Map Locations of contig_66062 (6288 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_66062

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74541 1 612 bp AK248906.1 Available Available None





CDS Structure of MLOC_74541






Contig Sequence (6288 bp)

>contig_66062 6288 assembly3_WGSMorex_rbca.fasta
TACCCTCTTTCTATTGTCGGAATCGTTACCACGACACATGATAAACACCATTCTTCTTGT
CAGTCTTCTTCTTGAAGTTTGTGTGCTACTAAGCCTTGTTCTTCCCATCAAACTTTCCCT
TACCATCAAACTTGCCCTTGTTCTTGAACTTGGGGGGTTGGAAGTTTTTCTTATGTACCA
GATTGGCACTGGAACCTCTCTCAATACCTCGAGCATGTATGTCTTTTTCTCTCGCCTTTT
CTTCAACATCACGAGTACCAATGAGATCCGGAATGGAAAACTCCTGCCTCTTATGCTTCA
TAGAGGTAGCAAAGTTCCTCCACAAGGAAGAAAGCTTAGTGATGATACCTCCAGCAGCAA
ACTTATCTGGTAACATACAATTGAAGTGCTCAAGTTCTCTAGCAAATTATTGTATCATGT
GTGCTTTCTCAACCACAGAGCACTCATCAGCCATCCTGTAATCATAGAGTTTTTCCATGA
TATACAACTCAGTGCCAACATGCGAGACCCCAAAATTGGACTCAAGTGCATCCCACATAT
ATTTTCCATTGTCAATTGATGCATAAGCATCAACTATGTTCTCACCAAGAACACTCAAGA
GAGTAGCTTTAAACAAGGTATCGATTTTCTGAAAAGCTTGTTCCTGTTGAGGATCAAGAA
TTCCTTCACGTTTGCCGAGAGTTGCTTCATAACGGCTCATGGTTCAAAACCATAGAACGA
CCCTCACACGCCACCTCTTATAGTGCACACCCTCAAACATATGTGGCCTCATGGAAGCAG
CAAAATCACTCAGGGTAAATTGCCTATTATAAGGTTTTTGGATTGTTGAAAAAACGAGCA
ATTTACCGAATGATTTGAATGAAACAAGTAGCAGTAGATAGAACAAGATCGTAGTAACTG
AAATGACACTAGACATTCAAATTCGAGGACAATATGCCATAATAAGAGGAATGAAACTTA
TCACGGGAAATACAGGATAGTAAGCAAATATTATATGAACATGTGAACTAGACCGAAACA
TATCTAGAGCAGAAAACTAGACCAAGAAACTCTAGCAGGACCTCAAATAGAGAAGAAACA
AACACGTACTGAGCAGTGGTAGTGGTAGTACCATTAGCGTTGGCGTTGATGTTGCTAGTG
GCCATGTCATCGAAGAGGTTGTTAACGTCGGGGGAAGAAGTCGTCGTCTGGGAAGTGGTC
GTCGACGTCCATGATGAAGAAGTCCGTAGTCACGCAGAGAGCTCCCCAAAAACCTTATCA
CTCTTCTCCCGTATAGGAATCAAAGTGGTGGGGTTTCAGAGGTCTAATGTCCCGACCTGC
GTTGCACACCACATGTCGAGATGGGGAAGAACCTAGCAGTAGCTCACCGCTTGGAACTTG
ATGGCGAGAGGAAGATGGTGTTCGAGTGTGTCTCTCTGGAGAGGAGTGACCTCTCTTTTA
TATGCACAGGAGAAGGCGAACATGCAACGATGAGAGGTGAAAGAAAGAGAGGGACACGAA
GCGAAGACGAATGGATGCACCGCTCGCATTCAATCTCCGCTATAGGAAAAGATATTAGAT
ATCGACTCGGCTCATTCCTGCAACCTGCGATGCGTCATGATGAGGCGTGGCGTGGCGTGG
CGTGGCAAGGCGGGCGGGGAGCGAAGGAAGAGTGTGTGTATGTCTCTTTTATTCTCATGC
TCGTACATGTGGTGAAACATCCTCCCTTATAAGAAGGTCCAACTCCTACCAAACTAGCAA
TGTGGGATTACACTTTAGTTCCACCTCTTGCCTTGCATGAATGGGCTAAGTGAGCCTCTA
GGATTTATTAGGAATTCTGGAACTGCTTATTTGGCTGGCCCAAAATAGGTCAAGTTCTGC
