Contig Data
morexGenes
Links



Map Locations of contig_6802 (5261 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_6802

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_75488 1 539 bp AK371500 Not available Available None
MLOC_75487 12 2224 bp MLOC_75487.1 Available Available LOC_Os11g37520.1, FRAME:+1, EVALUE:4e-97, 13111.m03672 protein BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed





CDS Structure of MLOC_75488






CDS Structure of MLOC_75487






Contig Sequence (5261 bp)

>contig_6802 5261 assembly3_WGSMorex_rbca.fasta
TTGGCAGCTGAATGCTACATTAATGCTCTAAAGATTGGCCACACGAGAGCTCATCAAGGC
CTCGCCAGGGTTCATTTCCTTAGGAATAACAGGACCGGTGCATTCGAGGAAATGACAAAG
CTGATAGAGAAGGCCAGGAGTAATGCATCAGCATACGAGAAGAGGTCTGAGTATTGCGAC
CGCGATCTAACTAAAGCTGATCTGCAGATGGTCACCAAACTTGACCCCCTGCGTGTTTAC
CCCTACAGATACCGTGCTGCTGGTAAGCGCTTGTACCTGCCTAGCATATCTAGTTTTAGA
TCACCAGTTTCAAAGAAGGTTGAAACTTTGAATACAAAATTCTGGTCAAAGTAGTTCAAT
TTATTATTGGTTGTAGCTCATCTGCACCCAACTCCCAGAGAGGGTTTGTTGGTACTTTAA
CAAACCAACTATCCAGTTCCTAACATGGGCTAGTAATAAGTCAATGTTGTTTGCCATATT
CTATGCTAGTTGGTGTAACAACCACACATTTCATTTAGTTCCTGAAGTAGCTCATCTGTT
TAAAGTTTTCATGCCTCCTTTATGCTGATGTGGTCTTCTGTATGACCTGGTCCTCAGTTC
TGATGGACAACCACAAGGAGAAAGATGCGATCTCAGAGCTGACCAAGGCAATCGCCTTCA
AGGCGGACCTGAACCTGCTCCACCTGCGTGCGGCCTTCCATGAGCACGTGGGCGACATCT
CAGGCGCCCTCCGGGACTGCCGTGCAGCACTTTCCGTGGACCCCAACCACCAGGAGATGC
TCGAGCTTCATCACCGGGTGAACAGCCAAGAACCCTGAGCCCGTTGTTGTACATACAGGA
GGGGCTGCCATAGCGAAAACCCATACCAGTGTATGTTCTGTACCATACACAGCAAGCAGT
AATTTTTAGTTTTGATGGTGTCTAGTGCGGCTGTAAGGATTGTGATCATCAAAACGTCTA
AAATTAAGCCACGTGCTATATGGAAAATATTACAATTTCCACTTTTGTCACTTGGCTACA
CTAACTGGGCAATAGGCTTCAGCATGCAACAATACACTACATCCTGCAGATTGAACTGAA
GGCCTGGCTATTGTGTTCTTCAGTTTTTGCACTGCTGTAAAGCTCCACTTCTTTTGTGTT
AGTAGTGGATCTGTTATGACATGCAATTTGATTTGTCCATTGTGTTACCATTTGCATGTT
CTGTAAACTGGTAAATATTAGTATTAATTAATCCTCAGACTGGAGATGTAAAGATAGTTC
AAGTAGTTGTTTTTGCGTGATTAACTATGGTCAGGGTCTGAAAATTAGATATCGTTTCTG
ATTTTCATGGTCGGTAAACTGGTAAACGACACTACCAATTGTTGCATATGATTGAAGACT
