morexGenes - Barley RNA-seq Database

Contig contig_65950
Source Contig contig_65950
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_65950 (7293 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_65950

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74475	1	1046 bp	MLOC_74475.1	Available	Available	None
MLOC_74474	6	3072 bp	MLOC_74474.4	Available	Available	LOC_Os09g32944.1, FRAME:+3, EVALUE:1e-106, 13109.m03303 protein OsSPL18 - SBP-box gene family member, expressed
CDS Structure of MLOC_74475

CDS Structure of MLOC_74474

Contig Sequence (7293 bp)

>contig_65950 7293 assembly3_WGSMorex_rbca.fasta
GGGCGGGGCACTGCCCGTCGTGCGCGGTGGACGGCTGCAAGGCCGACCTGAGCAAGTGCC
GCGACTACCACCGGCGGCACAAGGTGTGCGAGGCGCACTCCAAGACGCCCCTCGTCGTCG
TCGCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTAACCAACAATCACCCGCC
AAAACTGCAAAAAATTCCCTCATTCCCATCCATCTCATATCAGCAACCAATCCTCCTTGA
CTGTGACACCGGTGAAAGAAAAGAACACCATTGCTTGCTTGAACTGTCGCCATGAAAATA
CTTGCTGCATGAGAAGAACTGTCTGATTGGCCTCACCAGTCATTTCTTTCACACACGCAT
TTTTTTCTCCTTTTTTACCGCTGATCGTCGTTTCCTTTTTTAAAAGGCTGAAAAGGCCCT
GGCTGAAACTAACCAGTTGCTCCCAGTCCAAGCAAGGAGGGCTACTGAATGAGCTGAGCA
TATCTCACTGTTCTTACAAGGATGCACCAGTAACTTTTCCTTTATCCGGCACTAACTTTT
CAGCCTTTCCATATGGATCAAGTACCCCCCATGTTTTTTACTTTGGGCAACCAGTTGCAT
ACCTGATTCATAACCCTCCCATTTTCCCGCTTTTGCACCAGTAACTTTCTAGCCCACGGG
TGTGAATTATTACCAGCGAAAAGTGGCTGATGCACTCCATGTGCCAAAGATCAGCTGCAC
CAGTCCTTTTTATGATTTGCTAGCTGCCACATTTTCAAACCTGCCCTTGGATTCTCCCCT
TTCCTGAATTATTATTTTTGGCTCTGGTTTGAAGCTCAAGAGTGGAGCATAATTTCTGAC
ATTGACAAATATGTTACTGCGACTTTCATTCTGGCAAACAAAAAATCACCACAGATTTTC
CATGACATTGACAAAGATGTCACTACTGCTTTTATTCTGGCTAAAGAAAACAGGCGCAAT
GCTCTGCTGGGGAGTCCCCAGAAAAATCATCACATATTTTAAACCAACTAGTAGGGAGAC
AAGAGGGTTAATCTGTGTTAACCAAGCCACTGTTAACCGTAGGTTACTCTAGGATGAACC
CATTTTACCCTTGAGGTGGTTTATGTCTGACAAGACTGCCCCCCGTTGCTGAATTAGTAG
TAAAACCACCAGATCCATGCGAATTCTTTGGGTTTACTCGTGGGGTTATTGTGTGCAGCA
GTTTTTGTTGTGTGGGGACTGTTCACTCCTTAAAGATGTTGCTCAACACATGACCTGTTT
TATTAAATTCTTGGCCTACCCCATCTGCCATGACCGCATCATGCTTACTAGCCTTGTTTC
