCCTGCAATCCTTCAGAAGTACAACCTCTGCCAAGCTGACCATACTCATTGTAGCCT
GGTTAGTAAGAAAATAGTATATATCTTGTTAATAGTGAGAAATGAAATGATTGAAGAACT
GGGTCCTGTTTGGATGGAAGAACTGGCTCATGTTGCATGTTTCAATAAAAAAAAGTATCA
GTCATAATAAGCTATCTTGATAGATTAAACATCGAGTTACGGTCACTAATCAAGGTTGTG
AACAGCAATTTTGTTGTACGATTCTACGACTTCATGGTCTAAACTGATTGAACTGATTCT
ACTACAATTTTACGATTCTAAGAGTTATGATCCTACGGTTTGCGATCTTACCATACAGTT
CCGATCCGATTCTGAGAACCTTGGTCACTAGTGATTGACAAAGCTAGCACCAACGCCCAA
AGTTTCAGTCTAGTATGTAGACTAGTATGTCTTTCCTAAGAATTTACAAGTAAAACATGT
GGACAGAAGATGGACAAGACATTTAAAATGGAACATTACCCCATGCTTGCAGCAGGCCAT
CATCCGATAGGGCCACCACATGAACAGCTCCACAAGAAACCTGCCGAATTACCTGTGAAT
GTATGATTGATATGTTCAGTGTCACGATATCACCTCAAAACATACATTAAAAAAAAGAGT
CAGTAACATTTAAATCTGCCAACAGTTACTATTATTCATTTGGGGTGCTATTAGAGCATC
TACAGCAGGGACCCTTAACACGGCCCATCTTGGTTTTGGCTTATCCCCCAAGTTGATGCC
CCCCTCGTAGGCAAGTAACACATCCATATAATACATTTGCACCCCCAGCCAAAAAGCAAG
CAATAGTTATTCCCTTACACCCTCTCTTTACTTTCCTAACAGTATATTAATTTTAGGGTT
TACCATCATCTGGTTTTCCATAACTATCAGGTTTATTAAGAAAGAAAGAAAAAGCACTTT
CAGGGGCACGTGAAAATAGCATACAAGCATATAACCTGCTAGGTGGGGAGAAGAAGTTCT
ACTAGAGATCTAATTTGGCAAACTAGGTGAAATTTCCCAGTCCACCATGATACTTGTCGC
TGGGGGCACAAATAGCTCATGGACAACAGGAAAAAACATATCAGCACATGACTATTGTAT
TCAGTGTTCAGCTTCATATAGGAAATTAAGGATCAAGACCACGAGGGATTTTAATAAATA
CTTTCCTATATGGTGAATGTACCTATGCATATAGTTGGCATACCTTATCATGTTTACTTT
CCGGACAGATGAAACAGGGTAAAGTAAGAGGAAACATCAAATAAACAGGACAAAAGAAGA
AGGCTGCAATGTTTGAGTACACAAACATTCAGTCTCATGAATCTACTTGAACCGTGCTAT
ATAATTGATTGAGTGTAATTGAACTTACCGTGTTTGGTGCAAAAGCACCCCAGTATAGGC
GAGGGTAATCTGAGCCCTGCAAGGAGCATGCAAACACAAATGCTAACTAATTTTATGTTG
CAAGTTGGTTCTCAATCTACAAGGGACAGATTCAGCGGTACAATTAATTTAGGCAAACCT
GATTTTGTCCCCAAACCCATAACCTGCTTCTCGATATTATGCCATCATTTTCTCGAGGTT
CAGCAATAGCAGCTGTACAGTGTGCACCACAGGACACCGACTTCACAAACTCAGTCGCCA
GTGCATTGACCTTTTTAGGTTCCTTTGCACTCTCCTCTGTCCCATCTCCCAACTGACCAA
AGTCATTTGCACCTGTACATTTGAAGTTGAATGTAATCTGCTTTTGGAAGAATTCTAATC
ATGTTCACATATGCTTGTTATTTCTACCAAACTATAGACACAAAAAGGTTGCACAGTAGG
GCAGAATCAGAAAAATATTACATAATAACTATCAGAATGTCATGTTATCAGAGGAGGCAC
CATGCTTCCAGACCTCCAGCTGAGGGGCCAAGGAATCCTAGTACTACTCGGTTGCAGCAT
GACCTAGATGCCTTCAGCTCGAGTCCTTGTCCTATATGGTGTCTTAGTAGCTGCACGTTT
AGCTTTAGGGAAGAGTCCTAAGTCCAACTTTGTTTCTGAGTCATATGAGTACGGCCAACC
