Map Locations of contig_66360 (6312 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_66360

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74695 1 385 bp MLOC_74695.1 Available Available None
MLOC_74696 1 386 bp None Available Available None





CDS Structure of MLOC_74695






CDS Structure of MLOC_74696






Contig Sequence (6312 bp)

>contig_66360 6312 assembly3_WGSMorex_rbca.fasta
CGCTGTTGACCGACACCTGCTTAGTTGGGTCAAGGTGAGCGGCCCCGACACCACCATCGC
CGTTCGGCGCCCCCGCCCCAGGCGGTTGCTTCCGCTGCTGGCCCCCGCCCTCACCCCCTC
CAGCGCTAGTTGCCCCCGTCATCGCCTCCGCCGTCTCACTTGTCGTGGAAGACCTAGAAA
TTTTGGCTAAGTGTTGGCTCTGTCCTATCCTCGGAATAGGTCCCACTTGTCAATGACTTA
GATTTGGCAAGAGACAACCGCAGTTTTATATAATATACAGTCATTTCGGTAGATGGGCAG
CAATCCCTCTCTAGCCCAGTGGTAGTCAACAAGCAGCCACAACCCAGTGGTCGTGGGTTC
GAGTCCACGCTCGGGTAAAAAAAATTACCCAACGAATTTTGCGCTCGCGTGTGCTTCTGC
TGTCAAATGGGTCCCACCTGTCAGTGTGTGATCTTTGTTTAACAAGAAGTAAGCAAAAAT
GACAGGTAAACTGAGGTTGTTGCCTAACCATCCTAATGCATTCGAACTAATTAGTAACAA
GAGGTGGCCGGTGCTGTCCGCTTTACGACAATTTCTAGTAAGGAAGTTATGACATTTCTG
ATGAAAATGGTCGTTAGTTTTTAGGGTTAGGACCCCTCCGGACATCTTACAACCAATTGG
TCTCAAATGGTCGTAGATTTACGACCATTTCTACTTGCGTCATTGCTAGAAGGTCGCTAG
TTGACATATTTCTTCTAGTGGATTACCATAATGCTCGTCATATACAAGGATTAATCCTGC
AATGACGAATCATGTGATCATCCAAATGACGGAATTTGAGATGAAGAATTTGGGTAAAAC
CTCTCGCACATTCACTCATACATTATGGTACACATGTCGTCATTATCTAGATTATACTAG
ACAAAATAGATTGTGGGGATGTCTTACCCATCCATAATTTCCATGGTTATTCGTTCTCTA
GACGTAGAGAAAATTTCATTTAGACTGCGAGGAGATGGAAACAAGATTTTAGGACCTAAA
GTTCCATATCCTAGTGCCATTGGACCCACCAAACACAATTGGTTGGGACTCAAGAATATA
TTTTCATATCTCCAAGGCATCAAACATCTTGTCCTAATCTTTCAGTTTTAGAGAAATCTG
GACACCCGATATTATTGGATACGTTGATTAGATCCCTACCATGTTAGATCGTAGACAAGC
TATGTGTTCCTACTAGGTGTCGTAGCCATCCCATGAAAGTCTTCAAAACAAATCTTATTA
GCTACATCCACCAACCATTATCTCAAAGATAATGTTGCTTGTGTTCCCCGGATGCAAACA
TGTTACATAATAAGCAATATCTCTATATTTCATATATTGCAATTCAAATCATGTGGCTGA
TTTGTTCACCAAGTCTCTACCAACTTCTACATTCTAGAAATATGTTCACTGAATTGGTAT
GTGACGGCTTCGGAATTTGCAAGAATTAGGGGAGTATCTTCCTGAATTTTTCATGTTCAG
AGCATCATATTATAATATTTTTCCCTGCATGAGTTTACTGTACATGTTCTCATAAAGATT
TTTCATGAGGTAATATCAACATGAAATCATATGTCATATTTTTTGTTTTCCCCAACTGGG
GTTTTTAGGGATGTATACACAACATATTTATTGTCCTCTAAACTGTATGGATTTTATAAT
ATTGAGTTAAAGAGACAATTATTATGATATGTCATATTATTTTCTCCTTATATTTTTCCC
ACTGCATTTTAAAGGAGTTTCCAATGGCATATCAGATCACACTCTTTTCCCTTATGTGAT
TTCTCTTGAAGTTTCTCATAAAAGGTTTTAACAAGGCAACATATGCAATAATTTCTATTT
