Map Locations of contig_6718 (8484 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_6718

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_75125 1 951 bp AK366148 Not available Available None
MLOC_75124 1 431 bp AK356381 Available Available None





CDS Structure of MLOC_75125






CDS Structure of MLOC_75124






Contig Sequence (8484 bp)

>contig_6718 8484 assembly3_WGSMorex_rbca.fasta
CGTCCCTAACCACTGCAGCCCCACCAGCGCCGCCAGCATGAAGGTCGTCATCGAAGTGGT
GCCGGCTTCCTCCTCGCCATCGTCACCCATGCCTGCAGCGGGTCCCGACGCGAGCAACCC
GCCACCACCCTCCTCTACCGCATCCTCCGTCGGGGCCACAGCAGGATTTGGCCTCGTCGC
CCTACTGTCGGCCGGTCTCATGGCTTAGAAATTATAATGCATATTTCGGCTGCATGCCGA
ACGCACATAGGAGTATGAGCTTACTGTTTGACTAGTTATTACTGGCGAATATATACATGT
ATTCTTGTTTAGAGCGAAGATGTAAGAACTACTCCTTTGTATCTCTCATGTTTGTATGTA
ATCTACTAGTCTTTAGGCATTTCATTTTCGTATTTGTTTTGGAGGTTAAGTTAATAAAGG
TGCACCATTACATGCCTAGCAATAGCAACACCGTTTAGTGTTATATATATACATCAATCA
ACGTCATGAAATAATAGGCACGCGTTGGAAAGCGAGGAGAAGCCGCCTCCCGGACTTCTT
TTAACATTGACACTTGAGATATGGACAGAAGAAGCAATAAGATCAGATTTTTTGTGAAAA
TATTAGTGCATAGATAATACATGTTAAATCAACTTAGTTGTGGAAATACTAGTCATGCCA
ACAAACTTGGAGAAGGTGCACGGGAGGTAAGTTGGATGGAAGTAGAACATCCTTCCGGCA
GAAAACTGCGCGAGCGCTTCCTGCCTTTTGTTCATAGGGTCAACGGCAAGCACCCATGCC
CCTTTGTGTCCTCAGCCTTAACACTTGGACCTCATGTAGTTAGGATGTAAGTGCGTGGGA
CTTGTCCATATTGGCCATCACTTTTTACGTGGGATTAAGTGATAGCCCAGTTAATTTTTA
TGCGGGACTTATAGCGTCCATATACTGTTTATATACTGCAACATTCATACTTTTTCAGAT
AAAAATACTCTAAAACTCTCTTCAGAAAAAATAGACTTTCTAAGATAAAAATAATGTCCA
TATACTGCAACAATATAGACTTTCTCAGAGAAAAATACTCCGAATCTCTCTTCATATTAA
ATATTTATCTACAGCTTACACTCTCTCAGATAATAATTAAACTAAAGGATAAAATTCATA
CTTTCATAGTACAAGAAAGAGCAAAATCCACAAAGCAACAGCAACTTGCACCATGAATCA
AGCATTTTTCTTCGCAGATGAAATGTATGCTTCCATCTACCACCTCAGCAACTCTTCCAT
CCTACCATGTATGCCTCAACCTGAGTCTACATCTGTAAAAGTTGGCATGGTTCACACAAT
TAAACTACAGTTCATAGGAATTAATATATCATAATAACACTTTGCTGGGCAGTGAAACTA
AATTAACTGCTCTCAAAGACTCAAATAGTGCAGCCAAGCAGAACAAATAGACTCAATCTT
TATCTTTTTCAGTTTTCATGTACTTGCTTAGAAGCATAGAAAGAAAATTCAAGTTTGGTA
AATATATTCTAGAGTCTAGACAAGAAACTTGAAAGTAAATTCGTAGTGCANACATACCTC
AGTTAATAGTAGTGGTCTTCCTGAACAATGTCACATTAAACATCATATCTATACTAATCT
TGGAGGCACATCAAAGCTTCGACAGTCTTGTTGTTCAGTCTACTTCGATAAGATAACGCT
TGGACATTTTTTTACAGAAGATTTAAGCAGCAAAACAAATTCAAACAGTGTAAATCTGAG
TCGAGAAAGATAAATTGCACACTTGAATTAGATTATATTTTCACGCAACCTTGAAACATG
