Map Locations of contig_66622 (11038 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_66622

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74835 1 142 bp None Available Available None
MLOC_74833 1 416 bp None Available Available None
MLOC_74834 1 1369 bp MLOC_74834.1 Available Available LOC_Os03g01270.1, FRAME:-1, EVALUE:1e-143, 13103.m00042 protein expansin precursor, putative, expressed





CDS Structure of MLOC_74835






CDS Structure of MLOC_74833






CDS Structure of MLOC_74834






Contig Sequence (11038 bp)

>contig_66622 11038 assembly3_WGSMorex_rbca.fasta
GACCCTTATAAAGGGGTCCAACTTGTCCTCCACTAGCGGGGTGGGACTAAACTTCCCACC
ATCTTGTCATGCCACCACCTACATGGGCCCTTGGAAATTTTTCTGAAATTGTCTTATGGG
CCTAAGGCCCATCACTAATTTCAACATGTATTAGCCACATGGACAAGAATGTCGGACCTC
ACAAAAATCATCAGTGTTGGATAGCCAGTCATCATTTGCCTCTGAATCAATGATGTTAGA
AACCAGTTACAGTTTCTTGGGCGTTTATAAATCTGTTTTTCTGTGCATCTAAAGTATCCA
CTGGGTATCAGGCTTCGAGTATGATTTATAGCATGAATGGCTTTTGTTCTTAGGTTTAAG
TCTTTTCAACAAAGCATACACTGGTGCTATTGATCGATGAAGTCTCATATATTATACCTA
GCGATTATATTCATATAAACTGTTGCACTATATCGCTATGCAAGTATGCATATACCGCGC
AGATTTGAGCTGAGTTTCATATAATTTCTTATAAACTGCTCCTGATTCCAACTTATGATA
CAGCGATGGTCTTAAAAGCCAAAACTTTTCATATACAACACATCTCGAAAGCTCAAATTT
ATATTGCAATTTCAAATGTGACTTTTTATTTCACTTGAAATTTTTGTGTCTACAGATGTG
GGCTGCATGTTGAGTTTCGTTATTCAGGATAGAAATGGATGCCATCGATTTACGTGGTGT
GAAGACATTATCAAGAAATATCAATGCACACTTGGATTTATTTTCATAAAAAGAGCTTAT
ATTTATGATGTTTGAGAGTTGAAAATATATATCATTTTTGTACGTTCAATTATTTACTCG
TCGCGTAGGTTCTGGACTTGCAGTTCAAAAAAATGTTCATCGTGTAATGTTGATGTTGTT
GTTTACTACATATATTGATGTTGCTTGAGAGGTAAACATATATGTCATTTTCGGGGAGCG
GCATTTTGGCTCACGGCAGCCCATGCTGCCCGGTGAAGTACTCCGAAAAAAATAGAAATG
ATTTCAAAATATGCCGAAAAAATTGTAGATGATCGTGTTGGTGTTACAAGCATGCTTGGC
AATTTTCATGCGGAACGGAGCTGGTCTTTCGTCGGTGAAAACAACAAATTTGGGGTGCAT
TTGGTCTTCGATTTGTTTTTTTTTTTGCGCACGACAAAATGCTAAACCTTTTTTGCCTTG
AAATTTACAAGTAGCATTTGAATGTGACAAAGATCACAAACAAAAAAGATTGTCTCATTC
TTCTTGTCATTTGAAAAAAAAAATGGCCCCGCGAGCCAAATGGAATTTCCGTTATTTTTG
TATGGTCAATTCTTTTTCCGTCATGTAGTTTCTGCCCTTGCAGTTTACAAACATGTTCAT
