Contig Data
morexGenes
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Map Locations of contig_6606 (5327 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_6606

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74537 3 2556 bp AK250781.1 Available Available None
MLOC_74539 1 470 bp MLOC_74539.1 Available Available None
MLOC_74538 1 577 bp MLOC_74538.1 Available Available None





CDS Structure of MLOC_74537






CDS Structure of MLOC_74539






CDS Structure of MLOC_74538






Contig Sequence (5327 bp)

>contig_6606 5327 assembly3_WGSMorex_rbca.fasta
CCTCCCTCCCTCTCCCGCTCGTCCCCTTCGCCCAAGGGGGCTGGCGACCTAGGGTTAGGT
GCAGAGCTCCCGTCGTGCCGCCGCCGCTGCTGCTCCTCGCCGACGCCGTTCCCGCGTGCT
CGTGCGCAGCCGCCGCCGCCCCGTCACGCGTCCGCTGCTTCCCGAAGCCAGTCTCAAGCC
TGATGAAAACAGTAGATTCGGTTGGAACAACGCAGTGGGGAACTGCGAATTCATCAATCA
AACGTGTAACAGCGCCAGATTCAGGATGCTCGCCGGCCAAATTCGCCGTCCAGTCTCCCG
TGAACAAAGGCTTCCCAATCCTTTCTTTGGGACTACAGCAGCCCAGCCCAGCCCAGCCAT
CACGCAGCATTGGGGATGTTATCTTGTTGCTGCGTCTCCTTCGGTTAAAGGAGGCATCCG
CTCAGGCATATATCGCCGGAAACAAATCAAAGTAGCTCGTTTTGAAGTCCAGGAGGATAT
ATCATCCAACATCTAGCCCGTTACTGGTTTCGCCTTTTCTGATTCGCGACACGAGGCGGC
GGCCAGTGGGATGTTCTCTGCGGGTAATTTTGTTTGCTGGTACTGACTTTTTGTAATCCG
TCTGTAGGGGATCCTTGCAGAGCTTGAGTACGGACAGTCCTGCGGGGTTCATCATCACCA
GCTGTTAAAGAGTGATTCAGTGATAAGAGACCAGAAGAGGTGGTAGTGGTAAGCTTGGAG
GAGATGTACCGTGGTGGGCTTGACCGCTTCAAGAAAGCTCAGGCCTTGGAGCCCTTCTCG
GTGCAGCAGTCTGGTTCCGGCACAAAGAGTGTGCCCGCGGCGGTTAAAGTGCAGCCAGCT
CCATTGGTGCCGCCGCAAAGCTCACATCTTGGTCCCAGCCAGAGTCAGCATGCTACGCAG
AGTGCTGGCTCAAGCATCGCCGGGCAAGAGGCTGCTGGGGCTCCCAGACCAGCCGTGACG
CAGTTTGGTGGTGGGCAGTCGACATGGCAACCGCCGGACTGGGCAATTGAGCCGCGTCCT
GGGGTTTACTATCTTGAGGTGATGAAGGATGGGAATGCCATCGATAGGATCAATCTGGAC
AAGAAGAGGCATATATTTGGGAGGCAGGTGCCTGCTTGCGAGATTGTCTTGGACCATCAG
TCTGTCTCACGCCAACATGCTGCTGTCGTTCCACACAAAAATGGAAGGTTAGAGACCTTC
CTGATGTTTGATGCACTTGCTTTCAGTTGGACGTATGAGTTTTTGTTTTAAATGGTTGAA
CAAGTCTTCTTTTTAGCAACCTGAATGTTAAGCGTGCTATCAAATCAAATAGATTTCAAT
TTATTAACTCAATAGACAACGGGTTGTGCCTGTGATGGAATATTGTGCTCCTATATGCTT