TCTATATAACGAGGCAGCTACCATTGTTATGAATCAAGCTACATAGTCTAATCACCAATC
TCTATTTCTCTGCTTCCGCCTTCCATAATTTGGGTGCCCTGTCGCTTGTGCCACTTCTGC
TATCACAGCTCCGCCAACAGGGCACCGCAAGGGTAGTGGTTCATGGTCTCCTGCCTATCG
TGATTATCAGTTACACACAATCCATATTGTGACACAGAAGAACAAGCAATAAGCCAGTTA
AATTAAGGGGATAAATACAATTGGTAAGACTTGTCTGGAAATGCCTAGCGAGTATGATGT
GCCAAGTATCCATGAATAGTACAGAATAGTCCATTCACTACTAGGCAGAAGCTTTTACAA
GCATGTAGCACCGACCAGTGGCAGAGCTTGGACCAAAGAACTGGATGGGCCAGGCTGCAA
GAGATTGCTCATGGATGGCGTTCTACGGCCCATGGTCTGGCTGTAATGTGTGATGAAATG
CTCCAGAGCTGGGTGGGCCATGGCACGTGTTGGCCCGCATGTAGCACCGTCACTGGCCCC
GACGGTAAAAATCATCAGAGATAATAACTCGACTACAATATTTCAGATCCAAATATAACA
GCGATGGCACGGCATGAATGGCAACACTCCTGCTTGATGGTTATCTAACACTCCATAATA
TACAAGATTTAGTAAAAATGGACCTACCCCAGGTGAAGAGTGACCCGTCAGAAACGACTG
CAGCAGTGTGTGCACGGCCACATGCAATATCAGTCCATCTGAGGTTCTCGCCATCCCTAC
AGGTGAATAGTTTGGGAGGTAGGCTCTTGGGGATCCTCAAGTGACGCTCCTTGCCCTTGC
GTGCAGTCTGCCCACTCTGGTTATATCCCCATGTGTATATGGCACTCTTGGTTGGCACGC
CAACAACACGCAAGTTGCAAATCACATCATCTATATCCATTGCTGTCTGTCTGTTCATCA
AATGCAAAACAGCAAACAAAGTGACAAAGCGACGAGGACGAATCTACACAGGTTGCTGAT
GAAGCAGTTCAGCTACAAGCCTACAAGTGTCCAACTTTGAACAACACTTCAGTTACCCGG
CACAGGAAGCATCTAAATTCACATCCCCATTCAGGTGTTCACTCACGAAACAATTCAACT
GGATAATTTGCAATCAATAATCATGAAGGCGTTAATTAGAGCTACACTATCAAGTAGGAG
GCTTTTTACAGAAATTTCATAGTCGCACCCATCAAATCAGCAATTTAATGCAATGGCATT
GGTTAGGATGTGTAACCTAACCTCTGGTCTAGTTGCCCCCCAAAATAATAAGTACAATCT
TTCGAAGTATTTCGAACAGCAGTACCAACTTTAGCTAAAAGGGCAATTCGAGTTGCAAAT
TCAGCCAGCAAGATTTGCATTCTATTTCTAACTGAAAATCGATCCAAAGTTAAAATGCTC
CCAACTTGCATAAAACTTTGACCCCGTTGACGGCACTAGCCCCGCAGTCTGCCCAACATT
AGGACTTTGCTGAGGGGGGTGCACAAGAATCAGATAGATAACCGGAGGCGCGGCGGGGGG
CATGTGGATTGTTTTAATCAATTGAAGCCCCATATTTTTCATGATAGTATGATCAGCTCG
TCATGGTAAATAGACATTGGCGGCCGCTAAAATGAGAGCGAAAAGAAGATGAATCCAAGC
AAGCTAGGGCTTTCTTACCAACAACAGAGGAAGGAACTACGCCCGGATGGATCTTCACTT
CAGGGAACCAATCTTGCTTCCTTGGGTGGATGGGGGTAGGAGGTCGCGGGGGGGCGGAGC
GAAACCGCGGGGCCGACGAGCAGGGGATTCCCGATTTCTCTAGAATAGCTTCCGGATTCC
CAAGTTCCAAGCGACAAGGAAGAAAGCGAACGGTTCACACAATAAGTCACGTGCCGAACC
CCAAGGAAGACGGCCGCAGCAAATGGTGTGATTTTTTTTTCTTTTCTGCACAACAAAAAT
CATCCTCCTTACATATTCGGTCCCTCAAATATATGCGGACAAGCTAATCCGCAGACGCTG
