morexGenes - Barley RNA-seq Database

Contig contig_67697
Source Contig contig_67697
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_67697 (7158 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_67697

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75343	2	1939 bp	MLOC_75343.1	Available	Available	LOC_Os07g41260.1, FRAME:+2, EVALUE:0.0, 13107.m04291 protein PPR repeat domain containing protein, putative, expressed
CDS Structure of MLOC_75343

Contig Sequence (7158 bp)

>contig_67697 7158 assembly3_WGSMorex_rbca.fasta
TCGGAGAGCCACCGGGAGGGGAAGGGGCGGGGGGCTGCCACCACCAACGAACCCGGGGCC
AGGCCGGCCGCGGGTGCTAGCGACGACAATGGAGAAGGAAGGGAGAGAGCGAGGCTGGAG
GAAGGGGAGGTAGGTCGCGGCCGGTCTCATGCGGGGGCGACGCGGTCGCGGGAGCGGAGC
TCGTTCAGGTTTATTACCGAGGATAACATACGTTCACTTTATAAATGTTTATATGGCACA
TCTGGCTTAGTTATATAAGGCAATTTTTAACACGCTCACTCTTACCATCTCCTGGGTAAG
AAGATAGGAGTTTATCAAGCCACTGGTTAATGAGATCAACATGTATTCTAGAAAATATAA
TAATATCCCACTGGTTAATGAGGTCAACCTCTATTACAAAAAATATAATAATATCCTAGT
GATGTATCTCTACATAAAAGCGGGAAAATCATCGTAAAAAGGAGAGCATATACAAGCATC
TAGACCAGAAAAACAACTCGTAACATCAAACCTCAAAAATCACAATCCCTAGACAACAAT
ACCCAACCCAATATCGAATCACACGGGGACGATTAATGTAGAACTGACCATCATGTTGGT
ACAAATCTTTAGGGCAGCGCCAGGGCTTTGAAGGCTACGTTGGCCATGACGACCCTTCAC
ACCGCGCAGCAGGAGGCGGAGCGGCTCCTCCGCGAGCGGCAGCCAGCCACGGGACAAGGT
TCTTGCAGACCTCTGATGTCGTTCCACCGCTGGAGGGACTACGACTATGACGATGACGAT
GGCGATGGCACGGACGGCGACTGCGGTGCGGCGAACGGGGTAGGACAGACACACATCCGG
ACCCTGCAAAACCCACCACCTTAAACATCCGAGCGAACAATCGATCACCGCCCGGTTACG
AAATTGTCACCCAAGTGGACCCCTCAGCCCAAATTGTGTCTTTCAACCGCTTCATCGACA
AAGAAGACAAATGGGAAGAGAAATGGGAAGGGCAAGGGCGGTCATGGGTGAACTTCCTCC
ATAGATATAGATAGTAGAATGCACAAAATTTTAACAGTCCGATGACATGTATGATTCCCC
TATGCTATGTTATTTGATCTATGTGTGTTGACGATATGAACATTTTATGTTGGATGATGT
TGTATAAATTTTATGGTTTACATATAAAATGGACGGTTGTGGAGACGGACAAATGAGGAT
GACGGGCTAACGGACACACGGTTTATGATCAAATTAAACAATCCAGACCTACGTAACTTT
GATGTGTGTGGCAAAGCGGGACAAGGTTATGCCAATGAAACACTGCAATATGCTTTCGAA
ATAGTCTAGGATATACTTCACTCAAGTAGTTCCTCCGTTCAGAATTACTTGTCGCACAAA
TATATAAAAATAAATGTATCTATAACTAAAATACACATATATATACATCCATTTCCATGA
