morexGenes - Barley RNA-seq Database

Contig contig_66993
Source Contig contig_66993
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_66993 (7809 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_66993

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75033	16	4954 bp	MLOC_75033.5	Available	Available	LOC_Os10g11590.1, FRAME:+2, EVALUE:5e-49, 13110.m01052 protein expressed protein
MLOC_75034	7	4589 bp	MLOC_75034.1	Available	Available	LOC_Os02g29400.1, FRAME:+2, EVALUE:6e-25, 13102.m03203 protein expressed protein
CDS Structure of MLOC_75033

CDS Structure of MLOC_75034

Contig Sequence (7809 bp)

>contig_66993 7809 assembly3_WGSMorex_rbca.fasta
AATGGGTCGACATGACATGCCATTTGAGGGGAAGACTATTGTGTTTGCCAGTTGTCCGAA
AGGGGACTAGGCCACAAATAACCGATGCGACTCTACGGAGGTCCTACCTATGGGAAAGCA
TGTGGCAACTAAGACTGGTCCATAATATGAGGGCTCAAAGTGATCAATGGTTCACTGATT
TTCTATTACGAGTTGGGAATGGAATCGAAGAGGTTGATGAGAATGGTAACATACATCTTC
CAGATGAAATTTGTGTACCATCTACTGGAAACGACACTGACCTTGATAGGTTGACAGAGC
ATGTCTTCCCCGGTCTAGGTGAGAACCTCACCGACCCAAATTACATCACGTCTCGGGCCA
TCCTGTCGACCAAGAATGATAATGTTGACATGATAAACATGAGGATGATAGAACGTTTCC
GAGGTCAGGAGATGATATATTATAGCTTTGATCGTGCTGAGGACGACCCCCACAACTACT
ATCCTCCCGAATTTCTCAACTCACTTACTCCCAACGGGCTTCCTCCGCATGTCTTGAAGC
TAAAGATTAATTGCCCTGTTATATTGCTGCGAAATATCGACCCTGCTAACGGACTATGTA
ATGGAACGAGACTTGTGGTTCGGGGGTTCCAAAGAAATGCTATTGACGCCGAGATTGTTC
TTGGACAGCACGCCGGAAAGAGAGTCTTCTTGCCTCGGATACCCCTATGCCCCTCGGATG
ATGAAATGTTCCCTTTTCGCTTTAAAAGGAAGCAATTCCCAATCAGACTTAGTTTTGCCA
TGACAATCAACAAGGCACAAGGGCAAACCATTCCTAATGTTGGTGTGTATCTACCTGATC
CGGTTTTCTCGCATGGTCAACTATACGTGGCATTATCTAGAGCAACTGCAAAGAGCAACA
TCAAAATTCTTGCTGTCGCGGGTAATGACGAGAATGGGAGGTCCAAATCTTCCAAACAAC
AAGGGACAACCACACGGAACATTTGTCTACAAGGAAGTCCTCAGCATGTAGAAATTTGAG
TTGATGGTAAAAGCTCAGCATGTAGAAGCGAACATGCAATGCTTGCTAAATAATTACTAC
CGTGTACCAAGGGACATAGTTGAAATTGATCAAGCTATGTATTATTTGTTCTAGATGGAG
CAACTATTTGTCTGGTTAAGTGGTTTGGGGATGCAAAGATATGCCAATTTGTTTCTTCTC
TCTCGCATAGTATTCTGATGTGAATTAGTCTATGAATTTGGTACATATAATATTTTCATA
TATATGGGTGCAAAATCACTTAATGTCATTTCCTTCCATGAATCGTACCTACCCGCTATG
TTACATTTTATAAGACATTTTTAGAGTCATTTATCCGAGAATATAAACTAATATATGACA
TTTTAGATCACTAACTGTACGTTCTCTACAGACTAATATAAGATTCTTAAGAGCTTAAGC
