morexGenes - Barley RNA-seq Database

Contig contig_66925
Source Contig contig_66925
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_66925 (8389 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_66925

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74996	1	968 bp	AK362925	Available	Available	None
MLOC_74995	1	576 bp	None	Available	Available	None
MLOC_74994	1	2722 bp	None	Available	Available	LOC_Os05g01850.1, FRAME:+2, EVALUE:2e-58, 13105.m00130 protein transposon protein, putative, unclassified
CDS Structure of MLOC_74996

CDS Structure of MLOC_74995

CDS Structure of MLOC_74994

Contig Sequence (8389 bp)

>contig_66925 8389 assembly3_WGSMorex_rbca.fasta
TTACGGGCCGGGGCTATAGGCCCCGTCCCCACTAGTGAGCGGCAACCAAACCAAAGCTAC
GATCCAAATCAAATACACCATCACTCTCACTTCACACCTTTGGAGTGGCTAGGGATCACG
TGACTGATTTGTTTTTTTCTTCGAAATGAAAAAGCTATATTTTTGAGAAGTTTGACGAAA
ATGAAAACGTTGGATTATGACAGACAAGGATGATTTTTTTTTATTGGCATGACATGGATG
CTTGAAGGTGGTTCGAAAAGTTATGTCAGCTATGATGAACTTATCATGTGATGGATGAAA
ATTTGCGGAAGATGATTTGCGAGCCTGGAGCATGTCATGCAGTTTGAGAAGTTCGGCTGG
CTTGGACTGGAGAGTCTGAATGATCGACGCGAGTCGGTTGATACAAAAGACGATGGGATC
GGCGCCAACAACATAGGAGCACGTGATGTCGATGGTAACTTCTGGGACGTGGAAACACGT
GGTGCAAACCTACTCGCTTGTGTGGCTTCGACGGGACTATGACGCGGGGTTGATTCAAGG
TGGTGTACACATTGAGCTTGAAATCGACGGAGCGGAGGGTGGAGTGATCATCTACCATGG
AGTCATGTTAAAGGTGAAGCTGGAGTGTGAAGGACTTCACTCGAGAAAAGCAGCGAGTGA
CACGTAGTTTGGACTGGAGCCCGGTTGTCCAATGGAAACGTGAGACTCGTCATTTGGTCG
ACGATGATCGATGATACTCTGCAGTGGGGGTTGAGCAGTGTGGGTTCGCGATCCTTGAGA
CTCGACCAGAACAACGGAGACTTGACGCGGTAACAGTGACGAGGCGTGCGGTATGCAGTG
GACATGAAGACGGGCCAGGACTCTGGTGGTCATACATGTGGTGAGACAACAGCGAATTTG
ACTCGGGGTGATTATAAGATATGATGAAATTCCTTCAAGTTTCAGACAAGCAATCAAGGA
AGAGCGATGATGTTGTGTTCAGTTAACTCTTATGTGTGACATCAATATGTGAGTTGTTTA
CTTTCACTCAGGTCAGAGATCGATGTGTGATGGCATTGACCGGATACTCTGAAAGTTCAG
AGTGCAAAGTAGAGTAATAGAGTGCAAAGTAGAGTAATATGAAACTTAATTTCGTTCGAT
