Map Locations of contig_66478 (9146 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_66478

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74755 2 2707 bp AK356297 Available Available None





CDS Structure of MLOC_74755






Contig Sequence (9146 bp)

>contig_66478 9146 assembly3_WGSMorex_rbca.fasta
CGTGGTCGTCTAAACGGCAACCCACGGTCTCACGGTCGAGCGCCGAGGCTGAGTACAGGG
CAGTGTCCAACGTTGTTGCAGAGTGCACCTGGCTGCGACAGCTTCTTCAGGAGTTGCACT
GTGAGGTTCCCAAGGCCACACTTGTCTACTGTGACAATGTCTCAGCGGTCTACCTCGCGG
CCAACCCTGTTCATCATCGCCGGACGAAGCATATTGAGCTCGACATCCACTTCGTTCGGG
AGCATGTTACCCTTGGCCGTGCTAGCGTCATGCACGTACCCACCGATCAACAGTTCGCCG
ACGTTATGACAAAGGGACTACCTACTTCGACCTTGGAGGGCTTTCGGTCCAGTCTTTGCG
TCATCGGCGCCGCTTCGACTGCGGGGGGTGTTGAACATGTTGTATAGGTCCACGTTGTGT
GTGTGCACCTGTCACGTCTCCCTCCCCTTGTAACGTATTTGTAACTTGGGAGACAAGACT
TGAGTGCCCCCTGTACCTATATATATGCCATGTACATGATCAATAGAATTATCGATGCAC
AATTCTTTCTCCACAGTCTCCCGCACGATGTGCCCTTTGCAGAACCAACCGTCCTCCCCC
CAGCCCATGCAACAACGGAAGACGACAACTCTTTCACATAGGTCCCACAACTGTGATATA
TATTCACTAGTAGTGCATGTTGCTTTTTCTGTGTTTCTTCTCTCTCCCGATCATTCCAAA
GTGGTGGTCGAGGTGGTGCATCAAGGTGATCGGCATCGAAGGTGATGATGGACAACCATC
ATCATCGGTTGCTGGGCGAATCTGCACCATCGAATGGGGAATCATTCGCTCCCCCTCCTC
ATATTGGCGCCCCTCTTCCATCTATATTTTTGTTAGGGTCATCGAAGACATGATCATTGT
TGCACCATGAATCGTTACTCCCACCGCCATTCAAGTCTTTGTTTTGCATCTTTAATCCAT
GTGACGACAGAGATATTTGTATGGCCTTACAATATTGACCCCCTACGCCATGAATTGTGT
TAGGGTTTGTTTGGGTGTTTTGAAGGAGGCAACTCTGTCAAGCAAAATGATTGATCAATT
AGGGCAGTAGATTTAGCAACATTAATGATCAAATTTGTTTAGTAATCATGTGGGACATGT
TATTTCCAAAAAACTGTAATGTGCTGCAATTGAATTTTTTTGTGATGTTGGTAGCTGAAT
TTCAGTGCAGTAGAACAATTTGTTTACTGATTTTTGTGACACATGTAGTAGTACTGGAGT
TATCTGAAAATTTTGTGTGCTGAATTTGTATGCAGTTAGTTAACCGCATTTTTGTGACAC
TGCAAGTCACCGCAGTTAAGGGAATTGCTTAATCTATTGAACTATCGTATGTCGTGTTGG
TTAACTGAATTGCTGAAATACTGTGGCATTTACACTTGTACAATTATCTGAATTGTTGTG
ACACTGCATTGAAGAAACACAAAGTCCCAGCAAAGTACATTACCCTCATCAAGGACATGT
ACGATAATGTTGTGACAAGTGCTTGAACAAGTGATGGCCATACTGATGACATCCCAATTA
