Contig Data
morexGenes
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Map Locations of contig_66724 (4432 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_66724

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74892 1 531 bp MLOC_74892.1 Available Available LOC_Os12g19350.1, FRAME:-2, EVALUE:2e-22, 13112.m02056 protein expressed protein
MLOC_74891 2 4144 bp None Available Available LOC_Os10g37620.1, FRAME:+2, EVALUE:1e-65, 13110.m03415 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_74892






CDS Structure of MLOC_74891






Contig Sequence (4432 bp)

>contig_66724 4432 assembly3_WGSMorex_rbca.fasta
CAGCCACAAGGACCATGTGTTGCAGCCCCACAGAAACCCTAGTACAGAGACTTATCCATC
ACAGTGGCCAAAGTGTTTCTGAACACTCGAACACTGTTGTCAAGCTTCATGGTCTGCCCT
TGTGCATTGTGTCGGACAGAGACAAGATATTCACCAGTGCCTTCTGGAAAGAACTTTTCA
GGGTTTGGGGGACTGAACTTCAGATGAGCACAGCGTATCATCGTCAAACTGATGGTCAAA
CAGAACGAGTCAACCAGTGTTTGGAGATGTACCTACGTTGTGCAGTTCATGACTCGGGCT
TCATGGCTGACTCAAGCAGAATTCTGGTACAATACAACTTACCACTCCTCTCTGGGTTGC
ACTCCTTACAAGGCTCTCTATGGTTATGACCCCAATATGGGACAGCTTTATGGGCAAACT
TTGCCTCAAAATCCATAAGTTCAGAGCTGGCTCGAGACACATTCAAAGCGCACAGCAAAT
CTGAAGGATCAGTTGGCCCGGGCACAGAGCAAATACAAACAATATGCTGATCGCAAGCGC
ACGGACAGGTCATTCGTGGAAGGTGATATGGTATATCTTAAACTGCAACCTTACGCGCAA
TCATCAGTGGTGAATCGTCCCTGTCCTAAGCTAGCAATGAAGTTCTTTGGCCCATACAAA
ATCCTAGCAAGAGTAGGGTTGGCAGCGTATCGCTTGGAGCTTCTGCGAGGCAGTCTGGTG
CATCCAGTGTTCCATGGCTCCAAACTGAAGGAACACATACTCATCACACACCGGTGTTCC
GAAATCTTCCAACACCGGTGGACTTGTCGATCCAAAACTCCAGCCCAAAGAGATTCTTGA
TCGGCGCTTGGTGAAGAAAGGCAACTCCACGCATCTTCACGTTCTGGTCAAATGGACCAA
GGTGCCGGCAGAGGCAGCTATAAAGCTCTTCGCACGAGGTACCCGATGGCATCAGCCTGG
GGACAGGCTGACTCTCTCTCCAAGGAGGGTACTGTCAGTACTCTGGCACTGACGATGAGC
GCGGGCACTGACGATGGCCGGGCAATGGCGATGCGCGTGTGACGGGTGGGCTGGGTGGAT
GCGTTGAGTGGGTCGTGGGCCGTTTCACGTGTAATGGACTGGTTGCTATATAAGCACCAG
AGATACGCTGTAACCGGAGCGATTTGAAATGAAGTAACTCTAGCCTCCCATTTCCTCTTA
TCCAACCACGTCTTCCTCCTCTCTGTCGTCCTCCTCCTCTCTGCTCAAAACCAGCTCCGG
CTACGCCGCTCCTACCTCCGACGCCTCGACCCCGAGGACGTGACACACAAAGTCTTTGCG
TTTTCTCAAAAAAATTGGAGTTCGGTGCTTCTTTGGGGAAAAGGCCAGAAATGGAGTCCA
TGAATCCAGGAGGAATTCCTTGAACACCATGGTACCATTAATTATCTGGAGCATATCAAG
GGAAAATGAGAGCTAACACTATGACCATGCAATTCTCCCAGGTTCTTAGAATTTGTTAAA
TATGCTGAAGTTGGTTATTTAAGCATTACAATGGAAGGGTAAATGATGACGGACAGACCT
AGAGCAGTGGTGAAGTATGCCCCACTTGTGCCAAGGAGTTCTGGGTTCTACGTGGACTCT
CTGATTTTAGTGTCACCGCTCTCTCCCATCGTCCTCCCTCGCCGCCGTCGGTTGACGCTA
CCAGGCAAAGCCCTGTGGCTGACGTCAGCAGCAGAGCCTCCAGCGTTCCGAGGTTGTACG
AAGGTTTACGGCAGAACCAGAGGCGTTCAAGCACGGCAGGGAGCGCACTGCAGCACCGTT
GGCGGCTGATCCTTTCTAGCACGACGACCCGGAGCCTAGCGCATCTGCATTGGCTGTGAG
ATGCAGAGGTCATGGCAGCGTTCGTGCAGCAGGGCTGGCACCAAGCATGTCATCAATGAT