TGTGTGATGTTCATGGTGTTGTTTACTAAAACTTATAAATATGATTGTTTTCCATGTTGT
CCCTACGGAAGTAAAGATTCATGCAGTTATCTCTTTTGGAAAATCATCTTGGATATATTT
CAATAGTAATCATAGCTATATGATCATGTAAATTTTTTGTGAATGTTTTGTGAGCGAGTT
ATTGGTTTGTTGATTTTAAGAAGAACAATGTCAAAACTACATGCCACAAAAAAGTTGTGT
TATACTAAAAAATGGTGCCCAGAGATATATGCCTTCATAAATAATTCATTAATTACATGA
AATAATGAAAAATTGTCCGGGACATAGGTTCTAAGATACAACCTATAACTAATGTGAATT
GAACAAAGCAGATTATTGTCTTCCAAATTGCTGTACTTATGGTTAGAGGTGGTGATTGCA
TCACATGAAATTGAAGATACAAAAGATGAGTAGGTGGACCGATAGATGTTAGAGTCGTTT
CATGGTGTACCACTCAAGAAACTCTAATTACTTTGTTGACGGCTGATGTCTAACAGGATG
AGAGAGGAGTGAAGATGGAACAAAATATCAATTGAGAACTGTGAATACCGGAGAAAGCAC
ATTCGTGTGTGATAAAAGTGTGATATTATGACCATCATGGGAACATATTGTATTGAACAT
GAAGACACATTTTTCACGAAAAGAACATGAGAATAAATTGAATGTATTTGGACCAATATG
TCCATTCAAAGAACGTACAATGTCGCAACTTACAACAAACAAGAGCAGAATGTACTTGGA
CAGGGTAGACATATATACACACCAGTGACATAATAAACTTGTGTAATACAGGAGAAATTA
CAAACGTAAATTTATAGCTGCGGGCAATATATACTACTCGCTGCGTACTCCAGATCCCAC
AAACTAATTAAAGCTGCCACGTATGTTATGTACTACGTGTACATATGTAGCTTAGGTAGC
ACACGACGAGGACTTGCACCGGAAGTCACAGGCGACGTCTCAGCTATATAGCTTGGCACA
AAAAATCCATGCAGGCATGGACGTACGTGCATGCCTTCCATGGATCATCGGACGGGATCA
TTCATCGAACTGGACGTCGGAGCTGTACACGGTGTCGGGCTGCCAGTCGGCGGGGATGAC
CTGGTCGGCGACGAGCGACCTGCCGGACCCGTTGGTGACCCGCAGCGAGAAGGGCCCCCG
AAGCGGGCGCCGCGTGTCCAGGCGCCAGATGGAGCCCCAGGACTCCCTCATCGGCCTCCA
GGACACCGTTGGCTCGCCGCCGTCCATGAGGTCCACCTGCGCCACGTCGCCGTCGCCGTT
CCCGTACTCCACCAGGATCGCCAGGTAATTCGGGTTCGACCCCTTCTCCACGTGAAACGT
CACGGACAGCCCTGTGTACTGGCACGGCACCCTCTTGAACTGCATGTCGATGATGCCGGC
GTGGCGGAGCTCGTCGTTGCGGCCGTCCTTGGCCATGGCGCCGAAGGCAGTGCCGCTGAG
GTCGAAGTGGTAGCGGGCGACCGGGTAGTAGTTCATGTCGGTGATGATCACCGTCTCGGG
GTCGCCGGAGCACGCTGGGTGAACCTTGCCCACGCACCTTATCTGCGTGCAACAATGAAT
GCATCAGTTTGGAGCTGGATAAACGGAACGACAAGCACGTACTGTCAATGTCAAGCAAAT
AATTAAACGGCTGACCTGGTAGCAGGAGCCGCATCCCTTGCCGTCCTTGAAGATCGGCTC
GTTGCCGCACGACGTCATGGCGTTGAAGGGCGGCAGGTTCACGTTCTTGAACCCGCACGC
GCCACCGTTGTCCAACGGCCCGGCGCCATCCGGAGCGCCGTACCATGTGGCCCTGGCGTC
CAGCCAGCCGCCCATGGAACCGTTGGCGCTGCCAGAGCCGGAGCCTGGGCTGGGGGTAGC