ATCAGACACGTCTTAAACTATGTTTTTTACATTTATACGCTTCATATTGGACATCATATA
TCCACTGGCGGATTTAGGCCCAGTCAGCCTGGGCGACGGCCTCGAGCGTGAGGCTCATCT
GCTTTGTTGAGTGTAGCAAATATTGTAGCTATAGTGCTACAGTCAAGGAAGGTTGCATGG
GGTCTAGCCCAGTTTGTGTGGGGCCTGGCCCAACTCGCCTGGGCCTGGCCCATTCCTGGG
ACCGCCACTGCATATATCCATATTATTCGTGCAACATGAAGATAAACTATGTATATCATC
GTATGGACGGATCTACATAGGTAAACGTGAAGATAAACGCAGCTAGATATATACATTCCA
ATCATCAAAAGATCACATACGAATCTTCAAAAGGCACTCAAGATTCACATAATCCACACA
CTACATACATAATCTAACTAGAGACATAAAAGAGTAGAAATTAACTACAAAGACCATGGA
GATTCACCACTTCCTCGTCGGCCATTTCCCCTTTCGATCACCGGTGCACCTGTAGGTGTC
GGCGGCCGGTGGAGGATTGTGTGAATCATTGGATGACATGTCATCCTCGTCATCATCGGA
GGAGGAACAGGAGAGGATGACGAGCCCTTTGAGCCACTAGACGGCCCGGTCCTGCTGCCG
CTTGAGCTTCGCTAGCCGAGCTGCTTCCGTCGCTTTCTCCTTGGCCTCGTGTTCGGACTT
CTCGATGGCAAGCCAGAGCGCCTTGGCGTTCTGCCGGCGGAGCCGTCGAGCGTCCAGCTT
TGTCATCGTAAGCGACCAGTGATACACCCAAGCGATGAGCCGTTCGTCCTCGTCAGGCTC
CGCTGGAAACCCGCAACGGCGACAAACATATTTCTGTGTTGCCTCCCCGTCCCTTCCCCC
AATGCCTCTCATGGTGAGCGGCGCCTCCGATTCCAACATGCGTGTTCGGGTCGGCTGGAC
GGGCACAAGCATCCACCACTGCCCACATGGGTGAGAAACGGCCAGCGAGGGCAGGGGGCG
TTGAGGAGGAGGTGTAGATTGCACAACCCTCATGAAACTACGCACGGGCCGGGAGGGGCC
AACACTAGCATCCTTGCTTCGTCGTCATCGGGGGGGGGGAAGACGAGATGGCAGATCCAA
AACTGGCCCCAGTATCCACCTTGGACCTCTCCGGGGTAATGTAGAGAGTCAGCTCCTCCT
GGGCATAGAGGTCGGAATCGAAGTGTCTGTCGGCTCTCGACATGGTCGCCGGAGTCCTCG
GCCTGGATCGAATCAAAGAAATCGGAGGAGGAGAAGAAGAGACAAGACAAGAGCAGAGTG
AAGTAGAGTTTTTGGATTGGAGATATTTGTGGGGACTAGTAACCCACAAGTATAGGAGAT
TGCAACAATCTTCACGGGTAGTATTACACCCAAATTTATTGATTTGACAGAAGGAGAGCC
AAAGAATATTTTTTGGTCTCAGCAATTGAGTTGTTAATTCAACCACACCTGGGATTTCTT
CTAACAATATAGTTTTTGTAGCACAGAAAATAGTTGTAGAAATAGTAACAGTAGCAACTT
GTAGTGATTGTAAGAGCATCAACAACAATAGTAACTTAGCAAAGATCAATATGTAAACAA
CGTAGGCATTGGATCGGCGATGGATAAGTATATTGGATGACATTCATCATGTAACAGTTA
CACACTAGAGCAACACGGAACTAGCTCCAATTCATCAATGTATTGTAGGCATGTATTTCG
TACATAGTCATACGTGCTTATAGTAGGAATTTAAACGACATCTTTTGTCCTATCCTCCTG
TGGCAACATGGTCCATAAGTAAATCTAAGGGATATTAAGGCCTCCTTTTAATAGAGAACT
AGCACAAAAAATTAACACATAGTGAATTCATGAACTCCTCAAACTACAGTAATCATTGGA
AAGAATTCAATTATTGTCACCTTGGGGTATGTGGATTATGACACGTAATAGGTGCGTACA
ACTTGCAAGATAGGATCCAAAACACTCTCATATTTATGAAAATATAATAGGTTCAGATCT
GAAATTATGGCACTTAGGACCTAGTGACAATCATTAAG