Map Locations of contig_6673 (7619 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_6673

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74893 2 4773 bp MLOC_74893.1 Available Available LOC_Os02g01170.1, FRAME:+3, EVALUE:0.0, 13102.m00028 protein HECT-domain domain containing protein, expressed





CDS Structure of MLOC_74893






Contig Sequence (7619 bp)

>contig_6673 7619 assembly3_WGSMorex_rbca.fasta
GTCCCCGTCCTCCCGCCGCCGGGCGCGCGCCGCGGCCGCCGCCGCGGAGAAAGGCAAGGA
CCCGGACCCCTCCTCCACCTCCAACCCCGCCCCGCCCCACCACCACCACCACGAGGACGA
GGACGACGAGGGCGACGACGACGGGTCCGCAGCGCCCTTCCCGCCCTCCTTCACCTCAGC
CAGCACCGCGCTCCAGGGCCTCCTCCGCAGGATCGGCGCAGGGCTCGACGACCTGCTCCC
GGGCTCCGCCGCCGCCGCCGCCGCCTCCTCCACCGCCTCCGCGCAGCTCAAGCGGATCCT
CGCCGGCCTGCAGGCCGAGGGCGACGAGTCGCGCCAGCTCGTCTCCCTCAACCAGCTCTG
CGAGATGCTCTGCATCGGCACCGAGGACTCCCTCGCCGCCTTCCCCGTCGACGCCTTCGT
GCCGCTCCTCGTCGGCCTGCTCCGCGAGGACGACGGCCCCGGCGCCAGCCCCAACGTCAT
GCTGCTCGCCGCCCGCGCCCTCGCCAACCTCGTCGACGTGCTGCCCTCTGCCTGCTCCTC
TGTCGTGCACTATGGTGCTATACCGTGCTTCTGCGCCCGGCTCCTCACCATTGAGTACAT
GGACCTCGCCGAGCAGGTGACTTGACTCATTAACCCACCTAGAGATTAATCGACCCATCT
AATCTAGCTAAAGTTGCACCTGGTTTTTCTTTTCTTTGCGCGAAATGAATATGCTGTTGC
TTAGAATTTTGCATGTGTTCGCGCCATATTTGGACCGCGGCGAGACGATTAGCGTGTATG
GCTGGATATTATGTCATCATCGATCCTGGATGCATCCACTTCTACTTATTTTGTTATCTC
GGTAGATTCGCAAGGGAGACAAACATGTCGTCTTGCTCCCCTCGCCCATTCCCTCGCCGA
GATACTGACAAATTTCGGTATCTGTTTTTGTGTTGATGCTCCTAGTCTCTGCAAGCTCTG
AGGAAGATTTCGCTGGAGCATCCGACCGCCTGTTTGAGAGCTGGTGCACTAATGGCCGTC
CTGTCGTATCTGGACTTCTTCTCTACTGGTGTTCAGGTATTTATTCGAATTCAACTCCAT
GGTTTCTTCATCAGAATGTATAGTTCATTTTGTCGTATTCACAGAGCATACACCTTGGTT
CCATTCTACTTCAGTTTCGTTTCCCCTGTTTTTCCTGTGTGCACTGTTTGCTTCTACTTA
CCATATATGTTTCCTTGGTGGCCATGCATTCTTCTAGAGAGTTGCATTGTCTACTGCTGC
TAATATTTGCAGGAAGCTGCCATCCGATGCATCCGAGTTCGTCATGGAAGCGGTACCGTT
GCTCACTAATCTCCTACACCATCATGACTCTAAGGTACGTGCCTTCGAAGTCCAAGCTTC
TGACCCTTGATCTCTCATCTCTTATTACGATATACGAATCCTGCCAGGGCACATACAATG
GTTTCAACCTTTTATTTGTGCACATTGATTACAGGTGCTAGAGCATGCTTCTGTTTGTTT
GACACGCATCGCAGAGGCCTTTGCTCACCAACCTGAGAAGTTGGATGAACTGTGCAATCA
TGGGTTGGTTGCGCAAGCCGCTAACTTGGTATCCATCAGCAACTCCCCAGGCCAGACATC