TTTCCACATGAGATGCCGGACCACCGGAGCGAATTGTCGAAACAAATACGATCCCACATC
TTGCATTTTGGTGGAGCCGGTTGTCTCCGAATTGAATTTTTTTGGGTTTTCTGGTTAGCT
GAATCATTGGAGCCCAACAAAAGCCAACCGGCTCCTGAAAATTCAAGGAATACAAAAACC
ACCCGTCAATCATTTGGTCGTCTTCTCCCGATAAAAGATTGAAAATTTTCAGTTGGGACG
CGTTCGCAATGATTGGGCGCCCATCAGGCACACGATCAGGCAATAGTGCGCCGGGTGGAG
CGAAATTTGGATCACCACGCTGTGCTCCATCAGTGTTCCTACATACTACTTACATACAGG
CTGGTGCCGCACTGACATACGCCTGTTGGAACCTATGCCGTGGTCCAAATGCCCAACAGG
AGTAGCACTAATTTGCAGCGCTTTGCAGGCCCAGTAGAAAACTTTTTGTAAAGCCAAGCC
CACCCCCCATGCACTCAGCTTTGTTAACTGACGCATTGAAACCCGAGTGGTCCAGCTGCT
CGTGTGTGTGTGTACTCTTTTCTTGGTCGAATCTGTGTTCTGTTTTAATGTTTGGCAACA
AACAAGTATCCGGACCATTCTGTTTGAGTGCCGTGTTGGTCCATGTAGTTTTTGATTATG
AGTTACTCATATATGATATGCGTACGATCAATACAGCAGCTTATATTCACCGTTATTGGT
CCATGATGGCACCATGGCGGGTTATCATGCCATTGTAGCACTTTCCTGTATTATGAGAGT
AATGCTTTTATTTTCTTATAACAAGGTTATGCGACGTTGTATTCGCATGGTCTTCAAGTG
TGTTCTGATTTCGTCTCTTCACGTTATTACAATCATGTGTGTTTGGTATGTCATCAACAG
TTTCAGTAGATACTGATTAGTACACACTCATATATGGTTAGCTCTTCCTTCGTACTCCTT
TGCACGTAGATGTCCATCTTTCTTATCGTGAATCTCTTATTCCATAGGTTCCACATGCTT
GCCGAGTTTGATGAGGCTAAGCGTAGCTGCAGAAAGCGCCTTGATGGGCACAATCGACGC
CGCAGGAAGCCACAGGTAGATAGCATGAATTCTGGGAGCTTCATGACAACCCAACAAGGT
ACTCTTCTTGTCTAACTACCTCTTTTTTATTACCATGTTGGTTGCTACTATTATACATAG
CTAAAATAAACAAAATCATATAGTAACCGCAGAACCAGAAACTTCGGTTATAAAATACAT
CAATTCAAATGCAAACCCTCACCAAAATGCTCATGTTACCTGTAGTTGTTCGTACATCTT
TCGTGCAAAACTAAGGTTTCATAATTTTGTTGGGGCATGATTTCTCTTGTATAACCTATA
ACAAGCTTGACCTGCATTTTGCATGGAGCTACGGCCGTTTTCCTATAAGGACGAAAGTTG
GCATAAACATGCTGCTCTGTGTTTAATTATGTTTAATCATGGGTTTATGGTATAAATGAA
ATGCGGGATGTACTGTTCTTCAGTAGCCACAAGAGCACATTGTAACCTGAGCATTCAAAT
GAACAGGCTGAGTGCACAATGCTGCATTTTCAGTCTTTTACGTTGCTGCTACGTATGTTT
GAATACTGTACTATTTGTCTGATGCTCGGTCGTTTCATGGCGGCCGTTCAGGTTTGTATT
CAAATGCAGGGACAAGGTTCGCGTCCTTCTCGGCTCCAAGGCCGGAGCCAAGCTGGTCCG
GGATCATCAAATCCGAGGACAGCAATCCATTCTACAGCACGCACCAGGTTAACTTCGGCG
GCGCCACGTCGTCATACTCCAAAGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACC
AGATGAGCTTCAGCACCGGCGCGCCAGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCA
AGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCG
ATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGG
CCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCGTCCAAGCGAGCACGTCCCCTCGG
TCCCCAGCCTGCAGTTCGGCACCTCCTCCTGGTTCGCCTGCTCCCAGGCCTCAAGCGGCG
GCGGCGCCACCGGATTCGCCGCCACCTTCCCCGGCGGCATGGACGGCGAGCAGCTCAACG
CCGGCGGCGCGCTGGTCCCCGGCTCCAACGACAACGAGATGAACTGCCACGGGATCTTCC
ACGTCGGCGCCGATGGCTCCTCCGAGGGCACGTCGCCGTCCCTCCCGTTCTCATGGCAGT
AGGAGTCTCGAGTGAAGATCAGAGGCTGTTCTTGGGTTCTTTTGGTGATCAGTAGGCAGT
AGCTAGCTGTGCCCCTTTTAGTGATCAGGCCTACGTCCCGTTCTTTCTGTGTTTATTCTC
TCTCCTTTTCACGTTTCTATGTCTTGGACTTGATCTCTCGCTATCAGAATGAATAACTTT
GCATGATTCAGAGGGAAATCGTATACGTACTTCTGAATTTCACTGATGCATTGGAGACTA
GATTTAGACAGCCTTGTCTTTCCTTTGTGCAAGATGCAAGAACGATTCGCCTCAGGACTA
TTATTTTGTTCTATATATAGTTTCAAAGCTTTTAAATCTGGATTCAAAAAGAAAAATGTA
CTTGAAGTTCTAAATAGTTCACCTCCCATTAAGAAAGATTCATATAATGTAAATTTTGTA
ATGTAATTTGTGAACAAAATGCCCATATCATCCATGATCAACACATTTAAACAAATGTTC
ACGCATTTAAAAATATGTTTTTGACATTGTAAAAAATGTCCACACAATTTTTAAAATCTT
AGTACAATTTAACAAAATGTACACATGTTTACCAATATGTTCGTGAGATTTCAAGAAATA
TTCATGATAATGCAAAAACAAAATCTCACAATTCGTAAAAGATGTTCTTACCATTCGAAA
AAAATTATCAAGACATAAAGAAATTTCCGCGTGTTTGAAATATGTTTCATTACATTATAA
TTTTTTTTTATAAAGTGTAAAACTTTGTTCACATGAATTTAGAAAAATGTTCATAACATA
TACAAAAATGTTGGTTCCATCTACAAAAATTATAGCACTTAGAATATATTTGCAGTTTTT
AAAAATGTTCAAGTTCGAAATGTTTACAATGTATTTGAAAAAAGCAACATGTATTAGAAA
CATGAAAACAAAGGGAACACGAGCTGAGATTTTAAAAAAAATCCTAAAGAAAATCAATCG
AGAAAGCACACAAGAAACAAAAAGGAAAAAGGTATGTGCGAAAGCTTGTAAAATCGGTTC
ATTGAAGTTTCACAGAACTGTATTTTAATAGCTTATGAAAGAACACTACTAACAAGAGTG
TCACAGGCAAGAGAAGCATGCCTCTCGCAACAAGAGAGAAATAGGTTTTGCATTTTTTTT
ACAGACATCTCCTTCTTTATTCAAGTGTCAAGATAGTGGCATCGTTTACTAGTTTTTGGG
TGATCGCATTCTGGACACAACCTATACATAAAGGGGGAGCAGAAAACTTAGCTATCCTAG
CTAGTTCGTGAGCTACTTGATTACACTCTCTAACACAATGCTCACATATTACATGGTTCA
AATCGAAGGACGTAAAAACACAATCATCAAATATTGCACTAGCAATTGAAGATGAATAGC
CATATTTCAAAGCCTCAATGACCTTAGCATTGTATGAATTAATTTCGATCTTGGTGGCGC
CCAATGTACGGGCAAGGTTCATGCCAAATCTGACCACGGTAGTCTCAGTCATGAAGGAAT
CAAATCATACATCAATCTTTTCATTAGCAGCAGCAATAACCTTTTCTATGTGATCGCGTA