TACTCCCTCCGTTCCTANATATAAGTCTTTCTAGAGATTTCACTGATAAACTACATACGG
ATGTATATAGACATACTTTAGTATGTATATTCATTCATTTTGCTTTGTATGTAGACGGCT
AGTGAAATTTCTTAAAAGACTTGTATTTAGGAACGGAGGGAGTATGACAAAAAATACAGT
CCATTACTCTAACTACTTATATGTAAATATCAGCAAAAGTACTATATGCAATTATGCGTG
CAGTGAAAATGAACAAAGTGTAGCAGTATCATGCAATACCTACTCAAGCGAGGTTGATTA
CAGGGACTAGAACATCAATCAATCAATCGATCTAGCAAAAATGCAGAGCAAGTTGCCAGG
AATTCAGCGGACTGTCCCTCCCTCATCTCCACAATCTTCAGTACTAGCTAGCTGTTCCAT
GAAACAATCACACATGTAGATCGAGAACATCAGCGTCGACGTCCCATGGCAAGGTAGCCG
ATGAGCCACGAGAGGTCGGCCAACACCTTGTGCCTGTCGCTATGCCACGGTGATGTGGAC
GAACAAGAGGGATACGCCCGGTGCGGTGGCGAGCACAGAGGAGACCTGAGACCTCGATGG
TAGCGCCAGTGCTGGTCGAAGCCACGGTAGCGGTAACCTCGCTGCAGCTGCAGATGTATG
CTGCCGTGCTCAAGAACATAGGAATCTTTTCCCTCGAAGAGGCAAATCTTAAGCGAAGAG
TTATAAGCCTTGCCGCGTTAGTGAGGGCAAGGAAAAAAACAAAGCTCGAGGATGAAAAAT
CTGAAAGAGGGAGACGCCAACACAACAAAAATTCATCTTAGAGTCAATGCAAGAAGGAAG
AATTTTTTTCATCCATGGGCTGAAATCGGGACAGGGCTGGATCACCTCACATGACGAAAA
GAAAAAAGTGGTTCAAGCTCATTTTAAGGAAATACTGCACAAGGACCCACAACAAGTACG
TGATTTCTACTGGGATGCCCTTTACTTTGACGATTGTGATCTTTCTATCTTGAAAGGTAA
TATTACAGAAGCGGGAAGTGTTGGTGGCCATAACACAATTGCCCAGGGATAATGCTCCAG
GGTCAGACGGGTTCACATGTGCATTCTCCAAATCATGTTGGACGATCATCAAGATGGACA
TGATGAGCGCTATTAACTCCTTCCCAACCTGTAGACCACGAATCTGCATTGGCTAAACTC
GGCCTCCCTAAGAAGGAAGAGGCAGAGCAGATTGCAGATTTCCGTCCAATCAGCCTTATT
CATGCCTTCGCCAAAATAATTGCCAAGATCATGGCCATTCGGCTAGCCCCTTTCATGACC
GTTTGGTTTTCAGGGCGCAAAGCGCATTCATCAAGACTAGAAGTATTCACGACGACTGCA
TGTTTGTGCGAGGGTTCACTCGACGTCTGCACAGGACAAACACGTCATCCTTGCTCTTCA
AGCTTGACATTAAGAAAGCATTTGATTCAATTTGCTGGGATTATTTGCTGGATTTGCTAC
AACATAGAGGTTTCCCTTCTAGAATTAGAAACTGGGTGGCGGCCCTTTGGGCATCATCAT
CCTCGAGGGTGCTCTTGAATGGCGTACTGGGAGACCCCATTAAGCTCGCTAAGGGGTTGC
GTCAGGGTGATCCACTATCTCCTTTGCTCTTTGTCATTGCCATCGACCCCCTGCAGCAAC
TGCTCGCCAAAGCAACGGATCAAGGTTTACTGCATCGTTTGTGCGGTCGTGCCACCACCT
TATGCACCTCCTTATATGCCGATGACGCAACCATCTTTGTCGCCCCCATCAAAGAGGATA
TAGAACAGCTAGCGGCTATTCTAAAAAGTTTTGGAGAGGTTACAAGTCTGGTGGTGAACC
CTCTTAAAAGCGTCGTGCCTTTGATCCGTTGTGGTAACTGATCTCGATGATATCCTCCAC
TGTTTTCTTGCCACCCGCATGGGATTTCCTCTTCGATATCTTGGCCTGTCGTTGTCCATC
CACAAACTGAAGATGGTCAACTGCCAATTTTTGCTGGACAAGGTAGCGTCTCCTTGGCAG
GGAAACAACATTAACTCTGCAGGGCGGTCCTGCCTTGTCAAGTCGGTCTTAACTTCACTC
ATTATCTACTTCATCACCGCGCTTGTCATTCCACATGGAATCAATGTGAGTGTTACCAAG
ATTCAGAGGCCGAAACCGATCACGTTTCAGGTGCGAAGTGTAAGGTAAATTGGAAAACGG
TATGTCGCCCAACCTCTCTTGGAGGTCTCGGAATCCTTGATATGGACAAATTCGCAAGGG