TATACGTTCTCTACAGACTATTTCTTTCAGCTCTCACTAATTTTGTTTCGGACAGTTTTT
CTCGCGTTTCGCTCCATTTGTTTTAAGTGCTATGGAATTTATGCTGCAATCAATCAACCT
ATCACTAAAGCAGACCCCACTGCACCACGACATGGACTATAATTTACTACCTGAAATGAG
CCCCCTACATGCAGGATTTATTTAATAACTTTGTCCTTCCCCTTCCCGATGCAATGGTAT
GCACAGACCCTTGACTTGTCTTGGTACTCTTCCCCTCACATGCCTGTAATGCACCCTTCG
AATATTTTAATAATACTTACCTTTTCCCTTCCCAGTGAATGGAGTACTGCGCAGCCCATC
ATTGCCTCTTCTCTCTCACTTGGCTATTATATTGTACCATCTCTCCGAACAGCTAACTCC
GGATTCCAAGGGCAAGTAATCGATTCAAGCCTCTGAATCGATGAGACAATACCAAAGGAT
TGAGCAGATCTCCTCCCAGACCAGGAACTATCCGGATGGATCTCTCTCTCCCTCCTTCTC
TCTCNNNNNNNNNNNNNNNNNNNCCCCCTCTCTCTCTCTCTCTCTGACATGTGCTCCTTC
CCAATCCAATCGCAGATGGATTTTCAGACCAGAGGCTTGCTTTGTGTGGGAGTGGATCGA
ATCCTGACCCGTGCAACTCCATATCGGCACCCCTGCTTACTCCTCTCTATATATAGGTGT
TGGTGTGTTGTTTGGCACGCCATTCTCAAGCAAGCCAGCTGAAGATTGCTTCGAGAAATT
TGGTATGTTCTACCACTTAATTATTTTGCCTATTTGTTCTTTGCTATGATTTGTGAATAT
GCTGCTATAATCATATGCATGCAATCCTTGTTGAATTGTGAGTGCTAAGTTAAAACCGTT
GGTTGTTCTTTTGCTAAGTTAAAACTGCTTAATCCTATGGTTCTGTGGTACCTTTATTCA
CAGTTCTTCTTCCAGGACAAGATGAGGCCACTGAAGCGTAAGAGAGTTGAAGCGCCACGC
ATCCCAACACTCGAAGATGTGCATCTGTACACTAGGTGGAATCTGTGTGTCCGAGTGTAC
CACAAGTTCCATGTGGAGAGGTTGTCTCCTGGTAGAAAGCGGCTTAACATGGTATTATTG
GATGAGAAGGTAGTCCTCATGTGCACATTTAGTTTCAATTGTAATAAATAATATTAGTCT
AAAAACATTGGATTGTCACAATCTATTTATGTATTTATTAATAGGGCAAGAAAATGGCTG
CTGTCGTATATGATGAAGATGTCGATCGATTTGATCCTTTACTCGTAGAGGGGCGGGTAT
ATTATGTGTGGCAGATGCTCGCAGAACCAATTGTCAGAGATGGGGACTATTTGTTTGCAG
ATAGTCACTTTGTGTGTCGTTTCAGCTCAGTGACAATAATCAATGAGATAAGAAATGTCA
ATGAGCAGCTGATCCCATTGTTCCCTCCATTTATGCCTTTTGACAAAGTTTGGGAGTTCA
CCCTTGATAATAATACATATGTTGGTAAGTTAATTAGTTTCCTTTTATACATTCTAAATG
TTCTCTTGTAACACACCATCAACTATAATGTTTTTCCATTCAAATGCTAGATGTCATTGG
CATGGTTTTGTTTGTAAGTTCTATGGGACACGAGGACAGTTTCTACAACCGAAGGATCCC
AGTGAGAAATATCGTTCTGCTAGATGACACGTATATCTATCTTATGGTTTAGAATTATTT
GAATAATTCAAAGATTTTATGTTTTTCTTCTAATATTACTTGATTTTGTAGCTACAATAT
TGTCAAGTTAGTTGTATGGGACAAGTTAGTGACTGATAATCTAAGTACATGGGAAAAACT
GGCCGAGGAGCGTGCTATTGTCGTGGCAACAATGCTACGTGCAAACCGCATTGGTAAGTT
GAGTTCATGCATTGTTCTATGGACATAGTACCAACAAAAAAAAATTGCTAATAGATTTAT
GATTTGTCTTTAATTAACTAGACCGTGGCCTGCATACTACGGACTATAGTAGGATGCACT
TTGACCCGAACATCATAGCCGCACATAAACTGAGGCAAAGGTAATTGTAAATTTAGTTGA
AGTTATTTTTTTATATGGTATACTAAAAAATCAGAATCATTTTTGTGTAGGATCAATAAT