CATTGATTATGGTCAAGAAAAAAAAAGGACTACAAGTGACAGATGGAGTCATATCGAGTC
TTGGAGTAGCGGGGATGCTCATGGGATAAACTCAAGTTCAATGTACATGAAAGTTCAACG
CCTGAACGAATTCAAGATGATGGAGAATATTCGTCGAGGTAAAGTTTTTTAGAGTTGTGT
CGAATATTGAGTACAAGGTAAGTTACAGTTGAACTGTAAGTAGTATTATGAGTCATGTTC
TATTAAAACACTTGTATCCTTGATCTCTTATATATATAAGAGGATAGCCACACAATATAA
CCTATGGCAACATAACATAATAGTACAAGGGAAGCCAGTGATGTGTCTCGATGCCCAGGA
CGACCAAGGTGCGGTATTCTGACGGTGTCACGAAGAGGAGTGCGGTATTGCGATAGTGTC
ACGAAGAGGAGCCTCCGTAGTTAGGTCCACGGGTGAAGGCATGTTCATGTGATTGCTTGA
TCCTTAAATGATCAACTACATGTTTTGGATGTCGTACTCGTGTGATTGTTTGATATTCTG
ATCCTTGAATGATCAACTACATGTTTTGGATGTCGTACTCGTGTGATTGTTTGATATTCG
GATGATCGACTACCTGCCTCCGATTTATGCTCAAAGATCACCTAATTTCCGCTTGTCAGG
CAGCCATTTTGCCATTTTCAGCTACTCCAATGAGTCTTTACTTCAAAAATGAATCTTTCC
AGCGAAAACGAGAAGAGCGCTTTATTATCGGAGAGAGGAATGCCATTTTTCTCTTGATCA
TGTCCATCCGGACCACAAATATGTCAAGTTTTGTGTATGCAAAATCTGCACTGCACTCAA
AATCAGAACATTTTATTTTCTCATCTCTTCATCGCCAATGCTATTGGCGGTTACACAAGT
ACAGAAACGGCTGCGGATATAGAAACATACGTTTAGGCTGCAGAACTCGCACACACATCA
ACCAGAATGGCTCCGACTCGAATACTCAGCCGGAGATCTCGATGGCCTTCACCTCGGGCT
TCTTCACCTCGGCCTTGGGTACGGTGACCGTCAGCACACCGTTCTCCAGTCCGGCCTTCA
CCTCCTCCACCTTGGCGTCCTCCGGCAGGCGGAAGCGCCTCACGAACTTGCCGCTGCTAC
GCTCCATACGGTGCCACTTGTCGTTCTTGTCCTCCTTCTCCTTAGTGCGTTCGCCGCTGA
CGACGAGCACGTTGCCGTCCTCCACCTCCACCTTGACCTCCTCCTTCTTCACGCCAGGAA
GATCAGCCTTGAAGACGTGCGCCTCGGGCGTCTCCTTCCAGTCCATCCGGGCGTTCGCGA
ACGCAGCTGTCTCGCTGTTGCTGCCTGAGATCGCCGGGACGATGGAGCGGAAGGTGTCGA
AGGGGTCCGCCCAGAGGTCGGCGAAGGGGTCGAACACGTTGCTACGCCTCACGATCGACA
TTGTAGGTGTTGCTTTCGATTTTGTACCTGAGGGAAAATTCAGTATCTCGGATCGTAGGT
AGGATGCTGTCTGCTTTTGCTTGGCACTCGGTTGAGTTGGGAACTTGGGATGGAGGACGA
CGAGACGGACGCTGGGTAATTATAGTGTCGCCGGGTGATGCTCTTGAGGCGTCTCGAGGT
CTCTCCAGTCCAGTGGACGAGCGTTCGTTGGCACTTTATTATCGCGCGCTTTCCAGCTTG
GTTGTGAGCTTCCTTTTCCTTCTATTTTCAGCCCATGAATGTCCTACCGTGTTCTAGACT
GCTCTCCTGCTTTGGTGTTGGTGGGTCTTTCAAATTACTTTTCGTTGTACTTCAGCTCCC
