Map Locations of contig_66509 (5668 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_66509

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74775 2 433 bp MLOC_74775.2 Available Available None
MLOC_74776 1 156 bp MLOC_74776.1 Available Available None





CDS Structure of MLOC_74775






CDS Structure of MLOC_74776






Contig Sequence (5668 bp)

>contig_66509 5668 assembly3_WGSMorex_rbca.fasta
TATGCTATGCGAAGTTATTACGTCTTTTCAGTACATGTACTTGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GTCGCATCTTGGGCGTGACAGGTGCGCCATCGATTCTGGAAAAGGAATTGATGTCATAGG
ATTCGTCTATGACAAGATCGTGGAGAAATTCAAGGGCTTGGTTATTTCGAACGATAAAAT
TGAGGCGCTAGGGTTTTATGGGGAATGGGAAAAGATAATGAGAATTCCATGCAACTATAC
ACTTGCCGCATGAGCTAGTCGGTATTTGACAAGTCAGTCAAAGCTAAAAACAGCCTATAA
TATGATATAAAAACACTCGGGGGTTGATCAATCCGTTTTAACACGTTTAAGGGGTACTTT
CTATATGGCAACCAACGCGTCGGAAACCAATGAAGCACGCACCCAACCGCTCCCTCATGC
GCCGGCCTATGTGCGGGGTAAGAAGCCCCTTGTTTTTTTTTGCTTTTTTCTTTCCATTTT
AACTTTTATTACTTTAAAAAAATAATTCAAGGTTTTAAAAAATTTGCGAATTGTGAAAAG
AATGTTCACGAAATGATAAATGCTCACGTATTCAACATAATTCATGATTTCAAGAAAAAG
TTGATCTATTAAGAAAATCTGCACAATTTTCAAAAATATTAATGAATTTCATAATAAAAA
TTCCAAAAAAAGTTCATGTATACATGAATTATATAAAAAAATCATGGATTTCTATGAAAC
CTTCACAATATTCAATAAATGGTCTGGTATTTAAACAATTGTTCCCAGAATACAAAAAAT
ATTTGCTTATTCAAAAATTATTCGTGAACTCAAACAATGTTCATCACAAACATTTTTTCC
TGAAATTAAAAATGTGTTCCCATATTTCAAAAATTGTTCACTCGTTCAAAAGAAAATGTT
CATGGTTTAAACATTTATCATGATTTTTAGAAACATTCACAATTTCAAAACAATGTTCAT
GAATTTCAAAAAATGATAATGATTCAGAAAATGTTCATGAACATGAAAGATGTGTGCAAA
TTGGAAAAAACAAAGAAAGAAGAAAAGACATAAAAGAAAAATAAAAAACCCAGAAAGAAC
AAATGGAAAAAGAAAAAGATAGAAAAAATAGAAATGCAAAATAAACAATTTAGGGCTAGA
ACCTCCCCAAAACCTGGATAAGATGAAATCGGGGAATGGGCTGGCCAATACAAATAGCAG
CACGCAAGGGGGGTACGCGGTAGGTCGCTGATCGGCGAGCTAAGAGCAACTAGTTAGCGA
GCACTTATTCGGGAGCCTCCGAACGATCACTCCCACACGCCACCACTTGGCGCGTTCTCA
GCTCCGCCACGTGTCACGCTCTAAGCTTACTAACCAACACAACCATTGCACACTCGTGAA
TTTAGTAGTGCTAAATTGTAAGAACAATTATGGACTCACTATTTATTCATCACCTAGTTT
TTTATTTCTTTTTAAGAAATTGTGAATTTAAAAACGTTCATCGATGTTGAGACAAAAAAT
TCACAAACTTAAAGAAAGTTTATCGATTTTGAGAAATATTTCATCTTTTTGAGGAAAAGT
