Map Locations of contig_66888 (8212 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_66888

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74973 1 1397 bp AK365163 Available Available None
MLOC_74972 4 1922 bp MLOC_74972.2 Available Available LOC_Os09g02130.1, FRAME:+2, EVALUE:9e-100, 13109.m00128 protein expressed protein





CDS Structure of MLOC_74973






CDS Structure of MLOC_74972






Contig Sequence (8212 bp)

>contig_66888 8212 assembly3_WGSMorex_rbca.fasta
TCTTCAACGTCGCGCCACCTCCTCTTCCTCTCCACCCAGGCGACGGCAGGGGCAATAGGG
ACCCCCACCAAGGAGGGGGGACCCGCCGCCGCCGGACCCCCCCCACCCGGGGCGGGCGCC
GCCGCGCGCGGCGCCGCCGGCGCCGGCGCCGACGAGGCCGCCGCCGAGCGCGAGCGCGCC
GCGGCCATGACCCCGGACCAGCGGCTCCGCGCCGCCGACCTGGACGCGCGGGCGTCGTCG
CTGCGGCGCGCGATCCAGGACCTGCGCGCCCGCGTGCCCCCGCCGAACGTCGCGCAGCGG
CTGCCGCACCTGCACGCCCACTCTCTCGCCTCCTCCGCCGCCCTCGCGCTCCAGCTCAAC
GCCCACTCCTCCACCAAGGAGCAGGTAGCTCTTCCTTCTTCAGCGCCCCAGTTTTCCGCG
TCCCCTCTCGCAGATCCAATGTTGCATACATGGATTTTATGTGAATAACCTTCGATTGGA
GAATAGCGCATCCTAGCACGTCCCATTTGACTACGTGATTAACAAGCGCTACCCGTATGT
GAACATCCGTAGCTGTTAATTCCATTACCAATGTGAGAGGACATGCTCGAGCCATACTTG
CTATGATTGCATTTATACTCATTTTCTGTTTCATAGTTTTGGAATCTGTCTGCTGATAAC
AATGATAATTTACTAGGATCATTCCTTTCACCTGCAATAACGATACCGGTAGGCGACATA
CAAATTACAGCTGCTCTTATCACTTTGGACATCTATGGTCAATGTTTTCAACTCACAGCG
GAACCACTGTCATGGTTTTGTACTGTTAAGGCTAAAGAATTCCGCATCTTATATGGTCTG
TAATGTAAATTGATAACCATTGTAGGCACTGCATAGAGAGGTAAAAATTCAAGAAGAAAA
TACCGCCTATGAGAAGGCGATATCTGATTGCCGCCAGAAAATTCAGGAAAAGCAGATGGA
GGCTGCTATGCTCCAGAGTAATCTGAAGGTACATTGTCATATGGTTGTACTCCCTCCGTA
CCACAATACTTGTTGTTGGAGAAAACTAGTCTAGTTCTCCCCAANNNNNNNTATTTAGGA
ACAGAGGGAGTACCTTTTAAGTACTTGTTCTACCCTTATCATATGCCTCTACCTTTGAAG
TACTCACTGTACCCCTATGTCATTTTCTCTCTGTTTTTCTTGTCCCTTCCGTAGTCTCCG
TCATAGGTGATATGGGCCAAGGACCATAATCAAACCAGGCAGCCCGCTCTCTCTTAAGAA
ATATAGATAGTTAGGATTGCTATCTTAGAGATAGGATTCTATAGATTAGGACTGGCAGTT
TAAATTAGGATCCAACATGTGGTTCAAATTAAGAGCTGTCCTATATTTATAAATGACTAC
TGTGTACTCTTTTGATATTAAAGAAGAATACCGGAGTAGTGGGCCTTCAACCTTGCCTCT
CTAGTGTGATTCTTCTCCCTCTCTAATTCTTGACTTTTAACAATATTCCTCTATTGAATC
ATATTTGTTGTGAACCTTGATCCACCACTTTACATGGGTGGGAGTTAATCGTTTATTACT
TGATCTCATTAGATACAATGCATGGCCTTTCTATAGGCCCGACTCTGACTTATCCCTTAA
GGCTTGAACTTACCTTTGGCAATTTAATCTTCTTCAAACTCTATCTCTAGCAATACAATC