GCACCCCGGCGAGTACTCTAGAATGCAGTGGGGCCTTTTCTAAGAAGACATGGCGAACCG
AATATATGACTCTAATAAAAAAATTAAACATAAAGAGTTACTTACACGCTGATTAGGATT
CTTTCTTCCTAACTAACCTCTCTCCTCTGATTTTCAAGGGGGTGGGGCCTCATCCCTCTT
AACCTTCAATCAAAATCTACCTGCCTATAAAACCCCAATAAACTTATATACGTATAGCAT
TACTGCTCTAATAAACACATGCGCCAAACGAGAGTCTATCACCGGAGCTACTATTCGGGA
GTGAATAACATATAACTACTAGTTTACAGGTCATGACTCCAAATAATTATCGGATTTTAT
TTTTTCTCAAAAAACTACAAACGCGTGGTCCGCTGTTTCAAAAAACCCAAAACCATGGTG
ACTAGTGATTTAACCCTTTTCCTGAAGGGTTGGGCCCACCGGTCAGGCCAGCTGGCCCAG
CGCGGGGACGGCGTGGCCGTTAACGGCCTTTATGATGATGCGGTCCGGTCGGGACGAAAC
GAGCCAGCCGCTCGCCCTCTCTCTCACTCTCCCCCTCCTCTCTTCCTCCTCTCGCCCGCT
CTCTGACCTAGGTGCGATGGCGGCGCCGCAGCGAGATGTCGGCGGCGGCGTGCCGCAGCT
AGTAGGCATCACCGGCGAGGAGTGTGGTAGGCATTCAGAGATAGACAAATGGCTAGGTAG
CTCGAGCTTCCCGCCGCAGCGGTCGCCGCAGCCATCACCATCGGAGATCCAGCTTGATCC
GGCATACCGCGCGGCAATGGGAGTGCCGAGGTGCATCCACACGGATCCAGAGGGGGGCAC
AGGTATGCATCGTCGTTTGGTGGAGTTAGGTAAATAATTTCAGTTTCATTCATTCATACA
TTTAGTGTAGTATAGGTTTGGTGGAGTTAGGTAAATAATTTCAGTTCCATTCATTCATAC
ATTTAGTGTAGTATACGAAGGTGAGGCTGGGAGGTGAGGGTGGGAGGTTTAGATTAATTT
TTTTGTTAGCATGTTCATAATATTTCTATTTAATCTCATATAGCTTAGATGATGAGGTTT
GGGAGGTGAGGATGCATTTTCTAGGCACAGACAATATGGAGAGAAAGTTTTCAGTTTCAG
ATATCAGTCATTTGACCTTATTACGACTGGTTGAGTTGGAGGGGTATGGACTGGATGCAT
ATTTGACTTATGTTTAGGAAGAGGGAAAGGGCTTGGAGGGGTGGAGGTCCTGGATAGTGA
GGAGAAAGTAGTGGAAATGGTGAAATTATTTGTTGATAAGAAGGTCCTCAACATCAGTGT
AAGAAAAACCATTGATCCAATCCCAACAGATATTAATATGGATCACATCTTGCTTGAGGA
GCAGATTCCCATTAGTAATGTTGGTGAGCCAGTTGTTTATAGTGTTTCTCCACAAGGTGT
GCTTCATCCTTCTTCTAATTCATCTTTGCCACCGATAATCCCTGAGGAGCCCTATCTTAA
CACACAACATAGTTGTAATTTCAACAAGGGGAAAATGCAGTGGAAGAAGAAGAATAAGAT
GAAGATGAGATGGACAAATCTTCTTCAGATTTTGATTTTTTTCAATGGTGATTATAGAGG
GCAGAAAATGTCATACAAGTCTTGGTCCAGGGATGAAGATGAGGCTAGCACAGGGACAAG
CCATAAGCAAAGGGAAGAGGAAAATACTGCAGAGCACTATTTTGGTGGTAACTCAGAACC
TTCTGAGTTTTGGGAGGAAGAACAAATCATTTCTGAACATGAAGAACCTTCAGTTGTACC