GCTGAGCACATCGACATATACGGTATACACAAAGAAATGTGTTTTGCTATCCTTCTGTAT
TGTTTACTTTGGCCTTTTTCTTTCCTGTTGTCTTTGTCTTGCTAAGTGTGGATTGCTCAT
CCTTTCAGGGTTTAATCCGTCTTCTCTCAACATGTGCGAGTGGATCGCTGTTGGCAACCA
AAACACTTCTTCTTCTTGGCATTAGTGGCACCATTAAAGAAATTCTTTCAGGGTCCGGTT
TGGTTGCCGGAACATCAGTCGCCCCGGCTTTGTCAAGGCCTGCTGATCAGGTAGTTACAT
CTATCACTGGCTTTACTCTTCTGTGGGTGTTAGCTTTATGACTAGTTTTTACCATCTTTG
ATGGGACCCAATTCGTATGCATTACTCTATTGAAATTTGAGTAGCAGATGATGTACTAGC
ATTGCCTCTTTTCACATCCTCTCCACAGCTTACAAACTTGTTGAAAATGGAAAGGTTCCG
TAACATTTGTGTAATTATACATGCCAGATAAATGCGTAATTTTCTTCAGTGCTGAAGAGA
GTTATGTAGGATGTAGCAAACTAGTCCACAGTTGTCTTGAGGATGAACGTGCAGACTACC
ATCCAAAAGAAAGCTACAGAGCCAAGTAAAAATGCCATGTCTTAGGAGCATGGATTGCCA
AACCAATTTAGTTATCATCCTTGATTTAGGCATCTTGCATCAAAACCTTTAAGATGTTCT
AAGGAGGCACGAATAGGGAACAGAAATGCACAAGTAAATCATGTCTTGCAACAACCATAT
TTGATAGAGTTTCAAAAGAATCTGACATTTGTTGGATATAGACGTGTAATATTGTCTGGA
GCTACTTCTCTTGCTTAGCTGCTCAAGCATTGATTAAAACAATAAACTCGCAAGTTTTTT
TATCCGGAGTGGGACGGTGATATATGCTTGCATGCTTTTCTTGCACGTATGGTGTTCATA
TATTTACTCGTAACCCTGCAGATGTTTGAGATCGTGAGCCTTGCCGATGATTTGCTCCCA
CATTTGCCTGTGGGGATAATTTCTTTACCAACAAACTGTCGTGTATTTATTAAAGGCTCT
TCAACAAGGAGACCTGCTCCCACCAGACAAGATGGGGCTGGTTCAACAGAAAATGAGAGG
TCAGGCCATGAGAGTCTATTACAAGAGCACCCCGAACTTCTACAGCAGTTCGGTATGGAC
TTATTGCCCGTAATGACACAGGTCTGCTCTCTTTCTTATTTCTTGTTGACGAATTTTAAT
CACAAACTTTTGGACTTATTTTGGGTTCTCATACTTAATAACCTCTCCTGCCGGACAGGT
GTATGGTTCAAGTGTAAATGCACCAACACGTCATAAGTGTTTATCTATCATTGGGAAATT
AATGTGCTATAGCTCTGCTGAAATGATCCAGACTCTCCTTAGCACGACAAACATATCCAG
GTACCAATACAAGTTTCTACTATGATGTGTGATTCGTTTCTTCCAGAGAATGGTTTCAGT
CATTGGAGGCTGCATGCACTGCTTCAGTAGACAATGCTTTTTCTCTGATCCTTGCTGAGT
TATACAAATGTCCCTTGCAGCTTCCTAGCAGGCATTCTTGCTTGGAAAGATCCGCAAGTG
CTGATTCCTGCTCTTCAGATAGCAGAAATTATGATGGAGAAACTTCCCGAGACATTTTCC
AAGTTATTTGTGAGGGAAGGTGTTGTTCATGCTGTGGAAGCACTTATATGTCCGGAATCC
TCCAATATGGTGCCTCCTCAGGTACCACCACAGGATAAGGATGGTGATTCTGTTATGTCC
TCACGCCCTAGACGACAACGTCGTCGTGGGGGTGCTGCACCTACAGAAAACAGTTTGTTA
GATGTATCAAACGTTTCCAATTCTGGCATTGCCAGCGCGCCACCATGCTCTACGGAAGTT
CCAGTCACCAGTCTCCGTTTTGAAGTTAGCGACCGTGCGAAGTCGTTCAAAGATAAATAC
