morexGenes - Barley RNA-seq Database

Contig contig_66124

Source Contig contig_66124

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_66124 (4633 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_66124

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74566	3	1587 bp	MLOC_74566.1	Not available	Available	None
MLOC_74567	4	2119 bp	MLOC_74567.2	Available	Available	LOC_Os02g39550.3, FRAME:-3, EVALUE:4e-20, 13102.m04379 protein calcium-binding mitochondrial protein anon-60Da, putative, expressed

CDS Structure of MLOC_74566

CDS Structure of MLOC_74567

Contig Sequence (4633 bp)

>contig_66124 4633 assembly3_WGSMorex_rbca.fasta
CCCAGTGGAAGTTGACAAATTCAGGATGCAGTTTATGACAAAGAGATCCATTCATACAGT
CTAATTTAGGATACGGTTTATGACGAAGAAATTCGTTTGTTCTGTTTAGTATCTCCAACT
AACAATAGAATGAAACTAAACTAGGTCTAGTAGACTACTAGGCCAAAAACTGGTACCACG
TACTGTCACCGGGTTACCGGAACAACTGGTATAAGGCCGAATACAAGGCCAATTAAACCA
TATACTTGCTACAAAGTAGAAACCCATGGGTAACAGTTACCTTGTATCACATAACTTGCC
AACAGCAGGCAATCAACAATACTTATTTCTTCAAAGGTTGAGAAAACTATTTAAGATGTT
ACCATACCCTAAGAACGAAGGAAAAGAAGTAAATCATTATCTGACAAAATTGTGCCCAAG
TAATTTAACCGTTTCAGCTTCTCAAGCTAGTCATCGATAGCCGACGAAGTCAGGGAAAAA
AGTGATTACCTTAAACAGCGAACCAGAGCAAATATAGTGTACCGATAGAACCAGAGTGTT
ACGATCTTTGACTTTTCATACATGGAAGAGATACATACCTTGTCAATCAGTGCTCACGAG
ACTTTTTCCTCTGAAGCAACCTCGGTGGTGTCGTCTGACTCCTCTCTAGCAGCCATATAT
GCCTTCTTAGCTTCTTCTGCCCCCTCTGTGTATTATCTTTCAAGCATGGAGTTATATAGT
TTTATCTGCATTCCTCAACAATTAAGTACTACTCAGACTCCACAGTAAAACAGTTCAAAC
ATGCAACAAACAAAAAAATGCCGTATGGTAATTGTCCCTCTGACCCCACTTCAAAAATTC
ACATCGTACCTCCTTGTTGACAAGGCTCAGGAACTCTTGATGCTCCTTGCTAACAGACTG
CAATGTACTCCCTCCGTCCCGAAATATCTGTCGCAGGTGACAGAATTTTTGAACTAAGCA
CATTTTTTCATTTACACCCGTTACATTTTAAATAGCTAGCAATCCAGTACAGCAGTGTCG
TGATCCCCGCGATCCCCTTTCCCATGCCGTGATCCCAGCTCTTGCCCGCGATTCCAGCTC
GCCGTGATCCCAGCTCTTGCCCGCGATTCCAGCTCGCCGTGATCTCCTCACCTGCCCACG
ATCCCACCTCCCCGTGATCTCCGCACCTGCCCACGATCCCACCTCCCCATGATCTCCGCA
CTTGCCCGCGATCCACCCACGATCTCAATCCTCTCGTGAGCTTTGTGGTGCAGATCTCCT
GCTCCAGGCTTTCCGCTAGCGGCCACCGGAGCTCCTGCTCGAGGCCCTCCGCCCGTGCCG
GAGCTACTGCTCGAGGCCCTCTGCCGCTGCCGGCCGAAGCTCCTGCTCCAGGCCCCTCGC
CGTCGGCCCGCTTCCGTCCCTCTGCTCTAGACGCGTCGCCTCGCCAAGCTCCTGGACCAG
TGCCTGGCCGAGCTCCAGCGCCTCGCGGAGCTCCTTGACCAGCATGACTAGCCGAGCTGC
AGCTCCTCGACCAGCACCTAGTCGACCTCCGGTGCCTCGAGGAGCTCCTTGACCAGCACC
TAGGCCGAGCTGCAGCGCCTCACCAATTTCCTCGTCCGGTGCCTTGCCAAGCTCCTCATC
CGGCACCTGCTCCTCATCCGGTGCCTCGCCGAGCTCCTCGTCCGGCAGAAACTGAAGAAC
AAGAACCTCAAAAAAATGAATCTGAAGAACAGTGTTGAACCAACAATAACCTAAAGAAAG
TCGTAATTCAGGTGAGACTGCTGAAAGTACACGTTTACGAATGTCATGTTTTGATTCTTG
GATCATGCATATATTCTGCCATTCCAACTCAATTTAGACTAATGCAGTTTTTTTGGCTTG
AACGATTTTAAAGTGTTGATAGAAATAGCATTGGGAAGAACTGAAAGATTATACAGGTTC
ACTTAATTTTCCTGGTCTTTTCAAGCAAGCATGTTGTCGCCAGCTTAACTATCAACTGAT