TTCTCACTTGGGTTTTTTTAAACGAAAGTATACAATGAACATTTATTGGTCTCCAAACTC
ACAAATAAGTTTTCTCCTTGTTCAAAGGTTTTCCTCATATGTGTTATCAAGGAGATACTA
ATCATAATATGTTGCATCATATTCTCCTTATTTTTTACCCATCAGGTTTAAAGAAATTTT
AGCAACATATCAGCACCATTCTCCTCATATTTTTTCCATAAGGTTTTTGGGAAGACTCAA
GATTGTACAAAGGATTTATCAAGATGGAAGATGAATATACAAGACACCTTCAGTGATGTT
CAAGAAGCCTTTAGTGGTGATCAGGAAGCGGTGTTGTATAAGGGGGTGTTAGGAATAAAT
TATCACATGTCTATTTTTAATTAGCACATGCTAATTAATGGATCATCATTAGCGAAAGGT
GTGTCCAACCCCGAAGAGTTATGTCCCTTCTCTCTCTTTATTGTCAATAGGCATCTGTTT
TGGACGGATGTCTCCGAACAAACACCCTTTATTTTCATCTTTTCGAGATGTATATATACT
TGAGTATCAATAAAAACAAAGACTTATCGTTCATTTACTTTCAATCAATCTTGTTCTACT
TTAACACAACTCACTAGCAATTTTGTGTGTCGGGCCACTTCGATCTTGCGGTATACCCCA
GCTGTCCTGGTATGTGGGGCATGCTATGGTTGTTTAAAAATATTAAAATTATAAAATGCT
TTCTAGTATGACTTGGTTTTATTAAGCACGCAAACATAATAAATTTGAATCGACGTTCTT
GTACCACCGAAAGTTCACACCAATCAGCGAACTACGCATTTCCATTAAAGTTGTAGAGGG
TGCTGCAGTAGTAAATATGTAGAGGGGAGGAGACGCATCAAGACAAGAGGGCAGTGTGGT
GCACTAATCCTACTACGTAGTCCCTGTTGGTTGGTAAATGAGATGGTCAGGTCTGTTGCA
ATTCTTTACGTCGTCTCTGTTGGTTGGTGTATTCTCCTGTGTGTGGCATGGTGTTTGTGA
TTAGAGAGTTCCCATGATTATCTGTCGCTCTGTTACGACTTGGCATAATACTCCTACATG
CACACAAAGACGTGTCGGTTGCAGCTAGCCATCGGGACTGACATGCCGTCCTACCGAATG
TTTAAGGAGGTCGACAGTAGTTTGGTGCAGCTAGTCAACGGGACTGACATGTTAAGCAGC
GCGTGTATGCGTCTCGCTTCGGCCGAAATCACTGTTTTAACATTTTTATTAATCTTTGTC
ACAAACTGAACTCAACATAAAAGTGTTTTATGATCTAATCTTTTTGATAACATCATAGTC
AATCCAACATAGAAACGCCAAGCTAGATAGCGTTTCTGCCCTTGTCCACTGTCAGGCCGA
CCATGCGTATGTGACAAGCCAGAAACGTCGAGCTAGACCCCGTTTCTATATAGGGCGGCA
ACGTCAAAGGCCTTGCGTTTCAAAACAACATAGAAACGTCAAGGCTTTTGGCGTTGCTGC
CCTACATAGAAACGCCAGGGTCAGTGACGTTTCCAGAAACGAGATCTAGCTCGGCGTTTC
TAACCTGTTACCTACGCGTACTCGTCATGGCAGTGGACCAGAGCAAAAATGCTATCTAGC
TCGGATTTCTATGTCGGGCAGTAACGTCACGGGCTATGATGTTGCCAAAAAGATCAGAAC
GTGAAATACTTTTATATCAAGTTCAGATTGTGACAAAAATCGCTGAGAAGGTTAGAATAG
CGATTTTGTCTGCCTTTGTGGGCCATCTCCTAGTGTCGTGGGAATGACCCTAACAATAGT
ACCTAAGGGTATGAATGAAGGGGCAAAGTCTAACTAGACGCAGTGGATGCACTCGGATGT
ACGAGTTTAGACCCCACTCGAAAGTGGTAACAGCCATACGTCTCGAGCCCTGAGGCTGGT
ATTTTCTTATGGGGTGTAAAAGATTACAAAGTGTTGAACCCTTGAGCTAGAGCGAGAAGT
GGCTTATATAGTGCATACCATGACCGGCCGAGCTTCATTACAAGGCAATTAATGCAAATA
AACGAAAAAGTTACTAGAAACGACAGCTTTAATTATCGGCGTTACTAGTAACGTGAGTCT
TCACTGCTCTTCATGCGATGGGTTAAGTCCTTAGCCGTTTGCAGCCTCTTCGGTGCCTTT
TCCTCGCTGAGGTCCGAGTGTCAAGATGTATCCGACTCGCACGAGAGGATCCGAGTGACT