TTGACCTTTATTAAGACATGCTTCTTTCAGAAATTTCTACCAGAGAAATGGCAGGATTAT
ACCTGTAAAATGTTCTTTTATCTTCATTGTGTCTTAGGTGCATAACTAACAGCTGCTCCA
TGGTACATTTGTTGCGAATGAGAGATTAACCTTTGTTTCCTTTCAGCATCTATGTTATCG
ATTTAGGATCTGTTCATGGTACATTTGTTGCGAATGAGAGATTAACCAAGGACAACCCTG
TTGAGCTTGAAGTTGGACAGTCACTTCGTTTTGCTGCATCAACCAGAGCATATGTTCTAC
GAAAGAACACAGCTACTTTTTTCCCCACTCATAGTCTCCCGTCAGATGTGAGTTTGCCGT
CTCCTCCAGACTCTGACGATGAAGATGCCGTTGTGGCATACAATACAATACTCAATCGCT
ATGGTGTTAGCAAATCAGATGTGCCATTGAGGAGAAAAGGTTCTTCAGGGGATGCTTCTG
CTTCTGCTGTAAACGACGACAACCAGGCGATTGGTAGACCGTGGAAGAGAAGTAAAAAAC
GGAGAGTGTCATTTAGAGATCAGGTTGGTGGAGAGCTTATTCAGGTGGTTGGGATTTCTG
ATGGAGCAGATGTTGAAACTGAACCAGGCCCGGTAGGTGTGAAGGAAGGCAGTCTTGTTG
GGAAGTACGAGTCTCTTGTACAGGTTACTGTCATACCAAAAGGCAAGGAGCAAACTTCAC
AAAAGGACAGTAGTGCCTCCCACAGTACCGGGGTAACAGATAAGCTGCAACAGATGCTTG
ACAAAGTAAAAAGCACAACAAGAGGCGGTATGTATGATGACCTTTACGGGGATTCTGTTC
CGGCAAAACTGGGCTCATCATGGGCGTATAAATCAGATGGCCAGCCAGAGCAAGTCAAAG
TTGTTGATGAAAAGAAGTCTAGCAAGGCAAATTCAGCTGATGATAGTGATGATGACTTGT
TTGGCGACTAGTTATTTTGTCACATTTCCTTCCAGTTAGTAGTGAATTGCCTTGATGATT
CCAAACGCATGGCATGGCAGCAGAAATGTTATTTTTTGTCTTGGGTATTGTGCTTTTTGT
TCTGCTACATGATTGGTTGTATCCTGCTGTGAATCAAGGTAATCTCTTTTTTGCCTAATA
TTAATGTTAGAGCATGCTTTCTTTCTTATGGCTGGAATCATGGGGATTGTACGAACCATG
TTGCCCCATTTCGTCATTCTTTATTTGTGCGGTGCCGTTAACTCTTTTACCCTGCCCTGC
TGGTTTCTATCGTCTTACTGTCTTAGCTTTGCTTGTGCATTATGATGCACTTCCTTGTGA
TGAAAATACAACCATTCATTCTTGTGCATTATTAGTTCATGTTTTAAATGCTTAACAGTT
AAATAGTAAAAGCTAGAGCTTTGTTTCGTCGCCTGAACTGCTGCTGTATTCATTGTTCAT
CTGGTCAAGTAGGTACATAATTTTATTGCATACTGCCATATTCTCATGTCATAAAGTGTG
GTAAGTCTTATCTCTAGTTCGTGGCTTAATTATTAGTCGTTTATTTATATTTCCATCTTT
TATTTGGCTTGTTTTACCCTACTTTAGGAGCCCCTAATATTTAAGGAGCCGTTTTCTTCC
TTTTCACTATTAAAGGGGAAAATAAAATAAAATAAAGAAATCACCCCACTGAGTCCCCCT
TTTCTCTTGAACCCTGTCCCGTTCAAACCTGGCTGTGTGGACTCTTTCTGTATGGTTGAC
TTGGTAGTTAACCATCATGACCCTGTCATCCTACTTTTGAATGAAGGTCCAAGTCCTTAT
GCATCCATTTGATAGTATTCCACCGTCCAATTCTTGTGGGAAGTATGTTGAAACTGCATA
AGGTTGCTTGCTTCTCTTCTCCCTTATTAAGGCTAACTGACATGCATCTCCAGCTAGTGA
CCATTGCTTGGACTTGGTATTTTTCACTTAGCACCTGTTTGGCAGCTCTCCGCGGAGCGG