CCTTTCAGTAAGTGATCATGCAAGAAGACAATTAACTTTAGTACCTTGATCAAAGAACAA
GGTGGTCGATGATAGCCTGCAGGACAACTGGGATTGGTTCTATATGACCTGCACACAAAG
GTCAAGAGAAGAAGACATGTCTTAGTTACTGCTTTCGTACCTGCTAGTATTATGAAATTT
AGCAACCGCCGTCAGCACAACACGAAGGATGATGAAATTTTCATCTGGTCGAAAGTTGAT
GCATGTATTTCCAGCTAGTATGCACATCTTGAAAGCAAACAGATTAAGTTGTTTATTCAG
TTAGATTGTTCACTTCAGGTCCAAGAAAGGGACTCCCCTCTTGGCACCTTCGTTTTCTCT
CTCGGAGAGCAGAGCAGTTCCCACGCATAGGGAAATGAAAATGTCACCTTATATAGTGTC
CCGAATCCACCTCGGCCGACTTTATTGTTGTTGTTGAAGTTGTAAGTTGCTGATTCAACT
GCGTATAGGAGAAGAGCCTTACGTTCTTCTCGGCTAAAATGCCTGAAAGCGGCAACATTT
GGCAAGGATGTGTCGTTAATTATTTGTCCACACTTTTGTTGAAGGATGATAAGTAAAGTG
TAAAAATGGACATTTAGTTTCAGCATATCTGTCATTGTGTGGGAACAGAAAACTGATGGA
AGAATACTGCATGAAGGGTTGAACGCATCACAAAGTCATAACAATAAATCTGTAAACTCT
GTCGGACGACGGTGCAGTAAATTTTGCAACGCAGAGAGAAGTTTTACCACTTATCCTGGT
ATTGGAGTAAAGATTCTCCTCTTGGGAGGCAACACCAGCTCATTATCCTCGGTCTATTTC
AATTGTGAACTGAAATTGCTAATATAAGTCGTTGATGCATGTCCTTTTACAGTAATCTAC
TCATGTCCTTTTTGAATTCCTTAACTTAACTGAATGTTAATTTTTTGTTAGGAAATCGCC
ATGGATATAGCAGATCTGAACGTGACTCCTCCAAAAGAGGAGGATTGAGTACCTGAAAAT
CAAGAGGAGGATCGATTCATCGACATGGATATGGCAGATCTAAACTTGACTCCTCCACAA
GAGGAGGATGGAGTACCTGAAAATCAAGAGGAGGATGCAACAGGTAAATACTCCAACAAT
ATGACTGAATTTTTAGTGAGTGTTAACTGAATTTTTAGTCAGTGCTAGCTAGTTGACGAT
TTACTCCTACTTCAGCAAGAGTACTCCTTGCAAATCACATTACTCTAGAGCAAATAACGG
TACCCCTACTCTAATCAGCTGGGAGTACAAATAACAGTAGTCTAGAGCAAAAACTACAGC
TTTATCCTGTTTTCTGAATGAATTACTCCCACAGCTGCAGAGTACTCCTTGCAAACAACA
ACACTCTACAGCAAGTCACAGTATTACTCACACACAAATGGTTGCTGTCATCACAATGCT
CCTTGCAAGGAGAATGTAGTCACTAAAGTAACTAAAATTTCGAACTCTGAAGTAACATCA
GTACAGTAACTGAATTTTTACTTATGCTAATGGATTACAGTGCTAACTAAACCTCCTTAC
ATCACTCCTAACATGACGCAGGTACGACGAACATGCCGCAGGTACAAACACATGATTCTG
CGTGAGGAAAGAAGGGAATGGATCATCACCTGTGATGGACGCTTGGAGCCAAGGCGGGAT
ATGGACGCGGGCTTGGCCTCGTGCTTCATTTATCAGGTTGCTTCAGCTGGCGCAGAGGTC
AGGTCAGGTCTCTGCCATCCATCCATCCATCCATCCTGGAGTGGATTCATTCAGAGGTCA
GGTCAGGTCTCTTGCTCAGACTCTCATTCTGCTACATCAAATCATTCATGCTCAGACATA
CCGAGGGCCACCACGACGATGAGCGCCTGCGCTGGTGCAGGCACCATCTTGTGCTGGTCG
CCGTCCAGATCCTGCGCATCCGGCCTCGCAGCCACCGGATCGAGCCTCTCCGACGCCGGA
TCCGGCGAATTCGTCGTCGTTTGGACCGAAAGGTCGAACCTTTACAGCAAGGTGGAGGGG
AGGGAAGGTGCTGCGGCCAGGCGAGGGGGCAGCGAGGAGCGGCGAAGGGCGGCGAGGCCA
GGGAGCAGTGAGGGAGCGGCGAGGCAAGGGGGACGGCGAGGCGAGGGAGCGGTGAGGGGC
AGCGAGGCGAGGGAGCGGTGAGGGGCGGCGAGGCGAGGCAGAGAGAGTGGGTGCGGTTGT
GGGTGAGTGGAGCGCGGGTTCAATACGAAAGTAGTTGAGGGAGTTTTTGCAAAATGGCCA
TCGTGACAGAGGCCCTCTTATCTAGGGGTTGAGTTAGCTTCTACTACTACCTCTTTTCCC
ATTTAGGGCATCTCCAACAGTTTGTTGGTTAACTTGTTGGTAAAATATGCCATGTCATCA
GCCAACACCTTAACATACAACTACTCCAATGGGTTGTATCTAGTTTGTCCAAAAAGATGT
GAGGTAATAAATAAGGTGCTCTCTCATTCTACATTGGAGCTTGTGCAAGGATGTTGGTTA
ATTTACATACAACCCTACTCTCTTTCCTCATTTATTGCAAGACACATCATCAAAAATCCT
ATGTGTCAAAATTACCAACAACTATCTTACAACCATTGGAGATGCCCTTATAAGGCTTGC
GCGTATTCCTAGA