AAATAGGACTGCATCAGGGGTCAGTTTTGAGCCCTTATCTTTTTGCCTTGGTGATGGATG
AGGTCACAAGGGATATATAAGGAGATATCCCATGATGTATGCTCTTTGCGGACGATGTGG
TGCTAATCGATGATAGTCGGGCCGGGGTCAACAGGAAGTTAGAGCTATGGAGACAAACCT
TGGATGGGCAGGTGGTTCCTCAGAAGGACATCTTTCAATATTTGGAGTCAATGCTGCAGA
AGGATGGGGATATCAAATGAAGAAGTGAACCATCCAATTAAAGCCGAATGAATGAAGTGG
CGTCAAGCTTCTGGCATTCTCTGTGACAAGAGAGTGNNNNNNNNNNNNNNNGGCAAGTTC
TATAGGACGGCGGTTTGACCCGTAATGTTGTATGACGCTGAGTGTTGGCCAACTAAAAGA
CGACATGTGCAGCAGTTAGGTGTGATGGAGATGCCCATGTTGAGATGGATGTGTGACCAT
ACAAGGAAGGACCGAGTTGATGAGAAGTTTATCCAACATCGTCTGAAATGGTTTGAACAT
ATTCAACGCAGGCTTTCAAAAGCTTCGGTGCATAGCAGACGGCTAAAACGTGCTAATAAT
GTCAAAAGAGATTGCGAACCTGACATGGAAGAAGTCCGTAAAGAGAGATTTAAAGGACTG
AAGTATCTCCAGAGAACTAGCCAGGGACATGGATGTATAGAAGCTTGTTATTCGTGTGTC
AAAATCATGAGTTGGTCGCAAGATCTTATTGGTTTATCCAGCTTGTTTGGGACTAAAGGC
TTTGTTGTTGTTGTGACACTGCATTTCTGAGTTATCTGAATTAATAAACTGAAGTTGTGC
TATGTTTTGTTCTGTAACATGGTCATATGTATCCTAGATCTTTTGGGAAAACTTCACTGC
AATATCTTCGCCAGACGGTCCGATGCTTCCTGGCTGAATACAAACGACTAGCAGAGTCAC
AGCAGGGTAGATATCCTTCCCACAGGCACTCAGCCTGACGCTAGTGAAGCCTGCACCCCC
TTTTCGATTGCTGAACCGCTGAGCTTTTGCTTACATCCTTTTACAACACCAATACATATG
AAACTTCCATGGGGTAAAACTTAAAAAGACAGCACTTGCTGTTTTGAACAGCAAGTTTCT
GAAAAGAAAACCAAAACAGAACATGACAGGCATAATAATTGACTACATCCGTGTAACATG
TTGCGTCGCAATAGAATGAGACAGTTATATGTACGATGTCCTTTAAACAATGGCGGGCAC
AGAATTGAAAAGAAGAAATAATCTAGCATTCAAAATATGCAATGTCGCACCTGTATTGCT
TCCCTATCTAAACCAAGTATGATGCACTTCTCAACTCAGAGGCTTCATGTTGGGCAAAAG
GCAGGCGCTGGTGAGTCTTGCCAAGTCACAGATATGGCAATAGTTCACGATAATGCAACA
TCCTCCGATAATCTCATCTTTCAATTTCCTGCATGCCAGCCTAATGGTGCCAAGAAGGAA
CTGCACCTAAGTTTACCCCACTTTGCAAAATGGTGAGCAATGACTTTCCAATTACTGTAC
ACCGATTTACAGTCGGAACTACCACCTTGATGCAACAAAAGGTAATATGTCTAAGTTAGC
GCAAAGGCTTCTTCTTGGAAGGGAAGCTGTGGTTCTTCTTGGAAGGGATGAACTACTTTG
TTGATCTCATCTGCCGTGAGAGTTTCACGCTCCAGCAGAGCATTCGCTAAAGCATGTAAT
TGCTTCTCATGCTGAAAAAAAAATTGGATCAGTTGGGCACCGAGTTAACTAAAAAGTAAA
TATGTTGACAAAAGCCATAATGGTTTAGAAGCAAACCTTCTTCAGCAAATGTGTGACCCG
TTCATAAGCTTCTCTCAGGAGTTTGCCCACCTGCAAGGCCATATGATGAGACAAATGCGA