TAACTCCAAGTCTTGAGCTTTATCCTTAGCAATCCCATCTAACTCAAACTAATTATTCTT
ATCTCCAACTTCCCGATCAATAATGCTCCAGCAGGACCTTCATGAAGAGGCTCTTCTTGA
ACACATCTTCCCTGTTTCAGCCAAATGTGCAGGAGCTAGCACAACAGATAACACCGTAAT
ATAATATGATATTTGCAGGAAATGGAAACTGCAGAGCTGGATTTAAAGGCAAAGGTTGAC
AATGCTATCATGGACCAAGAAGCTGCTCAAGATAAATCATCAATGTCTGCTTCGGAAGCT
ACTGGAAATGCTCTGATAGAAGCTGAATCGTTGATGAATCTCAAGTCTAAAGACTTGGAA
GAGAAGAAGGGGGAGTTGGTATGACATTTTATAGCATCTTTTGTGGATCAAAAACGCATG
TTCGGTTGTCAATGACTTTTTCACCTTACACAGAAATTATTGGAAGACAAGATAGAAAGA
TTGGAGAAAGTATGGTCCTCGGTTGAAGAAGAATCTTTGAAAAATCCAAGTCCTGGTACT
TTCCCCGTGAATATTAACTAGCTCTATTTTTTTTCATCTTTACTTGCACTAGTATAGGTA
TCATAGATTGTTGAGCTGTTACCTTGCATACTTTATAACCTATCCCTGGTAATGTATGAT
TGTGCAAAACGGCACACAGCCTAAATCAAGTGTTACTTAGGCTAGTGTTTTTTAATGAAG
TGTAAACAACACAACTAAAGCTACATGTGTATTTGTGGAAGCACCTTTTTTTTTAACTAA
GAAGCACCAAATTGTGTGCAACTAAGATAGTTTTGGTATTGCATCATGCAAACATGTACT
TACATGATCGAAGTGTTCAATTTTGATGAGCTGGGTTCCAAATTTCTTTCTGCTGGACTA
GAACTTTTTTAGTTGTGGCATTGTTGTATTTTGTGAGGTGGTCAACCAGCTAACCCGCCT
GCAAGGTCCATGGATCGGAATCCATGATGCTTAAAGGATGGTGGTACCTGTTAGTGTCAG
AGCTCTGTTCAGTGTGGTGATGGTGTGGTGATCCATTTGTGATATAAAATGGCTGGGATT
TTATATCTCTGTTTTAAAATAAACACTTGATAACACCGTTATTTGAATCTAGCCATAAAC
TGAACATACTTTAATTATAACCTAATTCAGTTGTAGATCCTCGTAGGATGTCGAGCCAAA
GACAACTAGTTAACTGATTTTCCTTTCTTCTTAAGAAGTGATGTCCGTTTATACCCACCG
AAAATTTATACGTGCTGTTACATCGTCTTGTACAAATCGGTTGTCCTCTCTCACATGTGC
AGCCCAGAGGGAGAAGGTACTGGAGAAACAATTACATAGCCTCATTGAACAGTTGACAGC
TAAACAAGTGAGCTCAAAGTCTTCAGTCTACCAACTGCAGTATCTTGTTAATTTCTCAAA
CGTACTTCACTCCTAATATCTTAAAACATACTTTTTGGCTTCTACTTTCTAGGCTCAAGC
TGAAAGGCTCATCACTGATATACATGCCAAAGAAAAGGATCTAGAAAGGTTGAACAATAT
ACAGAGAAATCTTCACAGCGGGTCCAGCGAAGCGGGTGCAGCACGGAACCGGTTCAGCGG
AGGACTTCTGAGCGGGGATGAAGATTCTGGCGCCAAAGCTGTCCGTAAACCCGGCCAATC
TGGCGGTTTTAGAACAGAAGGCCAGAAAAGGCTAATGATTCTTAGGTCTGCTTTTGTTCT
CTATATCTTGGTACTGCACGTTGTTGTCTTCATAAAGATATCAGTTTCGAACTAGGTAGC
ATACAAAACACAAGCACTTTACCCTTGTGTAAATAGCACATGTAAAATTGATGGTGGTTG
TATTTCTTGGAGCTGAACTTGCAGCCCCTGTGTTTGTGCCTTGTTTAAACCAGGGCAAGT
GATGAGTGCATCGAGGCGATCCCTGTTGCTGAATATGTTCCCAGGATAAGATTTCATGTT
TACTTGCCCATCAGAAGGTGCAAATTTCATCTGGCATGCACTTGAGGCTGTAAGATTTTG
CTGGGCTGTACGATATGTTTCACACTTACTTTTTTTTCCTAATACTCTGAATGGGCCATA
AAACCTTGAGTATAGTTCCAGATTCCAGTGAATGCCAAGGGAAGCGCATCCCTTTCTTTT