TCACAAACTTAGAAAAATTCACCGATTTTTAAAAAACTTTATGAAAAGGTTTAAAAAAAT
TATCATTTTTGAAATAAAATTCATTGTTTTTTTATAAAAGTTCATCGACTTTGTCAAAAA
AAACATCGAGTTTGAAAAATAGTTAATTTATTTTGAAAAAAGTTCACAAATTTGAAAAAT
CGTCAATCTTGAAAAAAGTTCAACAAATTTAATTTTTTTTTATTGAATTTGTAAAAAATT
TAAAAATATTTGAAAAATCTTTTAGTTAGAAAAAAGTTCATCCAAATTGATGGTAAGATA
AAAGGAAACTGTAAAAAAAGAAAAACTAAAACAAAAAACAAAAAAGAAGAAAAAAGAAAG
AAAACATGATAAGATAAAAAATGATGGAACTTTGTGCATTACGTTTCCGTGGTGGGGTGG
TTACTACAGTGCGCAGTCAGTCAGCAGATCCCCGGTTTGATTCTCAACTCTTACCAGTTG
CCGACGCCTGCAGCGTTTGCCAGAGCTACATGCCAAATACTTGGAATGACCCGTTTAAAG
TACAGGACTACAGGGTCTTTTGAGATGGATTTAACGGTGAAAACTATACTTTCTGACATT
ATTACGTGGGCTTTATGGGTCACTAGGCAACGGAATAAGCCCAACCCAATATCGAACAGG
TCTATGGGCAAGTACCAGCGAGGTATCCCTTGCCACGACGTAGCAGTCGTTCACACACCG
GTCCAGAGGCCGCCGCCGCCGCCGCCGCCGCCGTCGGCCGCTACGAGAACCCCAGGTACA
CTGGCGCCCTCAAGCATTGTGCCTCCTTGAATCCCGCAGTTACTCTCCACCTCGAGTCCC
TCTCTCCTCTCCCCCCGGCCCCCGCCATCCATCTACTGGATCGCTGTGGAGTGATCCTAC
CGGAATGGTTGGAAACCTAGAGGTTGATCCGACTGATCTCGCCAGGTTTGATCCGACGAC
CGAGCTCCATGCCTCCTCCGAGCAACTACACCTCCCTCCGGCGACGGCGACAGCCTCGTC
TACCTTCTCCTCCTCCGGCTACGCCTACTCTCTACTCCGACGCGCTCACCGCAGTCTCTC
ACCGACGTGCTAGATGTCCCCAGACCTGCGAAGGCTAGCCGAGTCTCCTCCTCTTTGCCT
GTTTTTTCGATGCTCACCCCGCTCTTGGGTGCTGGGGATGGAGAGCATCTTGTCCCCACT
GACTGCAGTTCTTCCTCAGCAATGCGAATGTTTAGTTGACCATCACCTTGTTAAGCAGCC
ATGAGTGAGGTGTCCCACCATTTCCCCGCGGATGAACTTTGTGCATAGATGTATCTTTGC
TAAACACTGGCAGGATAGGTAGGCCATCATATATCATTACAGCCCATTTAGCAAGCTTGG
ATGGCACCGGAGTCTGCTTCAACTAATTATATTCACAAGGCAACCGAGCTGTCCACAGAT
CTGTTGTAGATGTTGTGGTTTCAGTTTCCTAACCCTCTTTCTCGATGGCAATTGATCTGC
AGCTTTGCATCTTGGGGGACAACTTCTGAGAAAAAACCATCGCTAATCATGGCACAAAAC
TGATTGCATCTAAACCCTTGTCCTATTTTACTGGTTCCTGAAACAGCTAGAGCCAGTTGC
TGCATCTATGTGCACTGAATTGCTTTCCTCAAACAGCTAGAGCCAATTGCTTCATCTATG
TGCATCGAATTGCTATATATTCTGGTTTCATCCTAGAGTTATTTATACATAGCCGCAACG
ATCTAAACTCTAATGCTTTTCCATGATTCAGTTGCCACTTGCTTTGAGTGTGTGGGCACT
GCAGTCCGCCTGTAACTTAGCCCCTGGAGCCACTGAGCAAGTACTCCCAGTTCCTTAGGA
TTTAACATGAGTAGCATGCCTCATATCATGGATATATGATAATTCATGAAGTCTGATCAC
AGCTTTCTCCCAGAGTAGAGGTTATATCAGTTCCTGTCTTTTTTTCCCATCATTAGTTCT
TGCCAAATAGAAGTTCTCGCCAATTAGGTCTCTTTCTTGCTTTATTTACTTGTATGACTT