CAAGTATTTTCGGACGAAGGGAATATCTGATGTCGGTTACGAGCATATGTCAAATTGAAC
CATTTTTTATGATAATTTCAGTGGCACAAGGGTGATAAGTTAGTTGACACATTCGATAAA
TTTCTATCAAAAGATAAACTGAAGCACGAAATCGTCATGTTTACTGGAGTAATTAAAATT
GTAATTTTCCTGTCTTAAACTTGTCATCGACAATCTTCGATCAATCATGTATGTGCTCGT
AGCTGACACGTTTACACGATTTCCTTCTTTTTACATGTTTAGACGATTGAATGGAAGTCG
TTCTGCACTGCTCCCGTGCTCCGTCCTTGCCGGCCGATCTCAGATGAACGTTAGGGATTG
CATCTAGTAGCGCCTCTTAGAGCTGGCACCCAGTGGAAGTTGAAACCTCCCCTAACCCTC
GCTCCCTCGATCTCCCCCCTCCAAAAATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTAC
CATCGCCGGTCACCGCCGGCACCCCCTGCCCCTTGGTTCGTCACCTCTCCACGGCCCCCG
CTCCCTCCTCCACCACCGATACCACCTCCATCGCCTCCTCCCTCGCCGCGGCGGTCACCA
AGCTCTCATCCACCCTGGCCCCAGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCT
CCGACGTCCGCCCCACCAACGCGCTCCTCGCCGAGACGCTCTCCCTATCCCCTCCCGCCA
CCTCGCGCGCTGCCGCTGACCTCTTCCGCTTCCTCGTCCGCCGCTCGCTCCACCCCTCCG
ACGGTGCTCTCGCGCTCGTTGTCCGCCATCTCGCCCGCCGCCGCGACTTTCCAGCCGTCC
GCACCCTCCTTCAGGAGTTCCCCTCCGCGCTAGGGCCAGACACAGTAGACGCCTACCTCT
TCCATCTGGCGAGAGCTGGGCGCGCCACGGACGCGCTCAAGGTGTTCGACGAATTGCCTG
GGGAGCTTCGCACCCGTAGGGCGCTCACTTCGCTGGTCTCCTCCCTCTCGTCCGAGGGCT
TCCCACAGCTTGCAGAGCGTGCTGTCAAGAAGATCGCACATGAGATCTTCCCGGATGACA
ATATTTGCACTTTGCTGGTATCTGGTTATGCTGATGCTGGTAAGCTTGACCATGCGCTAA
GGTTGATCGGTGAGACACGCAATGGTGGGTTTCAGCCAGGTTTGGATGCCTACAACGCTG
TTCTTGACTGTGTCTGCCGTCTCTGTCGCAAGAAAGACCCGTTAAGGATGCCTGTAGAGG
CAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGGGACGCGGGAACGTTCC
GGGTGCTGATAAAAAATCTCTGTAAGATTCGCAGGACTGAGGATGCAATTAAACTGTTCG
GACAAATGGGCGAGTGGGGATGCTCGCCAGATGCTGACACATATCTTGTACTTATCAAGA
GCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGACGAGATGATGATTTGGATGCGATCCG
CAGGGTTTGGAGATAAACTTGATAGGAAGGCGTATTATGGGTTCATCAAGGTTTTATGTG
GGATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCCGTCTGATGAAAGGATATGGGCATG
CACCTGGAACGAAATCGTATAGCCTGCTGATCGAGAAGCTGGCTAGGCATAATTTAGGGG
ATCGTTCAAATGCGCTGTTCAGGGAGGCATTAGCGCGTGGAGTTACTGTGACACCAGGAG
TCTATAAGATTGACAAGAGGTATGTGAAAGAGAAGAAGGAGAAGAAGGTGAAGAAAAGGC