CGCTCCGCCTGCGTTGGCTTTGGTTTGCTTGGATGGATCCTCAAAGGGCATGGGGGTGGC
TTCGAAACTCCGTGCGATGACAAAAGACAAATATTTATTCTATGCGGCGACAACCATTAC
CGTGGGCAATGGCAAGAAGGCTAGTTTCTGGCACGCTCCTTGGCTTTCTGGTTAAAAACC
AAAGGATATCGCTCGTGGCATCTTCGCCCTCTCTAAGCCAACAAACTCTTGTGTTGCCAA
GGCAATGATTAATAATGATTGGATCCGTCAAATCAACATGGAAGGGGATCTCTATAAACA
TTATTTAGAATTCTATAAACATTATTCAGAATTCTTTGACCTCTGAAGCAGAACCCAAGA
GATCAACCTCGTCTCGTACATTGAAGATACCAATGATGGTTGCTACTCAGCGGCCACTGC
TTATCAGATGTAGTTTGCGGGTTTGAGTAACTCCGAGATGTCGAGAATGGTCTCGAAAAT
TTGGGCACCCCCAAAATTAAATTCTCCTCTTGGCTAGTTCTTTAAGACAAAATTTAAACT
TCTGACAGACTGCAATGCAGAGGATGGCCAAATTGCGGCCTCTGCCAGTTGTGCAAAAGG
GAGCCGGAATCAGCCCCGCATATTCTGTTTAAATGCCACTATACCATAAGAGTCTGGAAT
GTGACTTATGATTGGATGAGCATACAGTCTACAACACCATCATGGAGTGATCTTCAAACA
TGGGCAAAACTAATGTTTAGCCATGCGAGTATGGTCGGGAGTTGCACCATCTGCTGGTTG
GTTATGAAAATCCATAACCATGGACAAAATGGACATGTGGACGGAAGTATTTCACAAACT
AAACTGTATTTAAAAAAATCGTTCAGCTGATCTTTTTATTTGGCTTCTGATAGTCAAACG
TCACACTACATTGTGTGGCGCATTTATCTTAACCGCCATACAGTGTAATGCGGCACCTTT
GCCTTAGACGCCATACTAGTCTCGGACGCCACACATCATAGTATCGGACGTCACATGGTA
TAGTATGACGTCTAAGGCAAATGCGCCACAAAAATGGGTCAGACGGATGAATTTCTTTCA
CGCACAGTTCATTTTATGAATTAGTTACATCCTTAGGTCAAAATTTTCCATTTTGCCACA
ACCATGCGAGTAGGGTCCGGATCAAAATCCCACAGTACCCTCTCAAACTTGCAAAAACAC
AAAGACACCCATTTCCCCACAAACATTTAACATAGTATAAGTTGCAGTCTAAAAATATCA
ACTGTGTCGTATTCTGAGCTCAACTGCCGTCAACATAACAAATAACAATCAAAACTAATG
TTGCCAAGTAGTAACAGGAACGCAGGACATCAATCAATATAGGGTGAACCCAAAGAACTG
CCCAACTAGAAGAGCTAGCCCCATGCATACAGCTACAAGGGAGGCAGCCCAGGTCAGCTT
CTCCGTTATCTTAGGTATCCTGTCCTTTAGAGCCTCGCTACAAGAACCTACAAAAGCGGT
GTAGCTACCCATCGAAAATACAGTCCCGACCAAGAACATACCGAGGTACGCCGCGCCGGC
AAAGCGTGACGGCAGAGCTAGCGCTGGCAAGACCATCAGCAGAGCATCTGGCTGGAGGCC
ATGGACGACTCCGGTGGCAAATGTTGTGAAGCCAACTTTCTTCTTCCTGGGAGCAACAGC
AGGGGACTGTTGCAAGGGCTCACCGCCACTCATGTCTACACCCTCCAGAATTAGCCCTGA
TTCTTGGACCTCTGAAGCTTCCCGGATGCCCGTCGCGCCTATCATAAGAAGGGTCAGACC
TACAACTCTTGTTCCCCATATACGGAGAACCTCAATGTGCAAACGATCCTTGAGTAACAA
GAAGAGCAGGCCAAAAATTATTTGTCCAGCATCATGACCACAGCCCCAAAGGGCACCGAC
TAGTCCACTCTCCAGTCTTGATCTCCCAATTGATAGTGGTGCCAATGCAACAAGATGGTC
AGGCCCGGATAAGGTATGTAAGCAGCCCGCGAAGAAACCAGCCCAGCCGCTGCTCAACAA
CTCTGTTGAGAGGAGTCCACCAGATTTGATTACTGTCTGCACCGATGCATAGGCAGGATG
GGGAATGCTAGAGTGGAAGGCACTTGCAGTAAGTGTCATAAGCAGGACAAGGGCAGCAGT
AGAAGCCTGTGGAACAGAAAATATCTGTTAAATCTGAAAGTAAGTGCCAAAGAAACACAA