GAGAAATGGTAACTATCCCCTCTGGTAAGAGAGGTTCATGATAGCTCGGTATACTGATAG
AGTATGCAAAAGTGCAGCATACATCGGTCGCTAGCTTATACCGGTCAGTGGTCATATGCT
AGAAAAAAAGCATTCACAGCCATAAGACCAGCGGAAATGTACCTCTGCATCTATTCTTGA
CTGCATGTCAACACTTGGTCGTTCTTTTACATGCACAGGACCAATAACATTACTCATCCC
ACAGTTTGATACCTATACAGCCAGTCAAATGACATTAGACACATCTAACAAGAAAAAAAA
GAAATCTAAGTGGGTGAAATAATCACCATATACTGAGCGAGCTCTGTTGCAGTATGAAGA
TCATTTCTTGCGCCAGTTGTAACATTTTCTTCCCCAAATATGAGCTCTTCAGCGACCCTT
CCACCCATGCAAACATCAAGACGTGCCAGGAGTTGTTTCTTGCTGATAGAAGTCTCATCC
TGTGAGGGAAGTTGTGTAACCATTCCAAGGGCAGATCCACGAGGCAGGATAGTTGCCTTG
TGAATGGGATGAGCACCCTTAGTATTGAGTGCAACAATAGCATGCCCACTTTCATGGTAG
GCAGTAAGCTAAGAAACCAAGAAAATAACAAAAATAGTTAGTGCAGAAATTCACATCTTC
TTCAGTTTAAAATTTTCAAAGACATGGATGCTACAACTACTAGTTCAAGTGTGCTTAAGA
AAAAGGAAAAACAACTTGAACAAGCATGCCTTTCTTGATTCGTCAGAGATGAACATTGAT
TTCCTCTCAGTTCCCATGATGATACGATCTTTGGCGAACTCCAATTGTGAAGCAGTCAAC
TTGTCAGCACCTTCAACAGCAGCCTTAATTGCTGCAATGTTTACTAGGTTTGCAAGGTCT
AACAGAAAAAGGGAAAAAAGATGAGCCGGTATGAGTCTCACCACCACAGCACCATATTGC
TGCCAAAATTTATAGAAGCTTCAAAGGTAAGACATTTACTATCTTATTCTAATGGAAAAT
AGATGGAATGTCATGGCTTTATAAGTGTTACAAGTTAGGACTTAATAAAATGGTGACGCA
GCAGAAAAAATAGGAATCCAGCTGCTAATGAGAAAGTACTATCCCATCGCTAGGCAAAAC
ACCTCATAGTCCACAAACTTAGATGACATAATGCTGCAATTATCATTTCAATGAGATTTA
AAGGGAAGTTGTACGCACCAGCCCCATTAAAGCCAGGGGTACTGCGGGCGATTGCGTTGA
CATTCACATCAGTGCCCACAGGCTTGTCTTGCAAATAGAGTTCCAGAATATCTTGGCGGC
CTCGCACATCAGGACTAGGGACAACAATCTAGTAACCAATGCCAGCAGAACTAAATAAAA
TTACATATTTACAGGAAACTTGTTACAATAAATCAATATGTTATTGCTGTTCTCTAAAAA
AATAAGAATTAGATGATAATGGTTGTGAAGATTAAAAACAATCTACTCAAGAACACTTAC
ATGTCTATCAAATCTACCAGGTCTCGTAAGTGCCGGATCAAGAATGTCTGGTAAGTTTGT
CGCAGCCATTACTATTATTCCCTGTATACATCGATTGTAAACTAGTTAGACAAAGTTCTA
CATCACTCTATTCACTTATGTGATAATGTACCTCATTTTGTTCAAAACCATCCATCTCAA
CAAGAAGTTGATGCAATGTTTTCTTTGTGTGCCCTTCCCACTGTTTTCTAGTTGATCCCA
CTGCATCTATTTCATCAATGAAAACAATACACGGTGCCTGTAAAAAGGAACAGTTAAAAG
TTACTCACACAAAAAAATTGTCATTATGGAGGTACGTCATTTTTCACTGATAAAACAAAT
TAAGCTTCACCAGTTTGTCTGTTCACGAGATGAAAAGGTAATCGCAATGGAGCATTTCCC