CAGAGAGACCATCTTCTTTAGATGAGACCATGAATTTCAAGGACTGGTTTTGAAGTTACT
TCACTTTATAGAGAGATGTGTGGCCGCTAAAGCATGAAAGAATAATTGCACTCACTGATT
CCTTAGTTAGACGGATCTTGGATCTTGTAAATTCTGCCATGAGGAGGAAGTCATTGTGGC
CATGTTCCTATGCATGGTTTGTACGCACACCTCATTTCCTCCAGATTTATTCTTCAAATG
GTTGCAACTTGTCAAAGTTGAGATTCGATAGAGACATGGTGGGAGAGAGTGACTTGGCCG
ATGAGTCTGGAGTGGAAGGTCGCACGTATGGTTTGTGACAGCCATGCACGGAGTGGCTAA
TGACGCAGTCAGTGAGAGGGGCACAGTAAGGGAGAGGGGGGGGTCAGGTATATGGTCACA
AAATTGTCAAACTCTTGTTCCAACAACTTAAGTGGAATGTATGATGAAGTTTAGTTAACT
AAATGGGTTGATTCCTCATCGAAAAGTGAGGCCAATTGTCGAAGTATCCATCGGTCTTGC
AATGTATTTCTACTTCTGTCCTTGATATCTGAATCATGAAATGCTGGTTGATGTGGGATA
TCGATACTTGTTGTATGTTTACCATTTCCTTGCGAGTTCGTTATGGTGCAATATTCAGTT
GTTCCTCTAGTTAGCTTGACGCGGTGATACTCCATGAGTCCGTGGTACTACATTTTTCTG
TAAACATACCTCTGCTGCTCTATGTGTGATTCAGGTCTGGGTGGGCATGCGTCTCAATTA
TAGATTTGTAACCACAAAAAAGAGGAAATGTAAATAAGAAATCCTAATATACCGCGTGTA
TAGATGCAAGAAGTGGTGTTAGAGCATCTCTACCAAACTACCAAATATGGCACAAATCTC
AAAACTACTAATATATCCATTTTTGATGATCGTGACTACCAATTCAACCCCTAATTCCAA
GGAAAAACTAATAGCTACTACCACCTTTTGCCCCAAGGGTGTCAAACAATCACTCCTTAT
CCCAAAAATATTTGGGCTGAAATTTCCTCCTTCCCCGCCAACCACTGTTGGTATGGACTC
TGATGCCAGCCAAAACAGAAGCAAATGTCGGTGCACCCCCCCCCCCAAGATTGTCCTTGT
ATTCTCTATGTTAAGCCCATGCGCTAGAATGATTCTTGATACTCCCGAGGTGTTCTGCTC
AATGCCAACAAAGGCAAAAATATTCTTCTAATTTTATTGATGAATTGCAACCTGTTTATG
CACATATTTTATAGTTTTTTTTAATATTTGCACTTATATGATTTAATGATGAAGTGGAGG
GCGGTGTCTCCTCATAAATCGACATGATGACGAGACCATCATCATAGATGACATCTTCTT
CTCAATGCCAAATGAGAATGTAGATGAAGATGTGTTTGAGGTTGCACCTATAAAGAAGAG
AGGATGATCTCAAGGGCCAACAATTACACGATACTGGAAGATGAGGCCTTGATCATGGCA
TGGCAGGGTGTTAGTCTTGATGTTGTCATGGGTAGAGTTATATCACATTTTGTGCTCGCA
TTCATGATCATTATCATAACGTCATGAAGTGTGAATCCGATTGGTCAATGACTTCACTCT
CTCGTCGTCATGGTGCAATTCAAGAGGATTGCAACAAGTGCCAGGTTGCTATAAGCGAGT
TTAGGCCAGACGTGGTGTGCCATATCAAGAGCATGTGATGTGAGTATATTATTTTCTAGC
TGTCTTGTAGCATGATTCATTGACTATGTTATCTTGCTATTATGTGGTGCTTGTGACTTG
TTCATTTGACAAATCAAGATCCCCCATTTGTACAAGAAAAATGACAAGAAGAAGCCATTT
TTTCATGTTACTAGACATTGCTCAAGAACCGTTAGAAGTCAACGTCAAAAGATGATGAAG
CTCCACCAAAGAGAATGAAATCAATCACTTCCTACTCTGTAGAGTTTGACGATGGTCTCA
ACATGTTGACAATGAGGGGGACAAATATAAGTTGCACTCCAAGCTCGACGGTGACAACAC
GGAATAAGCCTCCATGAAGGAAGCAATAGAAAGAGAAGTTGAAGAGAAGATGAAAAGGTG
ATATGTTCTAAGGGGCCCTGCAGGATAAGATGTTGACAACGAAACACGAGAGACTGGGAG
GAAGCAAAGTGAAACGAGTTGGAGGCCATCGAGCAACACAAGGCTGTCATTGAGGTGAAA
TCGAGAGACATGGAAGAAAAGGACCATGAAAAAAAAATATGAAGAAGACCACATGGATGG
CCTTTAACTAGGATGTCTAAAGTTGTGTTTGGTTCAGCTTTTTTTTACCAACTTCTGCTT
TGAAAAGCTAAAAGCTAACCAAAGGGGTAAATGTTCAAAGCAGCTTTTGAGAATCTGTAT
CTTCTTTCTAGTGTAATTAAAAGCTTCGTCTATCCCAACTTTTCAGCTTTCAGCTTTTCC
ACAACCAAATGGTGGTATCCGATGACGAAGAGTAGGATAATATGTAGTACGTAGAAATAT
TTTTTACATGTTTTGAATGGATGTAGAAAACCAAATATAAATAAGTTGGATGTAGACAAG
TATATTTAAGTGGTGAGTGATCAATACCCTCGGACGCATCCAAATGCGTCCGCCCGCGGC
CATTTGAGGACCAGATTTGCAAGCCGTAGTTGTACGTAGCCGCCGTCACTAGAAAATTGT
AGTGCGCACACAGCCGACCGTGCTGCCGCGCTGCTTGCTCGAGCACCGCGACCCGACCCG
GTCCCTTCCATTCGTATCGGCTCGGACTCGCGTGCGTCGCGCTTGCGGACCGAAAGCATG
GCTCTTCCCCCCCTCCCTGCTGCGCGCCAAAGACACCACACAGAACAATTCTACGACTCT
GCGTGTACCAGTCCAGCACCACGAGTCGCGACGACCGACCGGTGACGGCGCCAGCACGGC
CGACGACGAGCGTCTCCGGTCCGGCGGAGCAGCAGCGCGTCGACAAAAGCGCGGAAACAC
GTCGTTGCGACGACGTGGCGGCGCCTCACTGGCCAGCGCCGGTGCTTCGCCGAGCTTCAT
TTGCTGCCGCAGTTGAACGTGGGGCCGGCGCCCAGGTGGGGACGTCCCACCATCGGGGTC
GCGGGTCCACCACCGTGGACTTTGACGGGTCGTCGCCGGCGTCCGGGCCGGCGACGGAGA
AGGCCGCGCCGCTCCGGTCCACACCCCCACTCGCCCCCGCAAACGGCCCCCAGTCGTCGC
GAATTCACAGCAATGCCATCCCACCCATGGTCAGCTGGTTAGTCGGGCGAGAAGGGCATT
TCCGTGAATAAGCGCCACATCCGCGGGCTGTTGCGGCGCCCCCCGCGCTACAAATATTCC
CTTGGCAATGGAAAGCCTCAAAGCCCAGCAGAAGCAGCAGCCACCACCTACTCTTCGTCT
CCGGCGATGGGTAGCAGCCGCCGGCGGGGCGACCGCCAGCTCCAGCTACTGCACCGCCTC
CTCGCGCTCTCCTCGCTGCTCCTGCTCGCCTCCGGGGAGGTCATCTTCGAGGAGCGGTTC
GAAGGTAGTAAAAACTCCCACTTCCCAGCTCAGCCAGACTCTAGAGTTGCTGCTTGGTTG
CCAGTTTGGGAGGTGCCTGCCTGCTCCCTACTGTACCTGCTGCTATTTCCGTGCCGGTCC
TTGCGAATTGGATTGGATTCGCTGCCATTTTGGGCGAGCGATTGATGGGCGCCTGAAAAT
TTCCTCTGCCGTCCCCCTGGATTGACCAGTATTTTTGTTCACGCCCTTGGGAATTTCTGC
TTCCCTGTTCATGGTTTTTTGGTTCACAACGGATGTTGGCTTCCTTTCAAGGGCCAAGCA
AGGACTTAGCTGCGATGCCCTTGTCCAATACATGAGTTTGATTAAGTCACTGCTACTACA
GTAGTTTCTAGTTGTCTCATACAGTTGTATGTTTCAGATGGTTGGGAGACACGTTGGGTG
AAATCCGATTGGAAAAGGAGCGAAGGGAAAGCCGGTACATTCAAGCACACGGCAGGGAAA
TATTCTGGGGATCCTGATGACAAAGGTTTGCTTTCCCATGTTTAATTGATGACGGTGATG
GTTTGCTCGCAAGTCAAACAAACTCTTGCTTACGATAACTTGATTCTGGACGTTGTCTGA
TCCTTATTTTCTATTTGTGTGCTCCAGGCATTCAAACAACGATAGATGCTAGGCATTTTG
CCATCTCAGCCAAGATACCGGAGTTCAGTAACAAGGGCCGAACATTGGTGGTCCAGTACT
CCATAAAGTTTGAGCAGGAAATTGAATGTGGCGGCGGCTATATTAAGCTAATGTCTGGTT
ATGTCAATCAGAAGAAATATAGTGGAGACACTCCATACAGGTATGTTATTGCCTACTTCT
GTCCTGTGGAATTTCCTGTTCTTACAAAGGTCCACCATTGCTGTTAGT