Contig Data
morexGenes
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Map Locations of contig_66871 (4938 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_66871

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74964 1 690 bp MLOC_74964.1 Available Available LOC_Os08g09240.2, FRAME:+1, EVALUE:4e-74, 13108.m00971 protein autophagy-related protein, putative, expressed





CDS Structure of MLOC_74964






Contig Sequence (4938 bp)

>contig_66871 4938 assembly3_WGSMorex_rbca.fasta
TTTAGTAATTCATCATGGCACGTTTACTTTCTTAATTCCCTTTTTTATAACATGTTAGAA
TTTACTAGCAAAAGTGCACGTGCGTTGCTACGGTTAATAGTGCAACAAAATACAAATTTT
TGACAAATTGAATTCAACAGGCCGAATTCAATTGACATGGACATTGAGTAAATTGAAAAT
AATAGGACATGACAAAGCTCTTGAAGATTGCGGACCTAACGAAAACATGATCTAGACACG
TTAAAAGATGCAGGTAGGATAGATAATTACTAAATCATATCAAATCACATAAATATTTGG
TTTCCACCATTATTTATAAAGATAAAAAAATATCTACAAATTATATTGTGCATAATACGG
GTTAAAAATAGTGAAATTAAAGAATTGTAAACAAACATGAATAATGAATTACCTCATTTA
ACCAAACAGCTCCTAGGTCGTTAATTCAGTGCAGCAACAGTACTTATTAAAGAATTTGTG
CACTCAGGTGAAGCTTTGTTTTGTATTTTCGTCTGTTCTCTAGCTTACTGTGTATATTCA
ACAAAAGGAGGTCTAATTTTCCTGCTAAGCTCCTCCCTGTTGTTGTTGCTTGTCGCTGCT
AGCTCAACTGTGCTACTCTGTTCCTGCATAGTTTTTAGAAGGAACCAATCGGTAATCAAC
CAACTGAAAGTTGTCAAAGCAGGGAAGTGACCAAAGCAAATGGCGGCAGAGAGGTCCCCT
GAACTCGGAGTTCTTTGGAGATGAATATGGAGAGGAATCATCCCTGGAGCGACAGAAGAT
ACGGCTTGGGCTGGGCCTTGGCTTGATGTCGGGTCGGCTGGGGCGGCGAGTGCTGCGAGC
GAGCGGGACGAGCGTCGTTCTCGTACAGACTCGGACAAGGACAGGCGGCGACGGCGCTGC
AGATCGAGCGGGGCGGCCCTATGGTGGCGACGACGGCAGGGCCCGGTCAGATCTGGCCAG
GGTGGATCCATTTCCGATGGATTTGGCGTGGACGCGGTCAGATCCGACGAGATTGAGGGC
CGGCGGTGTCATGGCCCTCGTGGAGGTCTCTGTTCAGCGAGAAAGAGGGAGAGATGCGAG
AAGATTGAGAGGAAGGAGGAGAAGGGAGAGAGGCGAGGCGGCAGAGCGACCGGAGGTCCG
ACGGGGCGTGGCGGCGGTGTGGGGTCACCGGCGAGGCGGCTTGCGGGCGCGAGGGGAGCT
CGGGCAGGATGAGCTGCGGGCGGCGATGCAGTTTTTTTTATGAAAGTGAAACATTTTATC
TGAATTCACTAAAGTAAGGGGTTGCGGATTGATTTCAACAAAACACACGGGCTTTTTTTG
CAAAAACAGCGGCGACGGGTTTTCCGACAAAAGCAATAGCCGCTTTAGTATTAAATTAAA
AAAATTAGGTAAAGACTTAAAAAATAGAAGAAAAAGTAGTTGAAATATATTGTTGCAATT
TTAGTGTAATCATGATGGCAATTCATATGCATGCAGTGACATGACACAGTATGTGGTCAT
GAGACATCTGGTTGGGTGTTGCTTCCACCACATGTGTGGTGATTATCACGTCTTGATTTA
TTGCCATATATATTACATACAATCTTTCTATATTTTACGTATTTATTACATAAATATGGA
ATCTTAGTTAAACGCATAGACTTTTTAGCCATAATATGGTAGGTGGTTAGCCGTGTGTAA
ACTTATTTTGTTATTTTTGTCTAAGTCTGAGAATAGAAACACCTTTATTTCTTGTATTTC
TCGTTCATCCACGATCTCTTGTCAAATTTTATATGATTACTCATGTAATGTTGTGGCTTA
TCATGTTTGAAAAAGTATATTAGATTACTTATTTTATTTAGCTTGAGATCATTACAAACA
AAGCACGAGTCACATTCTACGGCTTGACCATGGGAGCCACATTAGCTTAAGCACGAGTCA
CATTCTACAGCTTGACCATGGGAGCCACATTAGCTTGACCATGCTTTGCTTAGATTGAGC
TCGCCCCAATTTCGCAGCCGTCGGCTCACCGGTTGCAGCTTCTGCGGTTCTGAACCGCCG
GCTCACCGGTTGCAGCTTCTGCGGCCGTAGGCCCCGATTACAGCTTTCCGGTCACGCAGC
TTTCTGAACCGCCGGTCACGGCTGTCGCGGTTAGTTCAGTCAGATTGATCCAACGCACAG
CACGGAGCGGCGGTTGGAATCCTTCGCAAAATTTCCAGATCAATAGTGCTACATCAGCAT