GATGACGTGCGGCTGCAGGCTGCAGCGGCTCCTTGGTTGAGGATCCAACGACTGGCTCGA
CACCCCGGCTGGACTACGACCTTGGGGAACATCCTTTATGCAGCTATGGTGGGCATGCTC
GGATCGGGCATAGTGCTCCAAACGAGAGGCGTCATGGATGCGGTTGTGAGGCTCCTGATC
TAGCAGCGGCCGCGCCACGTTATCTGCTTTCGTGTTCTTGCTCGGCCATGTCGCTCCTGG
GCCTATGGTCTGAGCAGGGCTCTCTCTGGTGATGTGGTAGTGGCGGTGGTGTATTGTGCT
GTCGTTGTTGGTCCTTGTGGTGACTACGACTTGCCACACTCACTGCAGACTGCGGTGGCT
ACCGAAAGCTCTTCGTGAGGTTCCTCTCCCTAGATTCGGTGGTTCACTTCGATGGTGAGA
TGCAAAATATGGACAACGACTTGACGTAGAGGGATGGTTGTGCAGCGGCGTTGGTCGCAT
ATCGCATGTAGCTGATGGGATCATAAAAAAGTGGTGGCGCCAACACATAAGTGACGATGA
TGGTTGTGCCACTCGAGCACCTGGTCTCAAGCTCCGGGATGAAAGCCTAGGTCTGACTAT
GAGTTTGTTATACCTGGCGATGGCGATGTCTGTACGTCATTATCTTGTTGAAAGCATTGA
TCGGATACGCTTAGACTGGTTCTTTATGGTGAAAACCTAGATTCTGGCCTTGGGTGGTTG
GATCCAGTGACTGCAGCAATTCCGTTGAAGAACATCGTCATTCGTGTGGTGTCATACGAT
GGTTGGTGCGGATATGGTCATTGTTGTAGTTTGTTGATCGCGGATCCGATTGTTTTGGGT
TTATTTTTCTCGTCTACATATAGCTTTGGTCTTATATGACTTTGCTATTTACCGGCGTAT
TTTTTTGTGTGCGTGTGCATTCGTGTTGGTTTCTGTTCATCTTAGTTATGCAAAGGGCGG
GTGTGTGCTCATTATGTTTGTATCCTCTTGATGCTTTATTTTGAGTCAATAAATTCCACC
CTCTATAAAAAAACGAGGACTCTCTGCATTGCACTGTGCAGGGGTAAGAGGTTTGCCTCG
TATAATCCTCCCCAGGTCCCACCTGGTCTGGGAGCTTCTAGCACTGGGTTTGTCCTTTAA
TTGAAAGGGTACATGATGCCTATGAATAACAGACAATACGTTATAACAAGCTTCGCCTAT
CAGTAAGCACCAATCAATGCTTAGCAGTTTCACTACTTCGGTGGAAGATGATCTTATGAT
CACCAAATATTCTAACGTTCAGATTACTCCGCACCTTTTAGCCTATATAAGTTTCAAATT
CCACTTCCTAGGTAGCCTCCATTTAAATGGTTTTAACAATCAAGGAGACTGTTTCACACA
GGATAAAATGGCACCATTGAATTCATAACTAGATGAAGCTGAAAATACAACAGTGAATAC
ATCCACACATATGGTTGTCCAACCTTGTGAACAGAACAAAAAGTCACATTATTATGAAGA
ATTGATGATTTGTCGAGGATTCATGTGCATGTTAAGATGTTACCTTACGATGAGAGGCTA
CGGTGGCCCTATATAGTGCTGTTGTGCCAGGATAAACAGCTAAGACTTGCCGACCCTGTC
CAAAATCCTGAGCACTAGACGGATCTCCTTTCTTTGGAAATGGAATAATATATGACATAG
GTAACTTGTACTTCCTGTACACATGGTTGGGATGGAACAACATCAGTTTATGGGCCACAG
ACATTAAGGATAAGGCAAATTAGCCCAGAGTGTGCCAATAAAACTTCTTATTGCAAGGAT
ATGGATTTTTCTAAAGGAAAGTCAATAAAACAGCTGTGGTCTCACTGAAACTCAAACAAA
CAAAAATGAACAAGACGTAAAGAAATAGTACAATATGACAACTGATGTGGAATTGAGAAA
TTTAATGATCGGATGGACCTTTAAGAAATAAGGGGACAGCAAATTTATACATACGAGGGT
GGGTTCATAAATTTCAAGAATATTTGAAGATGCACAAGTAGGTAAGCTTTAGAGCTATTG
GAAGTAAAAAAATCCAGACTAACAAATAATTCAACTGAACTAACAACTAACTAAGAATTT
CATGAAGCATACCATAGCGCTGGATATCATTTTTTCTTGAATATGCAGGAGAGCTGTGTA
TTATTACATTGAGAAGGAAAATAGGGGGTCAGAATCCTTACAAGACACACACCCGGCCAC
CTACAAGCGGGATCTGTCTCTTACATCTCAGGGATCTGTCTAACTGAAGTTCAGAACTGA
CGAGAAATTCAAAAACAAATTCTAAGTAGTGGATTTTGGAGGACGGAAGCTTAGGGTTTC
AGGCACTCAGATACACATATTATGCCAGCAAGACGATCAGCAGTCCAGTATTTGTTGTGC
GCCACTAGCCACATGAAAAACTGTGGACTTTGTTAGGAAAGCAACTTATCTATATTAAAG
ACCCAAGGGGCATATATATATTACACATGACTTGAGGTGCAAGGAAAGTAAA