CAGAGCAGGCGGAGGTGTAGCTGGAGCGGGGTCAGGTGTAGGTATGGGGTCGGGTGTCGG
TCCAGGGCAGAATGTAGCAGGGAGAAACCAGGGGCAGCCGCAGCAGCCGTTGGCGGCGAG
CAGGCAGAGGAAAGCGGCCGCGACGGAGTAGGAGGAAAAGGCCGCTGCCATGGCTCGCTT
GCTGGTCTCGTTGGTTACTGATCGATGACCCTACTCTGGTGGTTAATGCCGTTGGGGAGA
TTGCGAATTTATAGGCCAGCCAGTGAGGTGCTTCTGGAGATCAAAGGGAAGAAGGAAGGA
ATGAATGGAGATGACTGGTGATTGGCATCAAGGCCCTACCGGTTCACATGTGCATGGATG
GAGGCACTCAACCGGCTGCTTACACCCTTGCCCGTGGTCACGAGATGCATTTCTCTCTGC
TTTTATGTTTTAAAAAACATCTTCCATCATCAACCATACATTTTTTTTACGGATCATCCA
CCATACACATATATATACACTCTACATACAAGTACTGTGTATGACATGCCGGCAGCCAGC
ATATGATGCAGATTGCCGACCATATAAAGCCACATGATTTGTCATGTAACCGGTGGAGCG
CTAGCTCGCGTGTCTATGTACTTCCAAAATACCAAACTAGTATACCCATCTTAAGCTACG
TGCGCATCAGTAGCCGATCAGGACATGCTAAGATAATCTGATAGAGGTTTTGGTTACACG
CTACCCGTGAGGCCGTCAGTCCATGACACGGCATAATACAACCCTAGAATCCATCCGGTG
ACAAAATAACGAAGCATCGAAAGATACAATGGAACAAGACTAGTACAAATTGTTGGAACA
TCTACACAATCTGGCCATTGCAAACAAACCACCCACTTTTCTCCGGCCACGTCATGATCT
GTCTCTGCTGTTGTATAGTAAAAGTTGTCATGTTATACAAAAAAATTGTCAGGAAATTTT
CATGTTGCAGCCCAGTAATTGCCATGTACTTTCATTTATTTTTGCCATGATTGCAACATA
TAAAATCGTAAGCCTAGAAAAGGTAAATGGTGAAAATTTTCATCCTCGGAATTTGCAGTG
CTGGCTAAAGGGTTGCCATGCTATAGAAATTCTTCAGGAGCATAAGGACAAGGCCGATGA
GTTCGTGCTGCGGGCTGCGAGGAAGCAGATCTGACAAATACAATACGAGGTGCTTTGGGT
GGCCATCCGGACGTATTATCACACTGTTCTGGGCGAGAAGATAGCCAAGGAAGAAGCGCG
GCACAGAACCTTACCATGACTAGGGAGCAGTACATGTTGGTAAGTATAACATACTTTTCA
TTCCGACGTTTGTGGTAAATTTCATTGTTTCGTGTTCACATGCCATTATGATTCATTATG
TAGGTGCCTCCTAATTGGTGCTTTGGAAAGAATGATGGATGGGCGAGATTGGTGGATCTG
TGGATCAAGTTTTCTGCCAAGAGCAACACAAACAAGGCTAATCGAGGATCTGACGGAACA
CACGGTGAGGGAAACCGGAACCACTCGCATCACAAGAAACTTCAGGTATATATATGTACA
TGAAACATTCTTGATCTTCTATTTACCGTATGTTCTTTTGTGTGACAAACCTCTAATTGG
CAGTCTAGGAGGAGAAATTGAAGCGGCCGCTCTTAGACATCGAGTCGTGGGGGCTCGCCC
GTGCGCGGACTAATCGCAAGGCTGGTGGGGGTCAGTACTACGGCGATACCGAGGAGAACC
TGGCGTCCTACACAGAGCTGTTTTAGAAGTGGTATCCTGGCACATCAGACCCCATGTCTA
TGGATACCAACGAGATAGCGATGGTCAGCATATGGCCGAAGAGTCATGGTCGGCAGTCGG
TTCGGGATTCTGTGATCATCCCTTCTGTCTCCTGTGATCATCCCTTCTGTCTCGTACACA