AGCGTGTGCAGCGGGCTTTTAGCAACTCCCTGATTTAGCACTGGATGCCACTCCGCTCTG
GCGCGGAGTCGCGGAGCGGAAGGAGTCCGAACGCGCCCTTAGTTTGGACGTACAAGGTCT
CTTGTCAGCAGGAGTCTTTTGGCATCTGTGACAGGTACGCGAGGTACTCTAGCAGTAGCA
GTGGATACTGCCTGCATGTTTTGTTTACTGTCACATGGCAGAGTCTTTGTTGTACCTGCG
CCGTTGCTGTGCGGTGCTGCCTCCTCAACAAGCAGCGCTGTACCGGTGCTTGACTGCCAT
GTGGGAGATCGCGACATCGTCCATCTCTAGTTCTCTACCACCATCGGCATACCATACCGC
ATGAAACACACTCTGCTTCCCCATGCGGCTATACCTCGCTGCCACCTTCTTTCTCAATGC
CGAGCAATGTAACGGCCGGCCTTGCTGTCATCATCATCATCGTTGAAAATAAGTCATCAC
AACACGGGGGCCACCAAGAAGCGCTATGAGATGTGTGAAGAAGGAATTTTGAATTGGAAT
CGGTTTGGCAGTTCAAATAAATCTTTAAAAAAATAAGCTACAAGATGCTGGAAAAGAACA
TATGATGTCTTTGTTTCATTGACTAGCTCATCTTCCAAGTTCTTTTGCTACTGAACTTGG
AATCTTGGATAGGCTGTCTTTCTTTACATCGTGGTAGACTCTGTTTGGTGTAGCATTTAT
ATTTGAAAATCTCTCGACTTTGGTTCAGAATGAGTAGTGTGCAAGTAGAAGTAGGCGCTT
TGGCTGCTGACTGCTGGTGCTGTTGGCAGGTACATCTTGCTTCAGTCTGTCTTTGCCTTG
CGCATTGTGGGGGAAAAAGGAAACGCCGAATCAGAAACAGAAACCACTTTGCTAGTTAAC
TGATATCCCAAATCTTTTTCTGTACTTCGATTATCCGAATAAGATGATGTTACTTTGGTG
ACGTGGCTTTATTTTTGCATGGCTGAAGCGAGAGCTGCGACTGCAGATCCTGGTTCGGAG
ATTGCAACCTAGCATTTCTATACTTACTGTCGTTTGTAAACTTGATGCAGGGCACCGGTT
CCTTCATTATCATGCTTTTCTCGACGAGTTTTCAACACAGCTGAAGCATCTTGCATATCT
CTCTACCATACTATGCTTTTTTGAATCCCGTTCTTGCCAACACAACCTTTGTAACCTTAC
AGGATCTATACGCCAGCTGAATCATGTCGAAGTCATCTCATTATCCCGTAGCTTTTGTCT
TAGTACCTCCCTCTTAGATTCATCGTTATTTGAAATTTCACAGCATTTTTGGAGGGCACT
GTCCACAATTTGATGCAGTTTCATGCCTACCGCTTGTTTACATTGTATTTTTGTGATTTA
AAAGAAAGAGAGTAGAGTGATTAAACTGGTCGGAATTTACAAGTTCTTTTTTTCATTCAC
CAAGACTCTAAAGGCTGATACCAACCTTGTCTACTTAACTCAACTGGAATTCTAGGCACT
TATATTTTCTGTGAATAAGGACCTGGCTTGATGTTACAAACTTTCAACGATTCAAAACAT
TCTGGAAAAAAACAAGAAAATTTCAACCAGGTTTTCATAGAGCCAAACAAATTGAATCTC
CATCCTGAGCATGAGCCAAAGGTGCGTCGCCGGATCTGCCCTAACATTGTATATTGCGGT
TGGGAAGTTATTGTGCTAAGGTCCAGCTAGACGAATGCCCCGATGAAAAGCCGTCATAGT
TGAAGCAACCATTGTGTAATCAAAATTCATAGGGGTGAAAAGCAGTCATGGTTGAAGCAA
TCATTGTGTAAATCAAAATTCATATGGGTGAAAAGCTATCATAGTTGAAGCAATCATTGT
GTAATCAAAATTCATAGGGGTGAAAGCAGTCATGGTTGAAGCAACCATTGTGTAATCAAA
ATTCATAGGGGTGAAAAGCTCTCATAGTTGAAGCAACCATTGTGTAA