morexGenes - Barley RNA-seq Database

Contig contig_66420
Source Contig contig_66420
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_66420 (6852 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_66420

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74720	4	2139 bp	MLOC_74720.1	Available	Available	LOC_Os02g47210.1, FRAME:+2, EVALUE:0.0, 13102.m05311 protein amino acid permease family protein, putative, expressed
MLOC_74721	1	618 bp	None	Available	Available	None
CDS Structure of MLOC_74720

CDS Structure of MLOC_74721

Contig Sequence (6852 bp)

>contig_66420 6852 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACAATCGCCACACCCGTATCCGCCTCCGGTTGATCGGGAACTGTT
GGAAAGAAAGAACAAAGAGGATCAAGGGAGCTACTGCTTCTGAATAATACTAAGTCGATC
TTAGACCAAATTGCAAAAAATGGAATGACTACTTTCTCCCACCGTTTTAGTGTTTTCCTC
TCGAGATTCGTTATGAGGTTAGGAGTATTAATGTATTACTATATCATCGAAGGCGTGCAT
TGCTGCGCCCATCTATTTTGGCAATAGGTTGATAGGAATTCAATTCATATAAGGTGAGAA
AAAAAGAGAAATACTAAGCTGGACAGGTTATATACATTTTAGTTTCATGTATACTCTCTT
CGTTCCTAAATATAAGTATTTTTAGAGATTTCGATACGGATTAGATACAAATGCATATAG
ACATATTTTAAAGTGTAGATTCATCCATTTTCTCCAGATATTGTCCATATTAAAATCTCT
AAAAGTACTTGTATTTATGAACAGGGGAGTACAATATATGTATGGTCATTTATATCTTAT
GGCTTCATTCAAATGAAAAAGTCTTTTTTTATGTAATAGCCTCTTGCTTACTTATACTCT
TCACTGGGCTACTCTGAAGAAACTTTAAAACATATCTATAAATTAATAGCCTTGATCAAG
GAGCAGTGGCTAACCTTCACTTAATGAAGTAACCACATTAACATGAAGGAAACCACAAGA
GTTATGTAACTTCAGGAAATGGCGAAACATCAATGCACGGATTAACTCGGCCCAAGTCAT
TGGATGGAACCTATGCTTTTCGTGAGTGATGCATTCATAACATGTCGAATAACTTTTGAA
CCTAAGATTTAGACTTGATTTGCTTTATAAGAAGAAAACAACACATGTATGAATCTCTGA
TTAATGATCATCATAATAATTACCACACCGAAGGAAAGCCACACACCTTGAAAAAAACAC
ATGATTATTCTTGTATCAAAAACCAAAGGTTTACACAAATGATTCACCTTTGGTGGTTGA
TGTCATCTTGGATTCACTCGGGTCTTTTCCTATTTCTTGCCAGTTGCAACAATCATAGTA
GAGATGTGTACAGTGTAGCTGGTAAAATCATTTGTACCAAAAGATACATAACTTATTAAA
TAGAGTGTATAACTACATGGAATTAAAATGCAAGAAGGTGCATAAATAAAATATCCAATA
TGCGCAGGAGTTCATGCAATGTTTTAGAGGCAAATCTTAACTTGAATGAGAATAAATAAG