GATGTGTCTGGACCAGTATCTCCATGAATCAAAAGAAGATGGAGAATGGAGTCATGAAGC
AAAATTGGAGAATAGGAGAATGTGTTGCATAAGCTAGACTGAGCTGCTTTTGGATTGTGT
TAATCGGCTTTTGCTTAAATTTGGGTGTATGAGTCGTTAAAAATCTGTTCGGTGCTTTTG
TAATTGTTGATGTAACTGAAACTGAGTTTCACCTACAACGTGAAATCTTATGATGGTGTA
ATGCCAAGACAACTTCGTCTGAGAAATCAAGTTGTTGTGTTTTCTAGGCAAATGAGAAAT
GTAACCTTCAATGCATGACGCATTTGAAAATAGTTGCGCACATGCATATAACTGCTATTT
TTTATGTGGCTAAAGCCTAACCATATCTTAACAAAAATGCAGTACTACATTGATTTATAC
TTTTGTTGTTCCATTTCATTTTATGTGATTCCGTAGCGTAGCACGGGCATCTTACTAGTT
TCAGCTAAAACTAACGCAAAGCATGAACAGCTCTAGCCTGGTCATCAGAAGAGGGGAAGA
AACGAACATCTCTAGCCTTGAAAGTAGTTGTGGTGAGATAATGCAAGAAGCCGCATACCT
GAAGACCCAATATTGAGGCCGTTGGTAAGAGGAGCAGCTGGAACATCAATTTCAGGTTCA
GGCTTGGGCTCTTGTAAGAAGAGAGCATCTTGGGAATTTTCATTGACACCCATGGGTCTG
TTGATGAGGGAGGTTTCATTATCAGTGTCATACCGAGCAGCGGAAGGGTGTTGGTCATCT
GGATCTGGTGTGGCCGACGTTGAGTTGTGAGGTTCGGACTCTTGGCCCGTCATCTGATGT
GAAACAGCAATTGGGAAGGCTGAGCATCAAGTGGTAATTATCACTAGTAGTAAAGAAACA
GAAAGTAGAGTAGTAGCATTTGTACATGACGGGCAGCGGCAGGCATTGGTTGATTGTTTT
GGGCATCCAGGATGGTGTCAGCAAGGATGCGGTAGCTCTCGTCCTCGATGGGCGCCCAGT
TTTTGTCAAAGAGGTGGTAGAGGTGCCTGAGGACCGGCTCAACCTGCTTCTTGGAGAAGC
CGAGACGCCCCATGGCCACATAGGCCTTTTGAGTCTTGTCCTTGTGGGAAACCATGGCCT
TCCTATGATGAAATGTCCCACTGCTACTTGACTTGTGCTGCAGAGAAGGTTTCTATTTGC
ACTATCAATCAAACCCTCCTCCTAAGACAAAGACGAAAAATAAATAGACAAATTCGTTTA
TGAAACCCTAGGAGAAATGAGGAATGCGCGAATTTGCATCGAATAACGGCTGGATAAGAA
GAAACCCCAATCTTGAAAGGGCGTCAGGTTGTACCAAGAAACATCCATCAGTAGAGGGAG
ATGGAGGGAGAGGGAGAGGGAGAGAAGGGGGAATGCACCCACCTAGGGCACAAGAAGAAA
AGAAATCGAAACTTTGGAGCCTGCTAGAAGAAAGGATCGATGGTCACAGACCTGCACGTC
GCAAGGCAAAGTGGGCGAGTCAGGGGTTCTGGGGCGGGGCGGGTGCGAGTTGGAGGCTGG
CTGGGGTTTCGAGGCGCAGGAGTCCGGAGGAAGACGACGAGGCCAAGGGAGACTGCCTGC
TGCTGCTGCTGACTGACTGACTGACACTAATACCGTCGCCTTTTGGGCCTGCCCTTCTCA
CGGGCCTCTTTAGTGATGATAATAATAAGCCCATAAAAGGCCTCGCAAGTCCAGTCCAGT
CCAGTCCAATAAAAAGGAGTCGTCCTCTTGCTGGAATAGAAACCCTAATCGAATCAATCC
CTTCCATCCAGTCCAGATCAAAACAAGGGAGAGGGCATGGCGTCGTCCTCTGCTGTGAGC
AAGCGCGGCGACGCGGGCGGCGTCCTGGCTGCGATCTCGCGGTCTTCGGTGGCGGCGCAC
GGCCGCGAGGCCGCGGCGGTGGCGGGGAAGCTGCTGCGGAGTACGGGGAAGGCGGCGTGG
ATCGCGGGGACCACCTTCCTGGTGCTCGTCGTGCCGCTCATCATCGAGATGGACCGCGAG
CAGCAGATGGTCGACCTCGACCTCCAGCAGCAGGCTCTTCTGGGCTCGCCGCCGACCCTC