GGAATGATCTGCATGAGATGGTTACCGCTGCATGTTATTCCCCTGATGGACAGGTATAGT
TATTTTCCTTGTTAGTGAACATGTGTACTGATCATGAAGCTAGATGAGCTTATGCTATAT
TTCTCTGTTACTTTTGAAGGTTGCAATGGCGGGATCTCACAAGGGAAGTTGCCATTTATT
TGATACAACTGGTATGCCACTCTAATCATAGTTAAAAGCATCTGTCAATGTTATTTACAA
TTAAGTAATAGTAGGCTGATATAAAAAAGCATTAATATGTAGACACGTACTCACTTTCTG
TAGTGTTTGATTATGCTGATGACTGCAGAAAAGAAGCTTCAGTACAAAAGTCAAATAAAT
CTAAGAATGGGAACAAGAAATCTGTCCAGAAGAAAATTACTGGCTTCCATGTACTCCCTC
CGTTCCTAAANNNNNNNNNTTTTAGAGATTCCACTACGGACTATATACGGAGCAGAATGA
ATGAATCTACCCTGTAAAGTATGTCTATATACATCCGTATATAGTCCGTAATAAAATCTA
TAAAAAGACTTATCTTTAGGAACGGAGGGAACTTATTTGTGCAGTGGATGCATTAGGAAC
TTAATACTCCCTCCGATCCATATTAATTGTCGCTGACTTAGTGCGAAGTTGTACTAAAAT
CAGCGACCATTAATATGGATCGAAGGGAGTAGTTAATACTCGGTTAAGAAATACTCATGC
TTAGCCTTCTTGAGATTTGGACTCTAAAATTCATCTGTTAATGTGATGCCACCAATACCA
GCTAAAGCATCTGTATCTCACGCAGCAGTTTGCTCCAGGAAGCTCCTTCGAAGTCCTGAC
TACTTCTGCGGATTGAGGAATCCGTGTTGTTAATGACGATGAGTTTCTTCACAAATTTAA
AGGTAACATTTCGTTCTCCTCCCATTGTAAAATATCTAGGATATGTTTGCTGATCAAAAT
AAAGTTTTATTTTTCGCAAATCCAGAGCACATGAACAATGTTATTCTGTGTAATGCAATT
TGTGCTGACCTGTTTCCCTTGGAGGGAAACACACACACACACAGGGAGATTTGGTGCACT
GCACGACTTGTGTCTTTTTTCTGTTTCTTTCTTCTCACTAACAAATGAACCAGATACAAT
GGCTTAAATAGCGAAACGTGCAACGCACCAAGCCTCACTGGCCTGATCACCATGCTGTTT
CTTTCTTCTTATGGACCCACTCTCCACTAGCTAGCTACATGCACGCACACGTTCTCCACT
TGTGCAGCATCACCGCAACGGCTGTACAAGCCAGCCAAAACAGCATGCATTCACGTTCTC
CACTTGTGCAGCATCACCGCAATGGCTGTACAAGCCAGCCAAAACAGCATGCATTCAGCC
GGCTGACACTAACAACCTCCATGCAATCTACTCCCTCCGCCCCATAATATAAGGACGTTT
TTGACACCCTTATATTATGGGGCTGAGGGAGTAGCTAACTAACACAGGTATACACGGCAC
TTGCACGTCCAGGTTGCATCTCCACTGGGTGCACTGGGGCCGTTCCTTGTTCACTGAAAC
ACACGTGTACACAAAACGACTCCAAGAGCACCTGCATGGTTGCCCTTGGCTGCTAACTTG
CGGAGCATGGTTGCCCTTGGCTGCTAACTTGCGGATGTGCTCACGTCGCTGCCGCCACAC
ACGCTTCTATCTCTGTGCTTCTCCAGCTGCTGTTCCGCCCGTGTCATGAAGCAGCACATG
CAATTTTCCTTCAACCTATTAATGAGATCTGTGACAATGAACTATGCAATACAAATAAAA
ACATCAACTAGACCTATACAACAAGGCAAACTCTAACAGAGCAATGCCTTTGCATTCACT
TTATGTTTGATATTCTCAACAGGGGTTCAGCAATGCTAGAAGCCAAATCTCAGCTTCTGT