TGACTTTACCGGAGAAGAAGATACTAAAGAGCAAGCGGCTGTACAAGCTCAAAATGAGCT
TTGTCAAGAAGCCTAAGCGGCAAATGAAGTCTTGAGCATACTTGGGGGTAATTTTCGTAC
CCATGCTATTTTTTCACTCATAACATTTATGTTCTTTGCTTCAGACTTGAGCAGACCTGT
TTCGGATACGAGACCATCATTTTATGTTAGCTGTTTTAACCAGTGGTTTATATCCTACAT
CATTACATTTGATTGGTAGGAACACGCTGAAATCTGTTTTAATGGAGCTGATATGCTGAT
TTGGAACTTCATGGAATCTTATGCTTCATACCATTCCACTTAAAGATGGTCAAAACTCAA
GAAGTTAGTTTATACATAAAATGTTAGTGTAAGCATCCATAAGATGGAACATTGAGTGTC
GAATAGGCTGTTAAATCGAGAAATTTCACATTCATCTATGTGAGAAATGCGAAGTAAGTT
TGCGGAATGAGAAATTTTGGCTAGGGCGCTAGGACCAACTCAAAAGCAGATTAGCAGACA
CTTTTCTTTAGGCCTTGTTTGGTTCCTCCAAAATTGAAGGGGTTTGGAGGGGATTGGGAG
GGATTAAATCCCCTACAAGTCAAATTCCACCTCAATCCCCTCCAATCCTCTTCAATGCCC
TCCTCGATGGGATTAACCGAACAAGCCCTTAGTGGGATTGCTCAACTCGTTACAAAGTTA
TTAAGTCAGTCGATTAGGTATGGGTTCCCAATCGCTGATAGTTAAGCGAATTAGAGATGG
ACTGAGAAATTGAGGTATCTAAGTTGACTTCTCATTTCATTTTAATTTCATGCCAGCTAT
TTGTGGTCTAAGGTGCTTCATTGCTTCCTCTGAAAGTGGAAAGAACAACTCTTGAAGTAC
TTATATGGCCTGATTTTTGACAACCCACTACACTAATAACCATAGTGCATTAAGACTCGT
GGAATGTAGGCTTGGGGGGAAGCAGAGAGCACAAAGAGCAAATCATCTTTGTTTCTTTAG
TGCATCCAAACAGTTGCACTCAGGTGTAGTTACAGAGTTCAGATACTTTAATGGAAACAA
GTTGGGCTTGAAACCAAGAATCCTGGATGTAACTTTTGCTAGGAAAGGATAATGGTAGGT
ACAGCAAAGAATCCTGGCTTTATTTTCTGCAAGTTCACATGAAATGCAGATAGACTAGTA
ATTATTCTTTACCCAATGTTATGTTATCATGTCTCTTCCTTCCACAGGACTATACTGATG
ATTTGCTCTTTGCTAGACAATATTATCAAGTCAGTACTCCTTTTGTTTTGCCTTCAGTCC
AGTCTGTTTCAGAATAGCATAATGTCAACACACTGTCGACAGAGTTAAGTAGTGTGCTTA
GGATGTGTGTACTTTCCACTGAAAAATTGTACTAATAGTTGATGTGCTCCTCACTAGGCC
GCTTCATTAATATAATATCCTTGCTAGTGTGGTATCTCTTTCCTACAGGAATATCCAGAG
TGGGTTGTCCTTGGTGGAGACGATATTATCCAGTTCAACATAGAAAACACTCTTTTTAAT
ATGAAAAACAATGAATATTTGCACAGTGAAAATTAGAGTAGCAATTGGTGTTATTTTTTA
TTTCTGAAACTTGCAGCACATATTTCTGCAAATGTGTTAGTAATGGTTTGTTCCTTGCTT
ACATTCCAGTTGAGTTGGAGCGGATGATCGTTGGAAGGGAAAGCATCAGACGAAGCCCGC
CCACAGTTTAGAAGAGCAGAAAATTGGTGCCTGTGAGCTGCGCCCGCCATTGCGAGCGGC
TAACAGACAACATTACCTTTCCGATCCGAGGGCTTGATATGAGCTCACTCTTTTTTGTTG
ATGTACTGCCGAATCTATGTTGATGTTCCCTGCAAATGTTGCAGCAGAAATAATGCGTGT
TTTGCTTGCTAGTTACCACATCGTGAGAAGTTGCTTCTGTCTTCTTATGAGGCAACTATT