AAAGGAAGGAGCAATGAAGCTTAAGCCTGTCAGAAAACCAGGCCCAACAAGCAACTCACA
TAGTGAGCCTGAACACCAGAAGTTTGAAGATTTTGTGCCAGAACCTAATGAATACTGCTT
TCCAGGTGATTTTGGAATTAGTGATGAAGAAGATTTTCCAAGGTTGCCTTCTGATAGGAA
GAGAAGGTTGAAGAAGAAGAAGAAGGAGAGAATATGGTATGATCCATCATTACCTGATGC
ACATGAGCAGTTTGCAATGCGTTTGTGCTTCCAAAATGTTGTGGAGTTTAGTGAAGCACT
TAGAAATTTCCATGTAAGGACACTTAGGAATTTTGAGTATCACAGAAATGAACCAGCTAG
GGTTATTGTTTGGTGCTCTGATAGAAAGCAAGGATGTGAGTTTTACATAGTGGCTTCTAA
AATATCTAATGAGGCAACTTTCAGCATCAAGAAGATGAACTTGGATCACACTTGTGGAGC
AAGTGGAGAGAGAACCAAGGTTACAGTCAATTGGGTTGCGAGGGTTTGTGAGGTACAATT
AGAACAAACACTGGAGCTGGTGTTGAGACAATTATGACATACACAAAGAAAACATTTGGG
GTTCATGTGCCTAAAAGCTTGGCATATAGGGCAAGGAGGCAAGCAGTTGAAGTTGTGCAA
GGAGATCACAAACTCCAATATCACAGACTTAGGGACTATCTTCAGTGTGTGCTGGATACT
AACCCAGGCAGCAGATGCATAGTGACAACGCAAGAGGACACAGAAAATCCAGCTCCTACC
CCCAGGTTTCACTACATGTTCTACTGCCTGTTTGAATGCAAGGAGGGCTTCCTAAATGGA
TGTAGGCCATTTATAGGCCTAGATGGTTGCTTCATCAAGCTCAGCACCAGACAACAAATA
TTGGCAGGTACAAGGAGGGATGGGAACAACAACATCTTCCCCATAGCCTTTGGTGTTGTT
AACAAGGAAGAGACAGATAGTTGGACATAGTTTCTCACACAACTGAGAACTGTTATTGGA
ACTGGGAACAAGTTTGGCAAATACAAAATTATGTCTGATGTGCAAAAGAGATTGTTGAAT
GCAATCAATGATGTATTCCCTGACTCTCCACACAGGTTTTGTCTTAGACATATATATGCC
AACTTCCTATCAGCTCGTTTTAGAGGGGAGGAACTCAAGAAGCACTTAGATCAGGCTGTC
AATTCCTTCACTAACCATGGTCATGATAAAGGCATGGAAAATGTAAAGAAAGAAAGTTAT
GAGGCTTGGCGCAGTGGTTGTCTCAGATACCACACCATACATGGGCAAGATACAAAATGG
ATGTTGTTTGCAAAACTGACCTAGTTGTAAACAACCTTAGTGAAGTTTTCAACAGGATGA
TATTGGATGTTAGGAACAAGCCAATGAGGACTATGTTGGAGGGCATAAGAACAAAGTTGA
TGACCAAGTTTCAGAAAATCAGAGAGAAAACACAGACTTGTAGATGGGAGATCACACCAA
CATACTCAAAAATCTTAGAAGAAGGCAAGAAATGGGCTCAGTACTGTGAAGCATATATGG
AAGGTCCAGACATCTGGCAAGTTACTAGTAGTTCTGATAACACATATTGTGTTAACTTGA
ACAACCATTCCTGTGGCTGTAGGACGTGGGACATGACAGTTGTGCCTTGCAGGCATGCCA
TTACTGCAATGCAGAAAGTGAAGCTACATCCTGAAGACTTTGTCAATGATTTCTTCAAAA
AGTCCATGTATTATGAAACGTACAAGCATATAATTTTCCCGGTTACAGGTCCTGACCACT
GGCCTCATACACCTCGAGATGGCATATCTCCAAGAGTGTTTCATGCCATTGTGTAGGAGA