TTCCCTTCAGACCATGGTTCAAGCGATACTGGAGTGACTGATGACCTTCTTACACTGAGA
GCACTCTGTGCAAAGTTGAATACTGCAACTGACAATGTCGTAACAAAAGCCAAAGGGAAG
TCAAAAGCCTTGAGTGCTAGCCATTTTGACATCTCACATGATGTGGAGGAACAGTTAGAC
CTGATAGTAAATGAAATGCTTGCTGAGCTAAGCAAAGCTAATGGTGTTTCCACATTTGAA
TTCATCAGGAGTGGAGTTATCACATCATTTCTTGACTATTTGTCATGTGGGACATTTGGT
AAGGAAAAGGTATCCGAAGCAAACCTGCCGAAGCTTCGCCAGCAGGCGCTTAGGCGATAC
AAGTCCTTCATATCTGTTGCCCTTTCTGTTGACCATGAAAGGGATGAAACTCCAATGACT
CTCTTGGTCCAAAAACTGCAAAGTGCATTATGTTCATTGGAACGTTTCCCTGTTATGCTC
AGCCAGTCAAACAGAATTGGTACTGGAGGCTCCCGTCTGACCTCAGGTCTTGGTGCTCTA
GCTCAACCCTTCAAGTTGCGTCTGTGTCGAGCTCAAGGCGAAAAATCACTTCGGGATTAT
TCATCAAATATTGTACTTATCGATCCCTTTGCGAGTCTAGCAGCTGTCGAAGATTTTCTT
TGGCCCAGAGTTCAGCGTGGTGAGGCTGCTTCCAAACCTCAAGCCGCTTCTGCAAATAAT
TCTGAATCAGGTACACCTGGTGCCGCTGTTGGTGCATCATCAACACCTGCATCAGGCGGG
CGTCCGACAACAAGATCAAAGTCATCTGCTGCAAGTGCTGGTACATCAAATAAGGAGTCT
CTAGAGGAAAGCACTTGTAGTGCAAAGGCAAAAGGCAAAGCTGTTGTAAAACCAAGCTCA
GCTGAACCGAAAGGACCGAACACAAGGAATGCTACCCGCAGAAAATCGGCCTCAGAGAAA
GATTTGGACATGAAGCAAACACATGGTGACAGTAGTTCCGAGGTATGTTTTTTTTTTTTT
TTTTTGCACTCTACATGAATAAGAGAACTCCAAAAAAGGATGTGATTGTTATTTCAGTAT
AGCTTCTTATAAGACTAGTGCAAATTGTAGAATCTTACCTATCAGGATAAGTAAAAACGT
AGATTATATGAATCAAAATCGTAGAATCAAAAGGGTTAGTTTGTACCGTAAAGTCGTAGA
ATCATGTTTGAAAAAGAGGGCTTCTGACAACCTTTTGGTTATATCTCACACAAGCTGTAT
ATATTTACCAATAACGTAGATCATCTTTGAAAAAGAGGGCTTCATGTTTCAAGACATATT
TGTATAAGTACCAAGGCAATTGGCAAATACCCTAGGCTAGCACCAGATATCAACATGCAT
CTTCTTTGGGCATTGTGCCATGCCCATTTTTGTTATTCGTAGCTTCTTGCAAAGAAAGAG
ATAAAGCTCCCCACCCTTTTATATATAACTCGTGGTTGTTTGTTGGCTCTTTCTTGTTGA
TTCTCTCTTTTAGTAATGGTGCCATGCACCGAGGCCATCTTGTGCTGTATAGTTTGCCAT
AATGTTCAAGGGTGATTAAGCCATATAGTCAACCAAGCTCACAATTTAAAATCTGTTGAA
GTTATTTTTACTTGAACTGGAACTTTACCAAGCAACACCTCTTTATCTGTTATGTGGTTG
TGTGCAGGATGAGGAGCTGGACACATCTCATATTGAGCTTGATGATGCTTTAATGATTGA
CGATGATGACATTTCAGAGGATGAAGATGATGATCATGAGGTGATAGTTTTTATGATTTA
ATCCTTTTCATTTTTCTCGTAAACCTTGTATGTATTTGTATCTGGAGTATTAATGTGTTC
ATGAGATAGTTTCGACTTTAGACAGTCAGCCTGGCCTATTTTATACTCATGCTTAGGTGT
AGTTGGGGGTACACAAGCATCTATATTTTCCCTGTTTAACCTAAGTGATGCATCCACAGA