CGAACCGGAGCTACCAAACCGAGGCCGAGGTCATGCCAGCACCCGAGTACGTCCAGTGCA
TAGTCCATCCTAGCCAAGCAGCACGCTGTAAGTATTTTCCCTTGTATCTTCATTCTTTCG
ACCCTTATTGTTCGCATTGTTGTGGTTTATCAGTTCCATCATGTCATATTGTAGGTCTAC
TTGGAGTTCGCACGTCAGCAGCTCTTTGACTGGAACCAGAGAGTTGCAGCAGCCACGGAG
CACAACACTCGCATGACGAAGATTATGTTTACATCTATAGCATTCGGGCAGATTCCGACA
ATGGTACCACCACCACCACCTCCTGGACGACAAGCTATGCTGCCTACGTTTGAACAATTT
GTGTCCCAACACTATTTCACCCGGGTTAGTACATCACCGAACTATTCAACCACAACTTAT
TGTTTAGTCAATACAATCATATATCGCCTTACCATCTCTTTTCAAACATGTAGGGAACCG
ATGGATCATCAGCCGGTGGTGATGCTAATGATGGTTCCACTCCCGAGTCAAGTAGCCCAG
TCACTCCGGTCTAGCGAGGTGTGGCGGTGACGGTAGCGGTAGTGACCTCGGCTTTGGTGA
TCTTGGCTTTGGCGATGGCGGTGGACGTGGCTTAAGCCTTTGCGATGACAAACTTGACGG
TCTTCTATGCCTTTTACATGACTTGTTGCTTTTCTTGTTATGATGATACTTTTGTTGTGA
TGTTGAACTTGTGATGATGTTAAACTTGCGATGATGTTGAACTTTCATACATGATTCTCT
TCTTTATTTTTCCTAGGTAAAATGTTTGGGGCACCTAGCATTTAATAGCTAGTATGTCAA
TTGATTAACATTTGTTGATTTGGAAAGAATGAAAATTTGCATTAATTAAAGAATAGGGCA
AATGTTTCCTACCACCCGGTGGTAGTCACCGTCACTTCAGTTTTGTATGTTGTATGTAGT
ATCTATTAAATCGAAGAGTATGTAGACGTACTGTATACTATATAAGAATGAATAGGGAGT
ATATATACTGCTTTTGTTAGTATGTCTCGTATTTTGAGCATGCTTCTTTTTACGTACAAA
TATATACGTTTTTTGGAAATGTAGTAAAAATCATGGGTCAACTTGCAATTTTTTCATGCA
ACTCACTTGCAACTATCTTATATATAGTATATCAACATACTTACAATGATAAATTAATAC
ATATACTATCACATGATAGTATATGAGACATGTGGGGTAACTACCCTAGGTGGTATTATG
TATTTTTCCTCTCTCTCTCTATATATATAGTATAGATTTTTTAACACCCGGTGACTATGC
CACCCCTCTAGGTGGTAGTGCCACCCCATCTTATGTCCGTTTAATTCATGCCTCGTGATC
CATGCAAAAACTATGCCATCATCATTCCTCCATCGGGATTCAATGAATGAGGCATGCTAA
TGATCACACTAATACGGTTCTAGTAGATTATGTGTTAAACTAGGGATATCAAAATGTCAG
GTCATGTATACTTGACCAAAAAGATTCCCTAAGAGTATTCAAAATAGTATTGCTTCCTAA
CTTTTGTAATAGTACAAATAAATTGATTGGTGATTAAGACTTATATTCCTAAAATAATTT
TTTCGTGAACTCCAAAAGATTCCACCAAAAAATATCCTTGCGTATACATAGTATCAATAT
TTAACATTGTTACCGCTTAGTGCTAAGAAATCATTCGTGTGCAATTAGACAAATGAAAGA
CTAAACAAATGACAAACATAAAAGATGTTGCACGGATCTCAAAGCGTGATCAAATGGAAG
CTAGGGGTGGCAATGCCCCCTTGGCAAAGACTTAATAATCATATAGAGTGTGCGTGTGTG
TGCGTGCGTGCGTGTGTGTGTTGTGTTGTTTATTTAAATCAAAGTAGAAAAAGGGGAAAC