ATAGAACCAATTACTCTGAAGCTAGTTCTTCTATGGCTACAAATGTTCAGAGGCCTTCTT
CTGCACCTGCACCAGCTCAGGTGCCTTCTTCTAGGGCAAATAAAAGGGTTGCTTCAACTT
GCCCAGCAACAGCAGCAGCAGGAGCACTAGCTATGAGGATTAGGTCTAACACTTCTACAA
CAGCACCACCAACAGCAGCAGCACCATCACCAGCTAAAAAGAAAATAACCAACACTTCTT
CTCCTGCTAAGAACACCAGGTCATCTACAACTTCTCCAGCAAAGAACACCAGGTCTGCAA
GTGCCCACAGGGATGCTTCAATGAGAACAACTTTCATTGCACCAAGGCAGTCAACTTTAA
ATGTTGTCTAGGATGGGTCAAAAAGGATCAGGAAGCCAATTGGGAGGCTGAAAGGCTATT
TTTATGCAAGTGGTAACTAGCATGCATGTGTTTGAACTATAGTTGAACTGCTATGGTCTG
TAATAACTATACTATTTTGTGTGGTTTCAGTCGGTTAATGTCAGTGAACTACTATGTGGA
TTCAGACAGTTTATGTATGTTTATTCAATCAGTTTATGTGTGCTTATTCAATAAGATTAT
GTGTGTTTATTCAGTCAGTTTATGTGTGTTTATAACATGTTGATTCAGTCAGTTGGAGAG
TAGTATAAATATAGAATCTCATACTTAGGAACAAAGCATTGGAGATCCATTACAACATAC
TTAAGAACATATCATTGGAGATCCATTACAACATACTTAGGAACATATCAAATATGGTTC
TTACATAAGACACTAAAGTTCAAATGCAGTGCCAAACCCTAGGTTAACTTCACATTCCTC
CAAAATGTACACCCTAATGATCACTTGAGAGTTGAGACAGTTAGGCCACATCCTTATATA
GGCCTTGGATGTACTTCACCACCATTTCACACCACTTCATGACTCAAGGATGGCCTTGAT
TTTCTCTAACTTTTCCTTGCTGTCATGCCCATCTTTCAACAGCTCACCAACAACTTGCTC
AAGCTTTGCCTACTCCTTCTTAAGAAGACCTCTGTCCAGTTCAACATCCTTCATAGCCTT
TTTGGTGTTCTTGATAATGTCAGCTTGGCTTTACAAAATGCACCAATGCTCCTTTGCAAG
TTTAAGCTTTTCCATCTGCACCTCCAACATAGCTTTCGCCTCCACCTCCTCCTCCTTCTT
CTCAAAGTCCTCTTCCATCTGCACTTCAACATCATCCATTTGCTTCTGGTTCATCTTTCT
ATCTACCTTACTATCCTGCCAATCAAACATTTTTTATACATCTTCAACAAGTTTGAAGTA
CTCCATGGAAAGCTTGTCATTTTCAGTCTTGAACTTTGCCAACTCCTTCTCAAACTTCTC
CGTGTCAAGTACCCTTCCACAGTTCTGCTCATGGAACATTTTCCATAGCTTGTCCAAACA
CCTCTGAAGAACAGGAGGCCAAGGCCCATNNNNCCACTCTACAACACCACAATTCACACC
ATTTTCCACCATTTGTAAATAATATTAGTTATTACAATGCCATCATTAACTTCAAATTTT
GTCTCCTACTTATAGCGTCGTAGGTACTGATCTGCTTTTGCTTGGCACTCGGTTGAGTTG
GGATGGAGGGCGATGGAAGGTGAGCTCCTACTTAGAGCATCTCCAGCAGGCGCCCAAAAA
CTGCTCCGCGTGCTAAAAGATCCGTTTTTTGGGCGTCGGACTGCTCCAGCAGAAGCTGCA
AAACACTGCGCGCGCTAAAAACATTTTGGGCGCGCGTTCAAAAACGCTA