CATTGCTTGACATTTTTATACGATCTAAACCTATATTATCTTCCTTTCACTACTACTTTG
ATTGGTATTTAGTTCAACGCCTAAAAACTTAAATGCTATTGTACTTACGCAGATATTCAG
AAGCAATTGAAAATTAAGAAACATGCATGTGATGTGACCATATACATGTAGTAGTTTCTG
AAGAGCACTCGTTTTGAAATAAAGCTTTTGAATAACCTCTGGTTTTTAAAATTTAAATAA
GAGAATAATCAACAAACTATAGTACTGCCCAGTAAGAAATTTATGGTTCAATATAGCCTT
AACAAGTGATCGATCGTTGGACCAAAATTAGAATTACTAAATAAACCAGTTTAGTTTATA
GGTAATGTATTTACTGTAGTACCCGTGCGTCATCTACATAAGCTGAATGAAAGTTTTACT
ATGCATGATAGAAGCAAATCTGAAAGAACTCCGGGTCGCTATCATCAACAAAATATAGAA
ATTTTACAACGCAAGAGTAACTAATGATCTTCCATCCCAAGAAGATGTGTCCTCGTGAAG
CTTTATACCTAGTTGTAAACCTGGCCTGACCTCTACAGAAACAAAAGAAAAATTAGAGGA
AGATGGATAGGGAATTGGGGATTGAGATGGAGTTGATCGGCAAAAACAGATATACCTAGA
ATAAACTCAGTTTCACACCCTCAGGTTTTCCCTTGTCTCCCTTGCCGTTGATATCCTCTC
TACCATCAGCAGTAGCACCGTTAACTACGTCCTTGTGATGCTGCAATGAGTCCTCCCCTC
TCTTTGGGAGGACCACTCGCAATGAACCATCTTCCCTTGAATGCTCTTTCTTCAACTCTC
AGGGAACACCACAACCTCCTCCGTTTCGAGAATTATGTTCCCAGATTTAATCCTTTGAAC
CTTATAATAAGCATTGCCAACAATTCGCCCTCATCGATGGAAGATCTGTCATCGGTGGTA
CCTGATCCCTCGACTCTATTAAATTGTTTTATAGGAGTAGCAGGGAGAATAAACGGGATA
TCAAACCTTGAAATCGTCAAATCCTTTGATGTTTCGGTCAATCCTCACGATGTCCTCGTT
CCACTAGACATCACTATCAATGGCAAGGTGCTCTTGAAGGCGCCTCCGTGCTAAAATTTG
GTTAGGACATTCCTTCGAGCGTTTAGTCCGATTGAACTTGGATGATCCAGCACGATGGGC
TCCCTGGTAGGCCGGCTATGTCAATCCAGGAATCAATTAGGAGATTTAGGGAGGAAGGAG
CGAGGCTGGCGTGGTCCGATAGATGAGCGATCAAGCAAGATACACGTTACCTCCGCCGTC
TGGCAACCACACATCCGGTCAGTCCTCCATGCCATCGCCACCACATTTCCTCTTCACGCC
CGTCCCTAACGACTCCATGGAGACTGGATGTGGCTGCCCAACTAAGCGATTGTCTGGATA
AGAGAGTATGGTGCCACTGCTACGGGATCAAGAAAAGTAGAGCAGCGGGCGACGGGCGGC
AGCACATCGACCACACCTAGATCGTGAGGGAGGAGGAGGAAGGAAGGGTTTGCTTTTTCT
TTTCTATGGAGCGATCGGCCTAATTGGGCTTTCTGCGGTATGGGGCCTAAATGCACCACA
CGGCTCCAAAATTTCCACCAGAGTAGCTGCCCTTTAGGACAGAGGCCCAGATCACGAACT
GAGTGTAAATGGACGGCTATAAACGACCCAAACGATGACCTGATAACTGAAATCTCTAAT
GGCCTGAGAGGGCAGCGATTAGGCTCAGTTTTACTGTCCTAAATGCTAAAACATAAATGG
GCCAGCCGCTTCGTACCGCTGACACTGGGCCCCACGAGTCACGATACAACGACAGCCATG
ATTTGAGCTGTAAAGACAATTTTTTTTCCGTATTTGAAAATATTTGGCATCAAATTACAC