CCAGGCAGACCGAGTGACGGTTGCTGAACCGAGTGAGGTCGAGGCAGCCTTGGTGACTTT
AAGGATACTAATGTCCGTAAGGGTCCTAGGTAGGCCCAAAGAGGCAGGTCCGTAGGCCTA
CCCCTAATGTACAACACGAGCAGTAGCCCCCGAATCAATTGAGGTTTTGCAGATCGACTG
AATGACTTCCTTCAATGTCTCCGACGCTTTGAAGATTCTTGGGATGTAGCTCGGGGCTGC
GTCATTCGGACCCTCGGCAAACCTCCACGGATTTAAGAGTGACCAATTTCGACTGTCCAG
CCATACAGGTACTTCAGCAGTCGGCAGTGACAGATTATCTTTTGGAAAGATAGATCCCAT
GAGTTCGATGGACGAGAGCTTTGTACTCCGCGTGCTCAATCGGTGAGTTGGGACAGATCT
TAACTCGTGTCGAGGTAAGGACGATCAGGTCGTCGTCATCAATTTCCGGACTGATCGGGA
TTCCGTAGGGGATCGTGCGAAAAGATCATTCGGCATGCTTTGTCATACGACGTGTACACG
GGATCCATTCGGGATACAAGGTGGGACAGATTTTTCGTAACTTTTGAAATTGAGGGAGCA
CGCCCGCGGTCGACGGTTACGCGGAGACGCGGGTAGTGGAAATAGTGAGAGAAAAGATTA
ATCGTATGAGCTAATGTATCATGATCGTCATTACGTGCATTTCGGAACAGAACAGGGGAG
GAGCTGGGGATCAAAAGAGTGAACTAGTACTACAGTGTTATCTCGGCATTTTGCAATGCT
CTGACGCATGTCAACTAGTAAGCGCCATAAGGAAAAGACGAGTCATGGCACATGAACCAG
GGTCGTACAAAATTAAAAACTAGCTGTTATTAACTCAAGATCTCTGGAAAGGTACTAAGA
TGGAGAAGTTGGCAACATTATTTCATTTCATACATGATAAGATAATTAGTGCTTGCTCGC
AGTAAACATCGCACTGCAAGCATGGCCTCGCCTGATCGCCCCAATTTCAGCAGACAAGTT
CGGGGAGGCGTATAGAACTTGCTGCGCATTATTTGATCTACAGCCTAATTAGTGGAAGGA
GGTGTTCTTGAGGTGTGGCGGGGCGTTGTCAAAGGAGTGCTTCCTGGCCATGGAGACGAT
TGTCTTGTCGGCGACGATGAAATAGGCCATCCCGGCGACGGTGGAGATGATGAGCGCCTG
CCCGGCCGGGTTCAGGTGCGCCTTTGCCCACGGCAGCATCCTCACGCTCGCCAGCTGAAA
TTACAGGTAAGAGGTAACACATTCGTGCTCCGCAGGGATATCTCGAAGAAGGCAAGAACT
AAATGGCTAGCTACTAACCGTGGGGACTGCGGCTGCGACGGTGGCGACGGCCGCGGCCTT
GGCTCCCGCCATGGCAGCCTCTGCAACACCGACAGGTTAATGACAATCAAGTTTCAGTGG
ACAGATACATTACAGAAGCTGCAATTAATGCACGACGGAATGGTATCTATACGAGCATTG
CTGGTTACCTCTGGAGCAACGCTTGGCTGCAGCGAGCCTCTGGTCCAGGTAGGCGCGGGT
CACCGTAGACATTTTCGTGGGAGTGGCAGCTTGGTGGCACGAGACCGGAAGGAAGTGAAC
TAGAAGTAGAGCAGCAGCAGTGTGCTTTTTATGTGACCGTCTGAGAGTGAGATGAGATGG
ATAGGAGGTGTGCTCCGATTCGGCCGAGTTTATGTAGGCTGCAGGAAACCGGCAACCAGC
GTGCGCACAAGAAGACGATAGATACAGTGGGAAGCGAGACCGTGGTTTTGGCACTTTGGC
AGGCGAGCTAGCAATACCGGCGGCGTGCTGGGTGGTCGGCGCTGCGGCAGAACACAGGTG
GCGCTGCCTCGTTGGTCATTTAAAAACCATCTCACGTGCGCCGCACTCTTCTGCAACTGG
ATAACAGCAGGCAATGCATCAATCCATCGGGGTTGGCAGGGAATCATAGGATAACAAATA
TAGGAGCATGTGCATGAGTGGGGTGTCAATTAAAGCATCACTTGTAGTGTTCTTAAATCT
TCAAATCCTTAAAATAAATCATTTTTTACGGATTGAAACGAAAAAAAGCAAAGAATAGAA
CCCCTAAACCCTTAAAAAAAAATAAGGATTGAACCCGGGTTGCCCTCTCAATCTCTAAAA
GTGAGGATTGAAGAGGGGAACCCATCCCTAGCCCGCACTCCTACCGGTCGACGCGCGGGA
GGGAAATTTCCC