GTAAGCTAAAAGAGCACAGAGAGCGCTCGATTTATAGAAGGAAATGCTGGAGCTAAGCTC
AGGTGGCACAAGAGAAGCGTAAAACACCTTTTTCTTTGCAGCTTGAAACAGGGATCTCAC
TCTCCGAGCACCAACACCAACAAACCTGACAAGATATGATGACAGTAAATTCTGATTAAA
TAAAAAGACATGAAGGTGGGATAGGGAGACAGCTGAAGGTAGCAAATTGCAAATGCTTCA
CTAGCTATGACTCATGCATGCCTAATAAATATCATTTTGGTAGTGCTTCGACATAAATCC
AGAATGATCTCAAATTGCAACACATGCAATGGTACAATGCCAAAAGGCCACATTTTCGGA
GGTCATGCAACGAATTGCAACACATAGGCAATTTTTGCAATACGCGGTTAGCACTCTAAG
GTCATCAAAAATACAAGGAAAATATAAGTTCAATATCATATTAGAAGAGATCTTACATTT
CCTCAAATTCAGAACCTGCTCGGTAAAAGAACGGCACACCAGCTTCCCCAGCAATGGCCT
AAATCACAAAGCCAGCTCTAGTAAGGTATGCATTTACCAAGGAACTGCTTGTAGCAAATA
GCTAGAAACGCCTGATAATAGAAAACTTGGTTTTGAAAGGTAAACAAAGAACCTCATTTT
TTTGTATGTACAAACACAAGTACAAAGAACAGCAAGGACCTCACAAGTGTGTGTGTGTGA
GGGGCGGGAGGGGGGGGGGGGTGAGTTTCTTTTCTCGGTTCGAAAAACATGAAGCAGATG
TTCTTCCAGACAAGTTGTACCTTAGCAAGCAGCGTCTTCCCAGTTCCTGGAGCTCCAGTT
AAAAGTATTCCCTACAAAAACACATTTTCAATTATAAAGGTTCTATTGAACCAGTATTTC
ATAAAATATATATTGACCTACAAAGATGTATCAGATATATCCCATACATCAAAGTACATA
GCAGATTGAAAATGTATCTTGCAGATTGATATAGAACAAATTACCTTTGGTAATTTTCCA
CCAAGGCGAGTAAACTTCGTAGGATTCCTTAGATACTCAACAACCTCCTCAAGTTCTTTC
TTTGCATCGTCACAGCCTTTGACATCCTTAAATGTCTTCACATTCTGCATATAAAACGGT
ATAAATGGATCATGTGGAATATACATATGTTTACTCTCATCTTTGCACTGCGCAATTGTA
CCATTGCATACCAAAAGCAAATTAAGCATATACAATAAAAGGAAACACAAAATGCACCCA
GTAATTGTATTTTTGCACAACTGAGAGTGGAACAAGACATCATCAAATCTCACCTTCTCG
GGTGTTACATCCTTATTCAACTCTTTTGCAGAATATGATGAACTGGAACCGACACCAGAT
GCGCCTATTCCACCTAGGCTACCAATATACTTCTGAAGCGCGGCAGCACCCATTACCCTG
GAACAAAATGTGTTGATCACTACAAAAAACTGACATATTAAATGTTCCAAGAGATTAGAG
TCATGACTTGTGGAAGGTTGAGCATACCACATAAATCCAACAGCAACTGTGAACAAGATA
GTCGAGAAAATCTCTTGAGCAAACCGAGTTGATCTACCAGTAGCTTTAGGATCAACCTAA
TGATGGCATACAGATAGGCAAACATTATATTGGGATCATATGGTGAAAGCAATAACTGCC
CCCATGGCACAATGAAAAAGGTCATGAACAATACCATATTGGCATGCTTTGAAGGTTGAG
CGAACTTACCATTACTACATGTAATGGTTGCTTGTCAGATATCCCAGGATTCGAGAAAGG
CTTGTCCTCCCCAGATACACGTTGCTTCAATTCTTGCAACTACTGACATAAATGTATATA