AAAAAAACAGAGAACTATGCTGACGGTTTAACCATCATCATAGATGGGTCGAGCCACCAA
GGGCTGCCACGTGGCGGGCGCTGGGCTTTCCTGGTGTGCTTATATGCTCACGGTTAAACC
GTCGGCGTAAATATGGATCTATGATTACGGTGTAACCGCCGGCATAGAGGCGCCCGTAGC
ATCTGCTGGCAGTGGCGGAGCCAACTCAATGTGATAGCCTGGGCAACATATGAAGGCTCT
AATGGCCGGCAGTTATTTGATGATTTGCCCATAGAAAAACTGGATTTTGTTCAATCTTGT
CATTATTTTAAGGAATGGATTGCAAGCTAAGCCTGGGAAACTGCCGGGCGGTAGCTCCGC
CATTGTCTGCTGGGCAATCCTAGTACAAAGATAGGCCGCTGGTTAGGCGCCGGTGTAACC
GTCGGAGTAGCTTCATACCTGTATTGCCCAGCAGATGCCACGTGGCTGTATGTGATTGGC
GTAGGTTTGACGGCGGCGCGACCGTCACACGTAGAATTTTGTCGACGGTGTATGTATGCC
GACGGCTGTATGAAGACGGTCGGCTTAGCCACCTATGCTAACGGTTTTTCTATGATGACG
GCCGCTCTCCGATACACCGACGTACGAGTTGCCGACGAGACTATGCCGACGACCAACATC
GGCATAGGCCTATCCCGACTGTTTTCGGGCCTATGCCGACGGGCGTTATTCTGGTAGTGA
GACTAGTACAAATTGTTGGAACATCTGCACAATCTGCCCATTGCGTACAAACCGCACACT
CCTCTACAGCCACGTCATGATCTGCCTCTGCTGTTCTATAAGGATTTGGTATGTTTTAAA
GTAAAAGTTGTCATTTTATATAAAAAATGTCAGAAAATTTTCATGTTGCAGCCGAGTAAT
TGCCATGTTCTTTCACTTATAAAATTGTCAGCCTAGCAAAGGTAAATTCTGAAAATTGTC
ATCCTTGGAATTTGCAGTGCTGGCTAAAGGGTTGCCATGCTACACCAACGAAAAAGGTGA
ATTGCCATTCTGTAAAAACACAAATTTTCATCCCAAGTGTGTTCGTTCAGATTTCCATCC
TGAGTTATGTTGTCAGCTCCAAGTTTGCTCAGAAAGGTGTGTGGAAGTGAGCACTTTAAG
ATTCACGTGTGGGATCCGACATGCTGAAGGGTGTTCGCTCGGAATGGCTAAGGAACTGGC
GTCGGATCATTAGCATTTACTAGGAATCTACTTTATTTGAACAACACCACCTGGCGATAA
GTCATGCTGGATGCAGGGGTCTACAAAAGCTGCAAATCCAAGCGAGCACTACTACACACG
TACATAAATTTCATACGACTCTCATCCAACGCTCCTCAACAACCCTTCGATCAAGCAGAA
AGATGAAAATCTGACGCATGGTAGAAGGATCAAACACACACCAAACAAAAAAAGTCAGAC
GCAAAGAAATATCGAATCCAGGCACACTCCTGTCGAGAAATCACAGCCGGTTTTATTAGG
ACAAGAGCACGCAAATTGGCCTTACAGCTTATACAATCAAATTTAAAACTAGTGAACACC
CTACTAAGCCCATGAATTTTTTTAAGAATAGAGAGAATCGCCGCCCAGTTCTTTTTTTCT
GGTCTTCCATGGTTCAATAAACTCCTCGGAGTAGGTTTCCAAGTGGGCATGAGCAGCTTG
CAGTTTTTGGTAAAGAGGAATTCCATCTCCAGCAAGAAATTATGCTTCATGGTTATGTAT
AACATATCCCGAAGATCCCACATGATTTCGATCCACTCCCGAAACCTGATAGCCTGCAAG
TGCACATGGTTTAATTGTAGCCTTTTTCAAGTAAGAGTATCGATCCTACAGGGACACATG
AATCACGCTTTTGCTCCTCATAGGGAATTATGTAACTTTGTGTCTGGAGATAATTATAGA
CTTAAAGAAGTGTGTGGGCGGATTTAAATGAGATTCAAGTAAAATGGTGACTTGTAATTA