GCCAAATAAATCTCTCCTCTTGTTCGCTTCCGTCCTTCACATTTCATTTTGCCTGGTATC
ATAAGTTGTCGACAATTTTATCACTAGTGTGTCTGTGTCTGTTATCGGAGAGAAAGATCA
TGCCTTGTTGTTGTGACTGTGACTGCTCCTTCTCCTGCTCGGTACAATTATCGCAATATC
ACCAGCTTGTCTTGAACTCGGTCCTGTGTTTGTTTATGATTGCCTATTTAGATACGTACA
CTACATACATACATATCATTCCTTGGGGACGATTCTGACTTCTGATTGTAACAATGGCCC
ATAACCAGAACTCGGTCCTGTGTTTGTTTATGATTGCCTATTTAGTATCTTTCTTTACTC
ATACGATCCACCATGAATGGATCAGATTCCACTATCAAAAGGATAACAGAAGAGAACATA
AAAACAGCGTCTTGGCGCAAAGCAAAGCAGGTAAACTAAAGTAAGGTTATCCCAGCCGCA
ACTCTCCTGCTGCATGCAACCCTAACAGGGTAGAGGGGGGAGCCAAGGCGAAGCAAAACA
GATCTCAAAAGAGCTTGGGAAGGTATCCATCAGCACACACTGGTGCAAAATCATTGTTTG
AACCATCATCTCCCATGATCATCAGGGAAGCATTTCCTCGCTCCCTCCTGCCATCCTCAA
CAGCCTGTGCACACAAACATCAGTATGAACTATAATTTCAGCTAAAACTAACGCAGAGCA
TGAACAGCTCTAGCCTGGTCATCAGAAGAGGGGAAGAAACGAACATCTATAGCCTTGAAA
GTAGTGGTGGTGAGATAATGCAAGAAGACGTATACCTGAAGACCCAGTATTTGAGGTCGT
TGGTAACAGGAACAGCTGATGTTTTTGAGCTTCCAAATAGCCCAACAGGGCCAATATTTT
GAGGTCGTTGGTAACAGGAGCAGCTGATGTTTTCGAGCTTCCAAATAGCCCAACATAGGG
CCGCCAGGCCAATAACTTTAGATTCCTACTTCGAGGTAGGAATTTGGGAATGCACGAGAA
GTATTGGGAAAAAGCATCCAGGTCTATCCCAAGCGCCAATAGTTTTTCTCACTATACTGC
ACACATATTTCGCAGCAGAACACTGCAAAGGTGATGAATATTTTAATTCTCATGGCAGAA
TCCGGCAGTATCGCCGCCACGCGCCCCGCTGTTCATTGCCCGCCAGCCGCAAGTCGTAGC
TGATCCAAGCTCCACTCCACCGAGGCGGCCGGTGACCAGGAGGAAGACGCTCGCGGGTGT
CTCAGGCTTCAATCTGACCAGGTGCAGCCTGTTAAAATTAATTACAGATTGTAATTATAT
TAAAGGAAACCCTTGTCCAGTACCGGCGTACCGTTGCGAAGGAAACAGACACATCTGTCC
CTCCCGTTCTGAACCGATGGATCCCCAAGATCAACAGGGAAACGAGAGTGGTGGAGCGAG
ACTCGCCGGTGAGAGAGCAAGATCAACACGGAAACGAGAGTGGTGGAGCGAGACTCGCCG
GTGAGAGAGCAAGATCAACACAGAAACGAGAGTGGTGGAGCGAGACTCGCCTGTGAGAGA
GCAAGATCAATACAGAAACGAGAGTGGTGGAACGAGACTCGGCGGTCAGATGCATGGCCT
CGTGTCCTTCCTCCTCCTCCTCCGCCAAATCCGTGAGGACAATTTTCACGGCCAGTTTTT
CGGGATATAAAATTCCTAGCAAATGACCCTTGTGCTCATCAGCCCTAATATTATTGTTAG
CCGGTGGACACTTTCTTGGTACAAAATTTTTAAGCAAATACGTCAAATCCGTGAGGACAG
TTGTCAGGGTGAGTTTTTCGGGATATAAAATTCCTAGCAAATGACCCTTGTGCTCATCAG
CCCTCATATTATTGTTAGCCGGTGTACACTTTCTTGATACAAAATTTTTAAGCAAATACG
CCAAATCCGTGAGGACATTTGTCAGGGCCAGTTTTTCGGGATATAAAATTCCTACCAAAT
GATCCTTGTGCTCATCAGCCCTAATATTATTGTTAGCCGGTGGACACTTTCTTGGTACAA
AATTTTTAAGCAAATACGTCAAATCCGTGAGGACATTTGTCAAGGCCAGTTTTTCGGGAT
ATAAAATTC