CTGCTTTTGTCAGCATAGTATTTTATCCTCTCCTGAGCTCTCAACAGGTTGTTGTTGATA
GTTTTAAGATGCTAGGCACATGTTTTGTACTTCCTCTGTATCAAAATAATTGTAGTTGGG
GAGAACTAGACTAGTTCTCCCCGACTATAATTATTTAGGAACGGAGGGAGTAGTAATGTG
GGGCTATCGTCATTGATAGAATCGGGTAGGTTAGATTGGCTACCGTAGGAGGTGTGAACC
CATACAGTGCTTGGAAAGTTGTCATCTTCAGAGAAGTACGAAAACTTGTGTTGTACAACA
CTCAACTAATGCCAACCATGAATGCCATTTCTTGGGTTTGTCAAAAGCCATGCACTTCAA
GTAATTTTCCAAGTACCCGTTCGCCCTTTTAGTTTTTCCATCTGTTTAGGATGATACGAA
GCGCTGAAGTGGAGTTTGGCTCCCTAGGATTTGAAGAGTTGTTGCTGTAGAGTTGGTGAA
CATATTTGATGAATCTATCTACCACAACTAGTGTTCTGAAAACCAGTTGATCCCTCAACA
AAGTCCAAACAAAATCAGCTAATGGCAGGGGTTGTAGTAAACCTGGGTAAGGTGTATGTT
CAGACTTGTTGAGCTGGTAAACAGAGCATGCTTTGACAAAAAAAGGTCACATCTTGAGGC
CTCCCCAGTGGAACAAGAGTTTCAATTTCTCATCAGTAGCTCTCTCCCAAGAGTGACCTC
CCCTGTTCAAATTTATGAAAGGAAGTGATGAGATCATGTCCAAATGATGTGTTACTGGCT
ACGACCATTTTCTTTTGTATCTGAAAATGCCATGTTTGAAAGTATATTTTGGACGTGAGA
ATGCCATGTTTAGCTCATTGCGCTTTGCATCAGTGCCATAAGATTTGACTACTTCAGTTA
TACAGAGGTATGCAGTGCTATATGTCAAGGAATGAAATGTGATGTTTAACTCTTGATAAT
GCATATGCATTGTTGTTTTCTCTGCCTCTTTCGCGTTCCATTGTATATTGATGTCTCAAT
AGTTTTTTTTTTTTTTTGAGCGGGGAAATTGATGTCTCAATAGTTTAACTAACAGTTTTT
GTGGTGCCCACCAAAGGGAAGTTGGAAAAAGGTTATCAATATTGTCGTGGTATATCAAGA
AGCCGGAACTAGTTGCGCGGCACCCATTTGTGCATGAAACATAGGCACCCTTTTTGGGAA
TCAACGAAGCAAAATGTACAATGTTTCTGCTGTATTCCCATGGTTGCTTCTTCTACAAAA
ATAAAACGCCAAGGGCTTGGCTGGTCTCGTTTAAATGTACAAATTTTCAGATACACCTTA
CAGTCCTACCTGTCGTGCATTTGCAAAATTTAGAAGGATGTTGCCACAAAGGTCCGCCTA
TTTCTGTGAAGAAATATTGGTGATGCAGTGGTCTAAATTCCAAATGAAAAAAAAAAAGTT
TAGAGCTGCATAAAACTGAAATGCAAATGCTCACAATTGAAGTTCCTGGGTCTAAAACGA
TAAAAAAAGGGTACATAGTAACATGTAAAGCTACGTAGATAATTCATCTGTACACCAGAC
CACTCCATTCTTATTATCAGCTCAAACACAGTACTATGTGAACTGGGTTGTTTTCTCTTA
CAAAATACGAGGCGGAAACAAGATCCATCCCAAAATTCAAAGCAAGGACTACGCCTACAA
AAACCAGAATCGGAGATGTTTTCACCCTAAAAATGTAGTTCTCGCTGCAGGATTTTGCTT
TCGTTTGATGCTCCAGTCATCAAGGACCACTTGATGCGCCCAAAAAAGCCTCAACAGCTG
CCCTTCAGCTTCTCCCCCAGGATTTTGTTCAACAAAACAGGGCTTGCTTTACCCTTTGAT
GCTTTCATCACCTGGAACCAATTTAAAAAATATGGTAAACTCTCGTGAGTGCGGAAACAT
ATACGAAGGCTACCCAAGGGGAAACATATACAAAGGTTACCCAAGGGGAACACGGTGACA
GATTCAAAAATAACTAACCTGACCAGCAAAATACCCCTGCAACTTGGTTTTCCCAGCCCG
ATACTGCTCAAGTTGCTTCGGATTGTCAGCGAGTACTTGATCTACCATGGCCTCAATTGC
TGCTGGATCTGCGATCTGCCATTTTCCAGTAGTAAATGTTAGTTGGATAACCCAAGCACA
GACTAAAAGCACTAACATAGCATCAGCTTATCTCATCACAACATATCAGACAGTGTAAAA