AGAAAATTAATAAGAATGGCATAAGCTGTTATGGAATAGATGCCACAGTTTCCATGCATA
AACACAACAAAATAGATCAGAAGGCAAGAAGAACGTAATGGTTAATTAATTTCAGATGAT
GAAGCGTGTATTCAGATTTAGGGCCACAGCATCATAAAGTACGACAAAATACTATACCAT
AACTTACATAGAATCTCAAATGAGCACATAAGCCCTTACCCACTTCATAAATGAATGCTT
CAGAGCATCTACAACCGGACGCCTCAAACGACCCCTCATACGCCCACGGACGCGCCCGGT
CAGTGACCGGACAGGAGAGAGAAGGAAAAAAGTGACTCAACCGGACCCTTCAGATCATCC
CTATACGCCCGGGCTGTCCACGAACCCTCATATCCATCTCAAATATAGGGAGGATATGAG
GGCTCGCAGACGCGCCCGGTCAGTCCGCAACGTAGGACGCGACCCCACCTCGAACCACCT
TTTCTTTTCCTTTATTCATACTTTTCTTTCTCTCTCTTCTTCTCCACCAATCACGTGTGA
GTGACCGGACATATGAGGAAGAAAATGAGGAGTGTGGCTGCGCGGANNNNNAAATAGGGG
ACACGCCCGGTCACTGACCGGGCGCGTCCACGGGCATTTGAGGGGCCAGATTTGCAAGTT
GCGGTTGTAGATGCTCTCATAGTTCCATTCTAAAAATACTCTTTGTTTCATCTAGCAATA
TTAAAGACAATATGTGATTCTGTACCTTAAGGTTTTTTAAGGTACAATATTACAGCGTTT
TTTTTGTGTGCATGGGAATACTATATTACCAAAGCGCATACTAGTGCCAAGAAACAGGTG
CAAGAAACAGCTATTCGTTGACTAGAAATGGTTGAAGGTAATAGTTGCCCAAAGGTCGCC
CGAAGCTTTGATGAGATGATGATATGCCATAATGTACTCATTTCTTATTTACTCTCTCCG
TTCCATATTAAGTGTCGCTGATTTAGTACAAAGCTGGACAGTTAATATGGAACGGGGGGA
GTAAAAGTTTATTCATCGTTGTTGTGGTAACAGGCTTGGTCTCTACTAAGAAACACTGTG
TTTTAGATGACTATCATCCTTTTTCAGCAGGCTTTTTGGCTGAGTTTGGTACCTGTGGAA
ACTAGTATATTCTATGTAAACTGCCTTGATTTTATTAACATGTTTCAGAACAACTCGTAA
CTATCATCCTACAAACTTGCAAAATAACTAGTTCATATGGTTAATGGTTTAATGTCTTTG
GAAAATAAATTGCCGAGAGAATGTTCGTAGTGAATTTTGAATATAATAACTACAGCTAAC
ATCGGATAACAACTGTCGAAGATATTCAGTGGGACTAATCAAGATGTGCCGTTTTAGAAG
CTCAGTATTTGCAACATCATGGTTCACAGGTTCAATGAAGTGCTGAGACAATGTCCTAAT
AATAATAAGCTGCAGTTCACATGATTCTACAAGAAATTTTGTGTTGTATCATGTCATATA
CATATTTCACAGGTATATGACTTTAGTTGTTACTTCGTAGTTCATTTCTTTGAGATACAT
CACCTTTAATACAATTCACATTAAAATCCACAAGACATTTCCTCCGGCTTAACACAACTA
AGATTGTTTCATGTGCAATGCCCATTGCCTTTGTCTTCCTAGGTGTAAACTGCAAAATAA
AGCCCAGCTGACACATCCTCTTTTCAACTAAAGAGACTAAGCGAGAATTTCAACTTGTCA
CCAAGCACACCGTTTCGATTCCTCCTCTATCTATAGGATCTAAATATATAATATTTTCGG
ACGTATATAAAGAAATAAAGGTTGTTTGGAAGAAGCCAGGCCAAGATGGCAAAATATTCC
ATGGAAAAGGGGATATTTCTGTCTCATCCACAGGCGCATTAAATACTCCAAGCTGTAAGG
ATCTAAGGAGTGGAATTCCGAACAATTTCGTGGCTATTTCTGGTAGTAGAATTTTCGTGC
ATAGGCCACCAGTTAGAGCTAAATTTCACTACAGCGGAGCTGGGGAACCATCTTAGCAAT
CCTGTGACTCCGAGAACCGAATACCTCTATCTGGATAAGAGAACGGGAATTTGAAATTTC
CTCTCACCTTGGGGAGCAGGCTCCCGAGCAGCTTCCACGGAGGCCCAGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCTCCAAGG