morexGenes - Barley RNA-seq Database

Contig contig_6608

Source Contig contig_6608

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_6608 (4452 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_6608

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74552	2	1993 bp	MLOC_74552.2	Available	Available	LOC_Os11g41890.1, FRAME:-2, EVALUE:0.0, 13111.m04161 protein RNA recognition motif containing protein, putative, expressed

CDS Structure of MLOC_74552

Contig Sequence (4452 bp)

>contig_6608 4452 assembly3_WGSMorex_rbca.fasta
GGGGGGGCAGCGCCGCCGTACAACTGAACACTCTTCAGACATATATCCCGCAATCTTACT
TCACATCTCAAACAAGAAAAAACCAGGGTTGCCAAAACCTAAACTCGCTGTAGAAATCCG
AAACCACAATCTCAAACCTTACATATGCAAATACGCTTAAATGATCTTCCAAGGATATAT
ATCTGATCTCTTTGACCAACTCCCTGGTTAGCTCTATTAACTAACCCATGCCTTTTAATC
ATGTGAAGTTCAAAATTTGCACCTCATGCACCTGCGGTTCTCTCCTCAACCTATTATGAA
TTGCTGTATGCAAAAAAGATTCCTAGGCGGCGTCATTCCTGCACAAAGCAAAACAGATAA
GTTGTAGCATAATGACAAAAGTAAAGCAAGGGAAAAAAAGCATAAACAAGTTGATTCAAT
GGTGTCTTTTAGATCTCAGCAGTGTTAAGTGTCATCCAGAACAATCAAATATTGATGTCC
ACAGATTTGAACTGTCCAAATGCTACCCAGCATATACTTAACAATCTACATCATTTGATA
TTTGAATAGTATGAGCAAGCCAAAATGGATTTACTATACATAATGCCTTGGTAATGGATG
GCATAAGTATTACAGTAACAATTAAATTTGGAAATACACAATATAAATTGGTTCAGCTAT
TAAAATTAAGTCCTTGGACCATATTTTAGCTTAAGTCATATAAAGAAGCAAAGATTGGTC
TATTGAAAAAAAAAACGACTTATAAATTCTTTCGTACACCTTGTTGAATGTATTACTGGA
CTAATATGTTTCGTTTAAGTAAATATGAGGTGCATCAATTCTTTCATATGGTCTCATGGC
TGCAGTTCATGCATGACCAATATTTCAATGTGGATTAAATAATTTGAGGTGTAGGTTAAG
TTCACAGATGAGAAATGTTTGAATGTGAAAAACAGTAATCAAGTTTCTAGGACTAGACAA
TATTACAGTTCACAGTAGCACAAAGAAAAAGAGGGCAACAATGGATTTAGCTCTTGTTAA
TACTGCAAGCTTATCATACTACTTTAATACCATCTTCATAGGTGCATGTTCAAAATGAAT
CCATACCATAAGATGGCAAAAGTTTTCGAATCCAATCAACTTATGTGTTCATTTCATAAC
AATTTGCAATATCCATCATAGACAACCATGAACCATTAAAATCATTTTCACGTAACAACT
GGAACACGAAGAACAGACAATTTGCAATATCCATCATATACAATCATGAATCATCAAAAT
CAGCCTAATGTAACAATTGGGACATGAAGTAGATAGACACTAGATAACAATTTTAATGGA
TGCTAAAGACATCTTTTTAGTTGATAATGACAGTAAGTTCTGTATCATGGTGCTACTAGG
TTCAAATGATCGATGCCTGCCTAGATTTCATGGACATGCAAATGTGCCAACTACATCTAT
GCATTATCCTGGGCGAACCAAGGCAACTGAATATATTTTGTATATGAAACTTGAGCATTA
GGGATGAAATTTGACGCAGGGGATACGACATATTTGAAGCTACATTGTCTAAACATTAGT
ACCATCAGTGCAAACTTTCAAATTTGATGGTCTTTATCTGATGCTGCTAGTACATGAACT
AGTACTTCAACATTTGCAAACTATAAAAAAGAAAAGCACAAGGATAATACAAAGAAGAAA
ATATCTAACCTCTATCTGTTAATGTCCCATGTAACCCGCTGAGCTCTTTGCTGTAACATC
TGAAGCTGCATTCCCCAGCCCATATCCAAATGGGCTGGTTCCATCAAGCTCGGATCCAGA
TCTCCAAGTTGTGTCTCCATATATGGAGCCGCCACCAGCCGCTGACGAATCTCCAAAGTT
CCTCCCATATCCATTGCTTGACTGGTTGAGTGAAGCATTGACGCCACCTGATCCAGTGTT
CCTTCCATAAGCACCGGGACTCAGATTGAAGTTGTTTTCAGTCGATCCATAACCAAAGTT