ACTGATGAAATCAAAAGGACACCTCATTTTTTTGCCCAATTTTCAGCTTTCAATTTCGTT
AACAAGGTACTTGTTTGGTTGTTCCTCGATGGAAGTTACAAGCCAAAAGTTGGGAACACA
CTTGAAACAGGTGGCAGGGCCGCAGCATTTTATATATTTTAAACATTCAAACTACCATGT
TTCTCAATAGTAACCAATGTGACCACATTTACCTGAACCAAATCCTTCTCCTCTATCACA
GACTTAACAGTCCCGCCTTTGGCAATGAGGTCAACCACAATCTGCAAGAGCAGAATCAGG
AAGAAGGTATTACAATTTTAGAATGCTATGACTAATGGCAAAGCCTGTGAAGAATGCATA
TTCATACCAGAACATGAGGCATGCAAAATATTTCAGAATAACTGAAGTACTAAAGTTCAT
TCTTGTGCAACCTGCAAACGCTTTTGGTACTAGGCAGCAGGGGAAAGACCAGAATTTCCT
ATCTGAAAACTTATCTCTACCATAGTAATCCTAGTGTCCTACTACGGAAACCTTCAGCCA
TTTCCTTATGTAGAGCATATTTTGATTGATCAAGAGAAGGCTTTGGCCAACAAATACTTC
ATTAGCATGTAATTTATATAAAATAAAATTGATATCGTTAGATTTGTATTTGGTAGTACT
TACTGTTAGGATTTTGTACCACATAAACAACATACTAACAGAGTTTTTTTTTAATCAAAC
CTTGTCTTAATCAATCAAAATAAACCCTACAAAAAGAAACAAGAGGGAGTACAAAGAAAC
CGTCAAGTATCAAGTTCTGTCCGCCAGAATCAGTGCAGCAGCAGCGTAGCACAACTAAAA
TGAAGAGACTGCATATAACATGCTTTAACTAGCGTAGATAAAAAACGAATTTAGTTAAGC
AATGTTACCTCCTTGGCAATTTTCCCACTGATAGTTCCATTCTTTATGTATGCAATCATT
TCAGAAAGCTCCAGAGGTGTTAATTTACTTTCATCAATAGAAAGCTTTTCATCCTTCAGA
TAAGCAGTAATATCACCCATTATCCAGTTGGCAGCTAGCTTTGCATCAGCGCCATGCTCA
AGTGTAGAATCAAAGAAATGAGCAACCTGGGACGAACATACACAAATCAGATCACCAAAG
CTGCAGTAAATAATAAAGAAATGGGTTGTCAGGTAGGGAGAGAAGAAACTGGAGTAACTT
TTCAATGTATAACACAAGACATTTGGTAATCATGTGATCCAACAAAATATAAGAACCTCA
AGCAAGACTGATTGAATTAAATAGGAGCTTACAAATATACTTGTGCAAAACATGCACATC
CATGACAAGGGTAAATGGAAGTACTGAAAATGATTACCTTATCGTCATTAGCAAGGAAAA
TAACATCTTGCATGCTGAGTCCCATGTTCTCATAGCGCCTACGCTTTGCCTCTGGAAGCT
CAGGCATCAAATTACGAATTTCATCAATGTACTCACTAGTAAGAACGACTTCAGGAAGAT
CAGGCTCAGGAAAATATCTATAGTCAGCAAGTCCCTCCTTTTTTCGCATTGTAAAAGTTC
TCTGAGAATGTAGATAAAGAAACGGACTTAGAAACTATAGGAAAAGCACAAGCTAACGAC
CAACATTAAATAACAACCTGAGAGGACTCATCCCAAAGACGGGTTTCTTGTACAATTTGA
TCAGCCTTGTTTTCTTTGTGAAGAATAATCTGTCGGGAGATCTCATAGTCTATCGCCCTA
CTTATTGCGGAAAATGAGTTCATATTCTTTATTTCAACCTGCCAGAAATTAGAGTGAAAG
AAGCATGTCATGCCACAACCATATGCAGTAACAGTGAACAAACAATGAGGAATTCATTGC
CATCTTACAATAATGATACATCAACAACTAATGATCTAAGGAACTGCTTGCTCTCGGAAA
ATGGTTCCCTTGTAATGTCCATTGTTGCTAATATTCCATGGTCAGTGCCAACGGTCATAA
CACTGCTAAGTCCATGACTCTGGTAACTTTCTTAAGAGATGATGGCACAATTTTTTTTCG
AGAAAACGCAGAGATGTGCGTTTCTTTGTATTGAAAAGAGGGAAAGTCAGTCTCAGAGGA
GACGATTACAGCAGGTTACAAGCAGTTTCAATGAACATCCCAGGATGGGGGC