ATCCTAAACAACTTCATGTACCATCAGTGCATTTACCTTTTATTTATTCAACACATTTCC
GCAGGAACTTAAAAGTAGGGGTGGGCACTATAAAACCGAAAACCGAAAAACCAAACCGAA
CCGAACTGTATTAACCGATTTGTTGGTTTATTTGGTGGTTTGTTTTTTGGTCCGGTGGGA
AATTTTAAGGTTGTTCGATGTTTTGTTTTTGTTCGGTTTTTGGTGCCTAGAAACTGAATA
GACCGAACAAACCAATATGTGGGATACCCCATGTAATACCTTGTTTTCGTAAGTGCAACA
GTATGAAGACATCACACATTTCTTCGCACATAATATATTTCACATTCCATGTGCTTTTTC
TACTTAATTATGGTTACTAGTCTGCTTGACCGAATGAATTATAGAATGATATTAAGGTTT
CTAGAACTTATGATTATCTTTTTGCATATTATACAATCCAAATGAGTTCTCTCGAGTCAT
TACACTTATATTGACAAGTGCATGAATTTTGGTTTTTCGGTTAACCGAACAAACCGAACT
GATATATTATGATTAATATGGTTCGGTTTTTAAATTTTAAATGATTATTTCAATTTCTAT
TTCTTCGAAACCAAAATTACATAGAACTGAATAAACCGAACCGTATTAATCATATAAACC
GAACGCCCAGCCCTACTTAAAAGACAATAGTCCAAACAAATCTGGTCCTTTTCTCCAGAA
AAGGAATAAAACCCAATCCAGTTGTCCCTTGCTGTACGGGCTGCATTTCCATTACCAGCA
TACAAGCTTGCGCTTAATCTGGGGACGGACTGGAAGGATCCTTCACTCAATCAAAGCCAC
CTCTTCGCCAAGCTCTCCGCGGCATCAATACATTCCACGTCGCTCTCCAGGAACAATAAT
TGGGACTCGAGAGGAACCCGTAGCCAGACGGGGAGGCGCAGGAATCGCGAATCGATGGGC
AGCGTCGAGAGGTCGGAGGTGGCGCTATCCAGCCTTCCGCCGCCGCAGCCACCGCCGCCG
CCGGTGGCGGCGCCCGCAGGAGCAGGCTCTGCGGACGCAGGGCAAGAGGTGAGCTCCCCC
AACCTCCTCTCCACCTCATCCTGCATCTTGTCGTTGTCGTAGCGGTGGCGCGTCGATTTG
GCTGCCCCGCCATCGCGCGGCGCACGCAAGCGGAGATTCGATTCTGCGTGCGAGAGCAGG
GAATTTTTTCTCGAGCGGAGGAACCTTGGAGCAGACGTGGAGCCCACTGCAATCGGCCAC
GACGGCCCATTCAGCTCCAGCCCTGAACAGCTCCAGCCCCTGGTGGGTTGCAATTGGCAA
GCCCACTGAAATCCTATCCAGCCTTGTAGAGCTGTAGTATACGTGTTAACGTGTATAGGC
GGAGCTAGCGACGTGGCGGTACGTTCGGCGACAGATGTTACCGAATGCCGATGAGCCGGA
CAGGGACAGCGCTCGCCGCCGTCTGCGTAGGCGAGCGGCAAAATGTCCAACTCCACCGAA
GCTGCACAGTGCACAGCAATCAGTTCAGATATCGTAGCTCCATCACAGCATTTGAATTGA
TACGGCGTCCATCCTTCTTTCTCTTTTGCGAATGAGCATTTGATTTGATACTGCATCTGC
ATTTGCTATCCTGTCAGTTGATCGCTTGTTGCCACAACTCAACACTTCTCATGCTCTAAT
GCTGTCGTCTGAAGAAGTTTACGTCTTCTTTTCTCCAGCAGAAGCCCGCCCAGAACGGCG
GACCGGCGACCGGCGCCGCACCGGCGATGGGCGAGGAAGGCACGGAGTACCGGGGCCTCC
CTGGCGGCGCGCCAGCGCCATCGCCGGCGTCGCTCTCGATCGTCCCGCTCATCTTCATCA