TGTACTAGTTGACATCCTTTAATCGATGTTTCCTACACCCTAGCTGTGGTTGATAATCAC
ATGTCTAAGAATGCTTATCATCCCTCGTCTCTAACCCCCTTCTTTTTCCAGTATGCCTGA
ATGCTGAACTTCAACGGTTTCCAGGGCCTTCTACATATCTGTTTGATAGGTGCGCGTCAC
ATCAGGATTTAGGTCTGGGCAATTGTGGGCTGCTGCCTGGCTGAGCTCGCAAGGGATCAC
GGTCCACACATGATGTCCCTTTTCCCCAGTTTTCCACCAAACAGGTAAAAACCTGTGCAT
TTTGCCTACCTGGCCTCGCTGGACACTTGGTTAGCGTGCGCTGGCGCCTCTTTTTGCGAG
TTCTCATCTTCTTGGATCAAGCTCGCACCATGATAGAAGTGAGATAACAAAATCAATGGA
ATCCTGGGACCCCGTCACCCCCTTTGTCTTTACTGGCATAGTTTGCACACCAATAAGTGC
AGCTCTCCGGTGAGAGCCAACCGAAAAAGTTGCGTCCGGAGGATGGGCAAATCATCAAAG
ATTTTGATCTGAAATGACGTCTTCCAAGTTAAAATTTTCTGCCGGACAAGCACTGCTGCT
GACTACCGGGGGGTCTCATACCGAAATTATGCCATTTTAGGTGCCAGGTTTCTTCTCCAT
CACACAGAAGAAGAATCATGTTGCTTATGCAAGTCTAGCCTAGCTAGCTAGCTACATCCA
TCTAGGGGAGGGAACGGAGAAATGATTAGCTGCTTCTTTAACCCAAAATCCGTGGACGGA
CGGACGGACGGACGGACCACCAACCTTGGACCCTGCCCGTCCATTGTTTCAAGGAGCGCT
TTACTTTCGCTCTCCCGATAAATATCAGCGGGTCCTTCCTTGCGCACATAAGGTAGTAGA
ACAGTGACCTTGACAGGGACCTGATTTGGCCCAAAACTATTGGGGAAACAGAGGTGCGGA
TCCCTCCAACCAATGCAATCTCTCTCATCAGAAACGGAACTTGTGCACCCACACGACCCG
CATTGGCCGATTCTCCCCTATCCTGTTGCCCTGACGGGGTGATGGCGATCGTCGCTGTTT
GGTTGTTGGGCTCCCCGAATTGGGCATCTTGGGTGTTTTTGCGTGGTGTGGCGCCCTTCT
TCCTTCTGCCTTTCCTTGCCAATAAGCCAACCAACGGTGAACGGACCGATTATTCGGAGC
TGTGAACTCGGAGAGGTGTGGGCATGCACGCAAGGCTTGAGAATGACACGCACGTCCGTT
TCACCGTCTCGGGGTTTGGATGGCTGGGACAGCGAGGGGGGCATTTGTAAGCTTGTTTTG
TTTCGGCAAAGCCGCAGGATAATGCTAGGCTAGGCCGTGCTTTGATTGGATTGGACGGGC
CCACTTGCTCCCACTGTGTGTGACGGTGAACCCTGTTGGAAATATGAGTAATTTATATCA
AAAGATTTAATTAACAGAAACAGTAGATAAAGCACACTATAGTAACAGAGATATGGCAAG
TCATGTGATCGAGTAGAGAGTAGGAGAAAAACATTAAGAATGTGAACTTGAACACATCAT
ATCTAGTGTATATCCTGTTAGAATTAATGAGCTTGGCCCATCTATAAAATTCTAAAATCT
TAAATTGAACCCATGAATAAAATGACAAATGGTGGTGTTAAAGTTTATTCCATACTGCTA
GTGGAGGAAGTGTAAGACCTCTTTATATAGTGAGTTCTCCCCACCACTCTNNNNNNNNNN
NNNGAAGAGAAAGGAGAGAACCACATGCGTGCGCTCACTCGCCTCGCCTGGCCGGGCAGG
GCGGCGTGTATGTGCGACATGCGATCCTGTACGTGAGAGGGCGAATTAGATTTTTGAAAA
GCGCTCTGCGCGACTGCTGTTGCTTCCATAACGGGTCGTCTACCTAGCAAGTCGGGCGTG
TTGGAAATATGCCCTAGA