TATGCAGCAACCGAAAGAGTGGGTTACAACATGGTGACTAATGTTTCAGAATATTACAAA
TAAACGAGATAGGAGGGAAATTTATGCTACATTAAAAATATAGGAAAAAAGGGAAGTTCA
AAGCTCTAAGCTTTTGTTGTTCAAAGATGATAGAAATATAATGAAGAACTGAAACAGTGT
TGATTGAGCCGAGTATCTGTTTTCTTGAATAACCTTTAGAAGAACAAAATGGAGTATTTC
AGCACCAGGACATAATGGAACTTCATTAAGTGATGTATTGTTTGAAGTATCACAAGTTCA
CAAGCAGGACAGTTTTCAAGCTGCATCGCTTGTCAAGTGCCATATTGTCAGCAATCTCAC
CAAGTTCATAAGCAGGATAGTTTTCAAGCTGCATCGACTGACTAGGACAACACAAAATCT
TGACTGACATACTCCCTCTGTCCCAAAATAAGTGTCTTAAGTTTGTACTAACTTTAGTAC
AAAGTTGTACTCCCTCCGTCTCAAAATAACTGTCTCAAGCTTAGTACAATTTTATATTAG
AGCTAGTACAAANTTGAGACACTTATTTTGGGACAGAGAGAGTATTAGACTTGAGACACT
TATTTTGGGACGGAGGGAGTACACAATAGGCTTGCAAAGGAAACTTACCAGAGCTGGTAG
GGTTGCTGAACGCCCAGACCGTTCATCTGGTAGGTAATCAGCTATAGCGTTGGTGAGAAT
AAGAGCTCGTAGGTATTCTGCAACCCCCTTGCTATCTACCGCATGACTTCTTTGCTCGAT
TCTTTTGATGACATCCTCTGGGCTGCCAAGATGGAATTTACAAACCACATCATTCTTTAA
AATCTATATAAATAGGACACTGGACCATGCTGCAATGTGCAAAGAAAAACAAAAAGAACA
AGTAACCCATTCCAATTAATTGCTACTCCATTTGTACCTAAATGTAGGACGTTTTGGCAG
TTCAACGTCTTGCATTTAGGAACAGAGGGTGTATTTTAGTACTAGTATCAAAATATAGCA
GGAAAAGTACATTGTACATTGTTCCACATCACATATGAATGACAGCATTATTTAGGTACC
ATCAAACCAAATGCCACTGAATTCGGCTATTTAGCTACAAATTTCATGATTTCCTAGATT
TGAGATTCAGCAAGGCAATGATCCACCAAATGAATTGTCAATCACTGGTCATATTCAGGT
TGAACTAGTGAACGTATTGACCAATGAACTTGATTGTACTAATATTAAATCGGTAAAAAG
GAACATATTTATCAAGGATCCAATCCATTCAACATCAGAAAAGCTAGAATCAATGTCTTG
TTAAAACTTTGTTGCCACCGTGTTATTAAGTAAGTCGATAGTCCAGCCCTATGGATTAGC
AAGTAATCCCCTGATACTCAGCCACCAAGAAACACATTTTCCAAATGTCCCCAAAGCAGC
GCCCATTTGAGTTGACTCGTCAGAAAACAGCAAAGAATTGTTCTCGTCGGCGAAAGGCGC
ACCTAAACTTGTTGAGCTCGTGGAGCAGCGCGCTCTGCTTGGCAGGGTCCTTGGGGTCGG
CGTCGGCGTCATCGATCAAGCGCTGCAGGCGGCGGTCGGGACGCCAGAACGGCCACCAGC
TCATCCAATCGCCAGACACCACCCAGTCGAAAAACCTCTTTACCGCGTCGACCACCGCGG
CCGCGAAAGCCACGGCCCAAACCCTAGCCTTATCCACCAGGTCCTCCAGCTCCTCCTTCC
CGTCGCGGGCAGCGGAGCCCGTCTCGACCTCCGCCTCCGGAGCGGCCGCCCCCCCAGCCG
CGGCGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGCGGGGGGGCGAGGGG
GGGGGGGGGGGGGGGGGCGCGGCGGG