morexGenes - Barley RNA-seq Database

Contig contig_66956

Source Contig contig_66956

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_66956 (2095 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_66956

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75013	6	7990 bp	MLOC_75013.2	Available	Available	LOC_Os02g58490.1, FRAME:+2, EVALUE:0.0, 13102.m06772 protein PINHEAD, putative, expressed
MLOC_75012	1	1152 bp	MLOC_75012.1	Available	Available	LOC_Os10g05970.1, FRAME:+2, EVALUE:2e-39, 13110.m00516 protein POEI12 - Pollen Ole e I allergen and extensin family protein precursor, expressed

CDS Structure of MLOC_75013

CDS Structure of MLOC_75012

Contig Sequence (2095 bp)

>contig_66956 2095 assembly3_WGSMorex_rbca.fasta
CGGTACGCAGCACCGCCCGACTTGCTTGGTAGACGACCCATTGTGGAAGCAGCGAGCAGT
CGCGCAGAGCGCTTTCCAAAAACCTAATTCGCCCTCTCCCGTATAGGATCACAAAGGCGA
CTGGTTCCGGAGAGCTGCTCTCCCGTTCGCCGTTGGATGTCGACGCTCCGGATGAGGTAG
ACTACGATGACGGCGTAAGTTGTGAGACGAGGCAAAACCTTAGATGATTTTCGGTGTGTT
TTGGCCGACCCCGATTAGTTGTATATATAGGAGGACCAAGGTCGGTTCCGTGTCGCGACC
ACGTCTCAAACCGGCTTGGTTTTCAACTCGTATACTTACCGGACAAGATATTAACTTGTC
TGCCAAGACATAAAAAATAAAACGGTAAAAGGTAGCCGCGCCCCCGCAAGACATCGGACC
GGAATTTGGTGGACCATTCAAATTATTTTAGATAGACGCCACTATTGCCGGCTCAGTTCA
TTTTTCACACAGGGTTGACACTCAGTTCACTGAAACCACATTACAAACAGAGTAACTGAT
TAGTGACGCGTGGCTCAAATCGACGGTCCACGCATGCATGCAGTGGATGGTGCGATGAAC
CGACCGAACTTTTAATTCGACACCTGCAAATTCGGCGCGCCAAAGTAGCCTATCTCTCGT
TGTCTCCCTTCACTGCGCCGGCCAACACCCTTGGAGCTGCTTCGCGCCGACGGTCGACCA
ATGGCGAGGCCTATATAAGCCATGCGTCGCCTGTTATCCATCCATCCATCCATCGGCTAG
CCTGCTACTTCACCAAGCAGCTCAGAGATTCAGATATGGCAGCTCCGAGAGCAGTCTTCC
TCGGCGTCTGCGCCGTGCTGCTGGCGGCCGCCGTCGCCAACGCAGAGGCGGCGTCCTTCG
TGGTCGGCCAGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAACGCCGAGGAGGCCT
TCAAGCGTCTCCGGGTGGCGATCAAGTGCAGGGACGTCCACGGTGAGTACGAGAGTAAGG
CGGTGGGCGGCCTCGACCGCACCGGCGCCTTCAGCGTGCCCCTGGCCGCCGACCTCCACG
GCGCCGACTGCGTCGCCCAGCTTCACAGCGCCGCCTCCAACGCGCCGTGCCCCGGCCAGG
AGCCGTCCAAGGTCGTGCCGGTGTCCGAGGGCGCCACATTCGGCGTCGTCCCCGGCGCCA
AGACCGCCGCCACGCCGTCGGTGGCGTCCCCGGAGTGCGCGTCAGCCCTGTGCAGCAAGA
CCAAACGCGACATCTGGAAGAAGAGCCACGGCGGCGGCCACCACAAGAGGAAGCACAACC
CGCACAAGCCGGAGGCCAAGGCCCAGCCGTAAACAGGCGTGCCCAAGCCGCCGGAGCCCC
ACCCGGACGTACCACCCTCCCGCCCAGCATTGAAATCCACATGATTTCGTTCTGTCACTG
TTGCTATTTATGATTTCATTCAGTGTCTGCAGAACTCAGGAGAGTTCGGAATAACACGGT
TGACTCATCCGTGTTATGAGAAGGACAGGCGGATCCGTGTGTGTGTGTGTCACAGTGTAC
CTTTTTTTTTTACAAATGTTTGTAATATCAGTGTGATTTTTCTGTGGGAAAAAAGAAGTC
GTCGTAAATAAATAAATCAAGTAATATAGCCGGTTTTCAGGGTTCAGGGTTGAAACTTAG
CCCGAGTTAGAGTTCAGAGCTGTACTATGGACTTCTCTGTCGATCCACATGTCAATAGGT
ATTGCTCATACGAATTTACCCCGAGTAACATCATATCATAATAAGCTACAACGATGTAAT
TTCTTCGTCACAAAACATGATTTGCCACGCCAAACTTAGCCAAGGACAATTTTAGGGTGC
GCTTGTTTGTTCGTTTTTCTACCCAATACCAATGTATAATGCGCGGTGCCGATTTCTTTT
CCGATCCAAGCGCTTTAAACATCGTTCCCTGACTGTTTTCCGCTCGGTTTTGACCTAGAT
TAGGACATGTACAATGATTAATAACACGATTCTATCTTAGACCCACCATGTTGTTTTCGT
TAGAAACGTTCCCTTCCTCCCCCCACCCCCCCCCCCCCACCCCCAACCCCCCGCC