GAATACAAAGGCATTGGGGTGACTCATATAGTAAATTAGTTTATTTTGATTATAAGCTGT
AAGGTGCTAGACTCAGGCATGCTTTAAGATTAGCATACAGGCATGTGGGAAATAAAGTTC
TTATTTGAACAGCCTGAAGATCTTTTACTTCTTTCCGCATTAAAATAATAACGATGTTGA
GATTCTCAGGTTCTCCAAGAGGGATCTCTTCCTATTTGTGTTCAAGATGGGGTGCATGAT
GTGAAATTGGGCGACGCTGATGACTCCAATGTTGGTTCAGCAAGTGATAACCAGGCGCAG
CCATCATCTGGTTCTGGTTCCAGTGCTAGAAACATTATGGGCAGGGGAGTAAATGCTGCT
GAATTTCGAAGTGCAGGTGCCTTTGGATCGCAAGGTGCAATGTCGTTTGTTGCTGCGACA
ATGGCTGGGCTGACTTCTGGTGGTGGCCGCGGTGTTAGAGGTGGTCGTGATCGGCGTGGC
CTGTCACTTGGAGGTAGCATGAGTGAGCACAACAAGCTGATATTCATGGCTGGTGGGAAG
CAGCTTAGCAAAAATTTGACCGTATATCAAGCAATCCAGCGTCAACAGATGCTCGATGAG
GATGATGAAGAAAGGTTCAACGGGTCTGACTTGCCAAACGATGGAAACCGCTTCTGGGGT
GACGTGTTCACGATAACTTACCAGAAGGCTGATAGCCAGGCTGAGAAGGGGTCCCAAGGT
AGTTCTGCCTCATTGCATCAAAAATCAGAATCTTGCAGATCTGTTTCTGAAGCACACACG
GTTTCTCTTCTTGATAGCATCTTACAAGGGGAACTTCCATGTGATCTGGAGAAAACAAAC
TCAACATACAACATTTTAGCGCTGTTACGCGTACTAGAGGGGCTGAATCAGCTATCCCCT
CGTTTAAGAGCACAGACAGCATCTGACGATTTTGCTGAGGGGAAAATCGCTACGTTGGAT
GAGCTATATGAAGCTGGAACCAAGGTGCCTTCTGAAGAGTTCGTCAACAGTAAGTTGACA
CCAAAGCTTACTCGGCAAATGCAGGATGTTCTTGCACTCTGTAGCGGCAGTTTACCTTCT
TGGTGTAATCAGATCACTAAAGCCTGCCCCTTTCTGTTCCCCTTCGAAACAAGGAGGCAG
TACTTCCACTCCACAGCTTTTGGGCTGTCCCGAGCGTTGAATCGGCTTCAGCAGCAGCAG
GGTGATAATCCCAATACAGGTAGTGAAAGAGAGGTCCGATTTGGCAGGTTACAGCGTCAG
AAAGTTCGTGTTTCCCGTAACCGCATTCTGGATTCTGCCGCCAAAGTAATGGAGATGTTC
TCTAGTCAGAGAGCTGTTCTTGAGGTGGAATACTTTGGTGAGGTTGGGACAGGGCTGGGT
CCTACTTTGGAGTTCTATACTCTCCTGGGCCATGAACTGCAAAGTGCCCGGCTGGGATTA
TGGAGATCTAGTTCGCCTTACGATTATTCAGAAATGGAAATCGATAAGAATGGTGTGATC
CATGCGGATTCTGACGATGATTTGCCAGCTCCTCAAGAACTCAACTCATCCGAAGATGCC
CGGAATCTGATACAAGCTCCTCTTGGATTATTTCCTCGCCCTTGGCCTTCTAATGTTGAT
ACCTCAGAGGGTAGCAGATTCCTCAAAGTCGTCGAATATTTTCGCTTGGTCGGTCGAGTT
GTGGCGAAAGTCTTGCAGGATGGACGGCTTTTAGATTTGCCTTTGTCAACAGCATTTTAT
AAGCTAATACTCGGGCAGGTAAGCACAGACCCTCTTATTCGTGAAAACAGTATTTACTTG
ACTGTATGTCCTTCCAGTTTCAGCATTTACTAATGTAAAATGCTTTATTTTTGCTAGGAG
CTTGATTTATTCGACATTATCTCCTTCGATGCTGAGCTTGGAAAGACACTGCAAGAATTG
CAAGTTCTTGTTGAGCGTAAGAGGTTCTTTGAGTCCAGCTGTGGCAAGGATCAGCTAAAA
GTTGCAGACTTGCGATTCCGTGGAGCTCCTATCGAGGACTTGTGTTTAGATTTTACTCT