TATTTTCCTTACACTGTCTTGCTTGTGTGACTTTATTTTTCTTCCTCTTCTGGATATACT
GAAGGACTGAACATAGTGCACTGCAATTAGTTGTCCAAACATTATGATTTGTTTTGATCT
TTTCACAATATTTCTGATATTTTTTTGCCTGGAATCCTCCCTGGTAACCAAAGAAGCCCC
AAATAACCCACCCTCTCCTTTCCTTCTCCATGAAATGCCTGGATCAGTATAATTACTGTG
AATTTGCAGTGTCCACAGTTTAGTAGAAATTGCTTGTGGAAGAAAGGCATCTTCTTGAAC
GGGTGTTCACAAGGTCTTGTAGTTTGCTCTTTGTCTCTTGGGTAGCAGCCCAAGGCCCAT
CTAATTTTATAGATGTTGTGATATGTTGGTCTGTAATGTTTGTGTTGATCAACAAAGGAG
CAATTCAGGCCTGTTTACTACTCCCTCCGTCAGGAATTCCTTGTCGCAAAAATGAATAGA
AATGGATGTATCTAGAACTAANNNACATCTAGATACATCCATTCCTCGGACAAGTATTTT
CGGACGGAGGGAGTATTTGGATGATCCTTGCTTTGGAAGCTGGTACTTTCATGCAGTCTC
TTACTGCTTGTACCAAGGTCCTTGGTGTGATTGTAAGGTTGTATCCTCAAATGCACGGAT
ACTTCAGCCGACCAGCGAATTCGTATTGGATACCGTATCCGGTACTGATACTCCTCCGAT
ACGCCCCCGATACATAGGATACTTTGCCAGGACATTTTGGATGCTTTTCCATCCCAGGTA
AGAGCCCACTCAGCCCAATTAAGAGGCAACCAGCAACCCTAGTGCCCCGATGCGCCCCAT
CGGTTCCCTCACAGCATCTTTCCTCCCTCCCGTGCTCACACCAGCCGGTCGCCAACGGCT
GCTCACCCAGGTCCCAGGGCCGCCGGCGGCGACGGCGGCCGCTAGCCGGTAACGAGCTGC
TCCTCCTCACCAACGTCCTCTCTCACGCAGCAGCCATGTATGTACAGTTCTCTTCTCCAT
TTCTCCTGCCCAGCCAAGCTCATCTCCTCTTCTTTCTTCTCTGATCTTTGAAGATCTCTT
ATTCTCATCTCCTCCAGATTGCTTTGAGTAGCTACAACGTATCCGTATTGGCACTTTTCT
AAAATGGAGAATTTATGTATTCGTATTGGCCCGATACTGATACCCGTATCTGTATTGGTG
CATTCGAGTTGTATCACATTTTTGGATATGGTTCTGTTCCCTTGTTTCTTGCAAGTTGTT
GATATATAGCTTTTGTGTGCATATTGGTATTTTTTAATCTATACTCTTTTCTGTGGTAGT
ATGTTGTACTGGTGTGTGTGCCTTGAACCTTTTTGTAATGAAAAACATTGTCTGGATTAT
TTTTCCTTAATTGCTGTAGGCGAATAATAAAGCTTTGAGATTTACATGTTTAAGTAGCCG
ACTTTCTGACTGACTATTTCAGAGTAAAGGAAGATGCCTTCACTTCAGAAAGCTTTACCT
CCAGAACTTGCCGATAATGCGCTTAGAGTAAGGCTCCTATTTCACCTTTTTAATAGACAA
ATTACCCCCATCATGACCTGTACATGGTGATGGTAATGAGTAGTAAGTTCTGAAATTTCA
TTTCTGTAGTTGGAGTAGCTCTGTCAGTTAGTTTACCCTTTTAGCTTCAGCCTTTGCAAA
TCATGTCTAGTACTCTCGTGCACCTAGCTGAGCTCTTCATCATCATCAGAACTGGTCACA
CAAAATAATAAATAAATGATGGCATGAGGAGAAAATGTTATCGGCGCTTATAAGCTCTTT
TTGTTATGATGTAGTTATACCGCGAGTGCTTAAGGAGGGCTAAGTTCATCGGTAGTCAGG
TAAGTGTACTTTTGTTTGAACTATCTTTATCTTGTACATAGTATTTCTTAACACGCACTC
AGCTTGCTCTGTTCTCCTCAAGTATATTTAACCCTAGAGTGTTCCAGGCAGGGACGGAGC
CAGAACGGTTGGGGGGGGGGGGGGGGGG