AAATTCACTGCGGCATCCTGACTCGCGCTGCCATGCAACACCGCCAGTCTATGTTCTGAG
ATCGGCAGCAACAGAACCTAAACAGAGCAGAAGTAATGGCACCGGCAACAAATGGCCCTG
GCGACCATACCCTGTCGGCATAGCCAAACCAATAACGCAGCAACAGCACCCAGATTTACC
AGAAATCTCACATCAATAGCAGCGAACAACCAGTGACCACAGCGGCATGCATGAAGGAGC
AAGTAGAAATTACCGAATTTCATAGTCGATTACTTGATATATATAAGTCAGAACATTCAA
ATAGGACAAGTCAGGATACTAGGTTTTTCTTGGTTGCACAATTTAAAGATCCTACGACGA
GGCAAACCAGAATATATACACAGTTGATTGGCACGCCTTATTTACAGGAGACATTCAGAG
TGATTGTCATCGTGGCGGCACCACCTAGAGCGATTCGAGCGATCCAAAGGTGTTCTCCCC
GCTGTAGGTCATGTAGAGGAAGCCGTCCTCGTCCTTGTTCTCCTCGTAAATCGCAGACAT
CAGGGCAGCTGCAAACAAAGGACGGATATGAATTTTGATTTAGAACATCAGACCGTGCAG
TAAAATAAAGAGGTAGACGTAAGTTGATCAAAGAAAGTCTGTTGCTGCATCAGTTGTTTT
CCCTACCTGTTGGTGGAAGAGTGTTCTTGACAAAGATGAAGATCGCTTTCTCAGCGCTGA
GCTTGATACGCTTACGAACCACGTACACAAACTGTCCAACTGTAAGATCAGCTGGGACAA
GGTACCTGTATGGAGGTGATGGGTATCAGAATATAGAACAGCTGAAGGTCAACAATGGTC
GGCACGCGCTTTGATGTGACATGCGACAAAGTTTTGATGAATAAGATCAACTGTTTTTTG
GACCATAGAGATGTCGATTCCAATAGTACATGTTTAAGTAAAAAGCCTTTGCAAGTGGTG
TGCTACTGACAAGTACAAGCCCAATTTCCAGTGATGAAAGTAACCCACGGGACACACGCA
ATACTAATAAGTCGGAAATTAATTGCACCAACTTCCAGAAGTTATATCACAAGGAACCCG
TGAGAAACCACTTGCTATTTAAAGAACACACGGAGTAACACTGCACAGTAATAATGATTC
AGACATATTAACAGCCTAGTATAACCTTAACAACAACCCTACTAAGTAAAGGTGGAGATA
CTCTAATCTACAGAAAGTTTAAATAGTATGAAATGTTTAAGCAGAACTAACTTTTTCTTG
TCAATGTCAGGAATATCACTCTTCCCAGCCTTCTCAACGATCACCTACATTACATAGATT
GTTTACCGATTAGATCAAACAAATCATGGGTAAGGAAACAGTCTATGCTGAACAATAACA
AAGGATAAGCTTACAGGAATTCTGTCAGAGTACTTCTCTCTTATGCGGTTAGCCTCCGCC
TGCCTCCTCTCTGCAATGAAGTAAAAAGGAGAATACATCCTCAGAATAAGTTGAAGATAA
AAGGTTGCAACAGATAGAACAAGAGGAAACACTATGGCATAGAATCAATAACGTTCAAAT
AGAACTGTAAGTAACGGATCATCACAAGTGATGGAAATCGCTAAAAGGCTAAAGTTAAGG
CATACGATTAGAGTAGCATACATGTCAATAGCTAATGATTCAGTAACAAATGGTAAAAGT
CCACATTTAGAGAGAACTCGTAGAAGTACTTCCTCTCAATTTCATTACAGGACTCTTTCA
CAAAGGTCCAGCGAGAAGCAGGTTATCCCAACCAGTGCTCAATGATAGAACTGTAAGTTC
ATATTGCTACACAATGCAACGGAAGGGCCAACGACATTGGTATACAAAACTACAAACTAC
GCCAAAGAATCAATTTACAGTTTATAACTGAACCATCATTAGCGACAAGTTTTCACTATT
AACCACCATCAACCCCCAGGTTTATTTAGAGGATGCACCATGATGATCAGAATCATGATT
AAGATTACTTATCCAACAATCAGAGACCTGTATTGTGACCATCAACTCAAACTAGTCACA
CGGCTTCAAAAACGATCACAAGCTCATCACAATTTACCCATTAATCCATCACTCGCCCTC
CCTAAAAAGGCAGCTACCTTAAGTACATCTTATGTGTTCTAATCTAAAGCTCGGTTTCAG
CTCCCCTCGAAGCAAATTAGCACACTATTAAGCAGATAACGCTCATCTACCGAATTCATA
TGAACCCTTGCAGTTATTCCAATAATTTCCATGGTCAACCACCCAACCCACACAATATCT
CACAATCTACCCAAAAAAAACGAATAATACAGCAGATAGCGCAGCTTCCATAAGACGAAC
ACCCCTAATACGACGAACATCCATACAAAAAAAAAGAGGGGAGCACGAGAAGACGAGACG
AACCGAGCGGGTGCTCCAGCTTGAACGAGCTCTTGGCCATCGATCTACCTTGGGTTCCTG
CAAGCACAGAGCTACCAAATCAACGACAGAGCCCAACCACGAGAAACGCACCGATCAATC
GACCGATCCAACCGAATCGAGACGGATGAGAACCCGAAAAAATCCCCACGATGATTCGGG
TCGGAACACCGAATCGACCGGGACAAACCCCTGATCCGACGAAGGCCGACGCGGAATCGA
TCGAGAACCAGGGCGGATGCCTACCTTGGTCGCGGGATTCGGCGGATTGGACGAGGGTTT
GCGACGCGGATGAGGAGG