TCTTCTACGAGGTCTCCGGCGGGCCGTTCGGTATCGAGGACAGCGTGGGCGCGGCGGGGC
CGCTCCTCGCCATCGCGGGCTTCCTTGCCCTCCCCGTCATCTGGAGCGTCCCGGAGGCCC
TCATCACGGCGGAGCTGGGCACCATGTTCCCGGAGAACAGCGGCTACGTCGTGTGGGTGG
CCTCGGCGCTCGGCCCCTACTGGGGGTTCCAGCAGGGCTGGATGAAGTGGCTCAGCGGCG
TCATCGACAACGCTCTCTACCCCGTCCTCTTCCTGGACTACCTCAAGTCCGGCGTCCCGG
CGCTGGGCGGAGGCGCGCCGAGGACTGTCGCCGTCCTTGGGTTGACCGCGCTGCTCACGC
TCCTCAACTACCGCGGGCTCACCGTCGTTGGGTGGGCTGCCATCTGCCTCGGGGTCTTCT
CCCTCCTGCCTTTCCTGGTCATGGGCTTCATCTCCATCCCCAAGCTCCGGCCGGCGAGGT
GGCTCGAGGTCGATCTCCACAACGTCGACTGGAACCTGTACCTGAACACTCTGTTCTGGA
ACCTCAACTACTGGGACTCGATCAGCACGTTATCCGGCGAGATCAAGAACACTGCAAAGA
CTCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTCGTCGGTTACCTGTACCCTC
TCCTCGCCGGGACCGGCGCGGTGCCTCTGGACAGGGGGCAGTGGACCGACGGCTACTTCG
CGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGATGCAGGCGGCGGCGG
CGATGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCATACCAGCTCCTGG
GCATGGCGGAGCGGGGCATGCTGCCGGCCTTCTTCGCGACCCGGTCGCGGTACGGAACCC
CGCTGGTCGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTGTCGACGATGAGCTTCC
AGGAAATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAGTTCCTCT
CGTTCGTCCTGCTGCGGGTGAGGCGGCCCGACGCCCCGCGGCCGTACAGGGTGCCGCTGG
GCACAGCCGGATGCGTGGTCATGCTGGTGCCCGCGACGGCGCTGATCGTGGCGGTGCTCG
CGCTGTCGACGCTGAAGGTGGCGCTGGTGAGCCTCGGTGCCCTGGCTATCGGGCTCGTGC
TGCAGCCTCTGCTGAAGTTCGTGGAGAAGAAGCAGTGGCTCAGGTTCTCCGTCAACTCGG
ACCTCCCCGGCATTGACGTCAACCACCAGCCTGCCGCTCCCGACGACCCGTTGCTCGTGT
AGGGGCGAAAAATCGGCTAAACTTTTGCCTCGGGAGCAGGTGCATTCTCGCGTCAGTTTG
CGCTTGTTGAGTTTTGACTGGCGATGTACAAATTTCGAGATCGAGTAAACCAAATAGTCT
CAAGTAAAGTTAAAAAAAGAAAAAGAAAAATAGTCGCAAGTTGATGGTTACAATTTGGAA
GGGAGCACCGGAAGGGGCGATCATTACGCGTTTCATTCTCTTGACAACTGGTACATGACG
TGGTTACGTTATACTCCATCCGTTTACAAATACTACACCAAAAATTTTAATATGGACATT
TTGATATTAAATATATGTCTTTTATACACTACGTACGGATGCATATAAACATTTTGATCC
ATATGTTATTTATATTCGAAAATTTAAAAAGATTTATAATTAGGAATGGAGGAAGTAGTC
AAAATAGAATCAAATATTCCATAATGTACAAATAAACATGGTAGACACAGAAAAGGTAAA
AAAAGAAAAATA