AGCTGCAGAGAGGAAATTTGTAGTCTGTGCCAGTGAGGACTCCCATGTGTTAATGTGTAT
GTCTGGAGACATGGCAGCAGTCCCCGTCCAAGCAGAAGCAGAAGCAAGAGTCCATGATGT
AGCTGTCCGACTCGGATGGCCTGGCATCGTCTGAGGGTCGTAGCAGCAGACAGCCAGACA
CAGCGATTCGGACGGTGCAGTGAACTCTGTCCCTGAAGCTCCTGTACAACAAAGACAATG
GGCATGAACCGAATGGGACTGCTCAGAGATACACCGAGAGCCCAGTTTGCCAAGCTGGTT
CAAAGCACAAACACTAGCAATCATCCAGTTGAAGCAGTGTCCCAATCCTTGCTCGACAAA
CAACCACCGTCTGCCAAGAGCAGTCGTTGTCATGGCTGCAGAGCGCCTGTCTGTGCGGGG
TTTGGTAATTGTCATGGCAGGACGAGGAGGAAAAACCAGTGTGTTCCAGAATTTTGGTTT
TCCCGTTCGAGTGTAAAGGTAGTGTAAGAGCGCGGAGCTGTTGGTTTCTACTGTATAGGT
ATATCTTTTATTTCTTCACCAGTTCACCTAGAATCTCAACTATTTGAAAGTTCTGGGGAC
TGGTTAGCATGCATGCGTCCACCATTCATCATCATTTGATGGTTCGTGTTACGTTTTTCT
AGTTCGGTCAAAATTTGTCGTGTTACATAGTATATTACGTAATACGTATTTCATTCAAGT
ATTTCTTGTGTGCTGCATGATGTTTCTTTTAGGACTTTGATAACTAGCGAACATCAGATT
TGTTTTAGAAGGGTATGGCAGTTTTTCAAGCATGACAAATGAACCTTTTGTTATGGCAAT
TTCCATGTTCAGTTTTTATTTTTTGCTAGAATTTGCCGTGATTGTTAAAAGAAATTGCAT
CCTTACGACAACATAAATTACCATAAAACAACGTCAGATTTTGTTCTACTTTTATTTATG
GGGTTTCTTCAAAAAATTTAGGTGTATCTTTCGTCGTGTATACTAGTAAAATAAGACTAA
TTGTCAGATTTTTTTAGCGAGTACAGTTTTCTGTCTGGTTTAATGTTTCGTCGTATATCA
GCAAAACTCGAAAGCATGAATCACTAAACACATTGAACCGTTAAAAGTTTCTCTGTTTTG
AGATCACTCTGTTGAAAGTTCTCTATGTTTTGATGCCTTGAGAGCTCACTTCCCAAACCA
CACCATTCTTTCTACTACTGCTGATACAAGTCTCTCTGTAATTGTATTGGTATTAGCATC
CAATACATTTATTTGTTCATGCCTTGGTTCTTTATTTGTACAGAATAGATAGCGTATTGC
AATTAAGTTCATGAACAAAATAACATTACGTGCTTCACTACTACTTCCTCAGTCCCAAAA
TAAGTGTACCTGATCAGTATAAAATTTGTATAATTTAATATTAAATCTGGGACACTTATT
TTGTATTTTTTTCTTGACAGTGATGATTGATGATTGAGCAACAACACCATATATAACCAT
TTATTGTAAATATGTAATATTGTATCACTGCACGGACCAAACTACATCGTCCTCCCTGCT
GATCATGGTCCATTGATTCAAACAACAATCGCCACATCATTTGTACCTAAGCATGAGAAG
AAACGCAGTGAAGTCGTGGGAGGATCCATGGAGCTACATGAGCATGAGCATGAGTACATT
CCTAGCTCAGGAGACACACTGGTAATAAGGTAAGCAACAACTAGCTGATCGATCGAGGCT
GCGATGATAAAACAGGAGCCTCGAACGCGCTGGCGGCACGCTGACTGACATGACGAAGCC
GATCATCAGTTGCCGGCCGCCGGGGGTGGCGGCGGTGGCCAGGTGAGCTCCAGGCCGCCC
AAGTCCTCCCACGCGCCGGTGGGGGCGAGCGCCCCGTCGCAGCCACCCCACGGCGCGAGC
CCGTCGTAGAGGTTGTCCGTGGCCGCCGGCGTCGTCCACGG