AATAACATAAAAGTAAATAAAAACAAGAGTAGTAAATGATAGGGAAACAACAGAATTAAA
GGTGTTCTCAGGGAGTCTGGTATCCCCATTGGTATGTTTCTAGTACTACTATGCAAAAGC
ATAGCATGAAGCGGATAGTTGACGATTATGCTGGGCGGAGTAGGGCATCGAACACGTTCA
ACTCGTTGTCGATTTCGTGCCATGCACACCACTATCATAATCTCGCCTCTGGGTTACAAC
TCATGATAATTAAGGGTTTCCCCGTGGACGCGGCCTCACTAAGGGTTGCTTTATAGTTGA
AAATATACATCATTTTTGTATGTTCAATTATTTACCTGTCGCGCAGGTTCTGCACTTGCA
GTTCAGAAAAATGTTCATTTGTCATGTTGATGTTATTGTCTACTACTTATATTGATGCTG
CTTGAGAGGTAAACATATATGTCATTTTCGGGGAGGGGCATTTTGGCTCCCAGCAGCTCA
TGCTCCCCGGTGAAGTACCCTGAAAATAATAGCAAATGTTTTTGAAATATGCTGAAAAAG
GTTGTAGATGATCGTGTTGGTGTCACAAGCATGCTAGACAATTTTCATGCAGAACAGGGC
AGTGTTGTTTCGTTGGTGAAAACAAAAATTATGGGGTGACATTTGGTCTTCGGTTTTTTT
CTTGCACTATTTACAAATAGCATTTGTATGTGACAAAGATCACAAAAAAAAAGATTGTCT
CATTTTTCTTGTTATTTGAATTTTTTTGGCCCGGGAGCCAAATGGAATTTCCATTATTTT
TGTATGTTCAATTCTTTTCCCGTCATGTTGTTTCTGCCCTTGCAGTTTACAAACATGTTC
ATTTTTTTATGTTCATGTTGTTGTTTACTAAAACTTATAAATATGATTGTTTTCCATATG
TTGTCCCTACAGAAGTAAAGATTCATGCAGTTGTCTCTTTTGGAAAATCATCTTGGATAT
ATTTCAGTAGTAATCATAGCTATATGATCATGTAAATTCTTTGTTAATGTTTTGTGAGCG
AGTTATTGGTTTGTAGATTTTAAGAAGAACAATATCAAAAATATATGGCACAACAAAGTT
GTGTCATACTAAAAAAATGGTGCCCAGAGCTATACCTTCATAAATAATTCATTACATGAA
ATAATGAAAAATTGTCCAGGACCTAGGTTCTAAGATACAACATATAACTAATGTGAATTG
AATCACGTGAAATTGTCTTCCAAATTGTCTTCCAAATAATGGGAACATATAACTAATGTT
CCAGGACCAGGACAAAGCAGATTATTGTCTTCCAAATTGCTGGACTTATGGTTAGAGGTG
GTGATTGCATCACATGAAATTGAAGAGATAAAAGATGAGTAGGTGGGCCGATAGACATTA
GAGTCGTTTCATGGTGTACCACTCGAGAAACTCTAATTACTTTGTTGATGGCTGATGTCT
AAGAGGATGAGAGAGGTGTGAAGATGGAACAAAATAACAATGAAGAACTGTGAATATGGG
AATGGGAGAAAGCACATTCATGTGTGATAAAAGTGTGACATTATGACCATCATGGGAACA
TATTGTTTTGAACATGAAGACACATTTTTCATGAAAAGAACATTGAGTATAAATTGAATG
CACTTGGACCAATATGTCCGTTCAAAGAACGTACAATGTCGCAACTTACAACAAACAAGA
GCATAATTAATGTACTTGAACAGGGTAGACATATATATACACCAGTGACATAATAAACTT
GTGTAATAAAGAGAAATTAAAAACGTAAATTTATAGCTGCGGGCAATGGCCAGGAGAGCG
CATATACCGTATACTCCCTCCGTTCTTAAATATAAGTCTTTCTAGAGATTTCACTAGTAG
ACTACATACNNATGTATATAGACATACTTTAAAGAGTAGATTCACTCATTTTGCTCCG