CCCACTGCCATAGCCCGAGCCAGCGTTAGCACCTTGAGCAGGCACAGAAGGGGTTCCCCA
GTTCACATTGTTATTCCCAATTCCACCAAGCCCCCCATTTGCAGATGACATGAAGGAATT
AGAGTTTGCAGAGTTGGAAGAGTAATTGAGACCTGAATTACCCCACAGATTACGAGCCAG
TGAGTTGAATACTGACCCAGAATTGTCGTTGACTCCACCATAGCTAATGTTGCTATTGTA
TCTACCCGAATTACCACTGTAGTATGGATTGATCTGCCGTCCATACTGGACACTATTGTT
GAAGTTCGAGCTACCGCCAATACCTGGGTTCATGCCTGGGTCAAAGTTCATACCGATTCC
ATAACCACCACCAAAAGAAGGATAACTACTACGGCCGCCTGATAGAAGCCCAAACCTTGC
ATCCATCCTCATTCCATAACCACCTACCGGGCTCGGACTGTAACCTTGGGTATATCCATT
GAGAAAGCTATTGGCTCTGTTCATAACATAGTTGATTCCTCCAGCAGGAGAGCGCATGCT
AGGTCCAGGTGATAGCTCCTTAGGAACAGCCCTCTTGACTTCAACCATCTTACCATTTAG
TTCATGAAATGTCTTGAACAATGCCTTGTCCACAGCGTCTTCAGAATCGTACGTTATGAA
CCCAAACCCTCTAGGACGCTGTGTGTTGTGATCATACATCACGACAACATCGGTGATCGT
GCCAAACTGCTCAAAATAGGTCCTGAAGTCTGCCTCTGTCACGGTGGATGCAAGACCCCC
GACGAAAATCTTCTTGGTGCGACTGGGCCCTGGTGATCCATGAGCACTGCCGCCACTCTT
GCTAAGAGCTTGCTGATCGTCTCTAGGGACAGCTTTCTTGGCCTCCACCTGACAGAACAA
TCCAAACATTCTGAATTTTTCCACAATAACAATAACTAAAAAAAAAGCTACTGCAAAGCA
ATATAACAGCATGGATCTAGCACATCATGATGAACCTAGCGCACGTAAGCAAACACAGAG
TCTTACCATCCGGCCATCGATCATATGCTTCTCCATTATTACACGCTCTGCAACTGCTGG
ATCGGCGAACACGATGAACCCGAAGCCCCGGGCGCGGCCGGTGGCTCGGTCGCGCATGAT
GACGGCCTCCACCACCTCCCCGTACTTCTCAAAGTACTCCCGGAGGCGGTCCTCGTTGGT
GTCCCACGAGATGCCACCGATGAACAGCTTCCCGGCATCCGCCTCCATCTCCGGTTCGGG
CTCCTACTTCCAACCTGCAAAGAACACAAAGACAGCAGCTTTCACATCAGATCTTACGCC
AACCGATCGAAACAGGCGCCGTCGGATCAAGAAAACGAGCGCCGCCGCCGCCAAGATCCG
ATCTTCAGCGCGCCGGCGATCCAGGCGGCAGATCTAAACACGCACGACAACGCACCAGGA
ATGCCCGGCTCCAAGAACCGATCGAAAGCGCACGAATTGGGCACCAAAATGGAGCAGAAT
TTGGCGCGGCGGGGCGCAGAGAGAGCGGTGAATTCAGGGGCAGGGCGCACCGGTTGATCC
AGGGAAGGGGTCTCGAGCTGGCTGCCTAGGATCTTGGGGGAGGCATGGCAACCTCAAAGG
CCATACCACGGCACCACCACCTCCTCCTCCTCCTCTTCCTCTCCTTCCTTTCTTGTTGTG
TGTCTCTCTCTATTCTATCTCTCTCCTTCCTTTTTATTTTTTGTTTTCCTTTTGCTATTC
TCTCTGTCTTTTCTTTTATGTCATGTGAGGTGTTTATATATAGATGTCCTTGTAGTTTTT
TATGCCCCTTTTTCTGCCTCCCTTCCCTCTCTCCTCTCTCTCTCTCTCTCTTATTATATA
ACGTTTGTGAAATTATGTTTATTTATTATATGAATATATTTCTTTTCATCTAGTCAGATT
ATATATATTCTTTTAGAATTCAATCCTTGCATTTAGTCATGGTTCCAAATAAACTACTTT
CATTGTATTATTCAAAACTACTAATTTTAGTTTTGAATATATCCTTCTAATTTCCTCAGT
TTGCCATAGAAAAGTCATCAAATTTGGTTTTAGGTTTTATAATAACATTCGCTCTTCTCG
TGGTAATTTCTTGTTTCCTATATTGTTACCTACATATTTTTTTATTACATCATTTTTCAC
TTGTCCACGTGATTATTAAAATAGAAATATTTTTCCTCGTGCATCCTCAAGTTTTTCACA
CAATTTTATGTGCCGTCGTGGTGTAGCGTTGCTTATTTATTTGAGAGTAACTGCATGATT
TTATCGGTTTTATCGAGAGTCAGTAAAACCACACATTGTATTTTTTCTTTATGCATGACA
CTACATCACATGTAGTTTTATTTTATCTAGATAGAATATATTAATTCTATTTGATAGGTT
ACCCTAAATGATTTTTTTAAATAAGAGGTGCGGTATATATTTGAGAATACATACATACAT
ACATAGATACAT