GAACTACTCTAATTGTTCCCTCTATAGTATCCACATCATACCCAACATCAACATTTAACT
TCATATACCCATGTATGGGCATCACCCGAGCAGCCACTGCCCGCTTTGCTTTCGGATGGA
AAAATAGGTTTTGCGTTCGTTTCATGGCCGAGGCGCAATTGGTGAAAAGCTATCGTGCTT
TCATCGAAGGCGAGTGGTTGTGTGCCGCTCAGGGCGAAACACAAGCTAGTTGGCCCAAGT
AGCTTACCAGGTTAATATAATTTCTTTCTTTCTCATATTCTTGTAAATATTCTTAATACA
TATTTTCAAAGAAATAATTTTACTTCGCAATTTTACAAAACCTAGGATTTTGGAAAATGT
TAAATCAGTATAAAATAATTATAAGCCTAATATTTAAAGTATTGATAGAATTTAAATAGA
ATTATGAATTTTCCAGAATATTCATGCGGTAAAAAATAATGTCAATAAAATTTGTAAAAA
ACATGTAATTCGGAAGAAAAGTTTTGTACCATTCAAAACGAATGTACGAGGCATTCTAAA
CAAACATCAGACGTCTCAAAAATAATTTCGTGGAATTTTCTAAAATTATTATACAATGCA
AGGAAAGGTTCCCGTAGGTTAAAACATGTTTCATATAATTAGAAAACAATACACGTGTAT
TTGGAAAATTGTCAACATATATTAGAAAAAATTAATCTAATACCATATTTTAAAATTATA
ATAAGTTTATAAAAAAATTTAGGTGTCTACAAAAAATGATGTGTATGAAAAATAGCAGAC
ACCAAATAATTATGTTTGAAAAAACAATCATGTATTTTTGGCATAGTAAATATAATCATG
TATATGAAAAATATTAAACCTGTATAAAAAATATTACATATGTATACGCACAATGTACAT
ATATATTAAAAATGTAGAAATAAAAACATATATTTTTACAAAACGTTACTCATGTATTTG
AAAATATTAAATGTGTATAAAAATATACTTCATGAGTATAAAAATTCGAAAATGTATATG
AGAAGTGTAGACATCAAAACATATCTGAAAATATGATAATCATGTGCAACATGTATAAAA
AATGTACAACATGTATGAGAAAACGTAGACATGAATTGAAAAAGTGAAAAAGGAATAAAC
CTACAAAGCCCAAAGAAAATATAATAAAACCGTAAATAAAATACACACAAAAAAGAAAGA
AATGCTAAAAAAACGTAAACAAAACATAAAAGGAACAAATTCCAATGAAAATTGAAGAAC
ACCAAAGAAAACACATAGAAAAATAAGCAAAGTAACAAAATGAAAGCAAAGAGAACCCAA
AATGAAACAATGAAAATCCGATGAATAGTGACATAAATCACATGGAAAATAATTAAATAA
CTAATGTTAGGGCATATTTCTCTCTAAATGATTTTAGCGATTGATGACAATGCGTGTGCG
ACTAATCGTGTGTATTGAGCATTTCAGATAATTCATGTCTAGGCACAAGACGGTTCACTG
CCCCTCGGAGTCTATCAAAGACGGCTGTTTTCTACGTTTCTTTTTGGTGAATTTAAGTCA
TAGAAAAGCCGTACTATTAAGAGGGGGCCNCTTCGGAAAGATTAGGGTGGAATCAACACG
TACACATCTGTTCTTTTGCACCATCTTTCCCTCGCTTCAATGGAGCTCCACCTTGTTTCC
CCTGTTTGTGCAAAGTGCGAGCGGTTGTACCGCAGGTGCAATAGTAGTACCGCTCTGTGG
GCGGTAGTAGTTTTTTACTACCGCTCTCTCGGACTTTTGCACAAACGCACCCTCAGCGGT
GGTAGGTACGGAAGTAATTTTTTTACTTCTCTGGTTGGTGGATCTACCGTGCGGTAGTAC
CGCTCCTAGAAGCGATAGTACCGCTCCTAGCAGCGCTAGTATCGGTTTGCTCGGGCTGTG
AGTGGGGATAACATTTAGATATTTTCCTCCACTATATAAAGGGATCTTCTTCTCCAAGAA
GACAATCTCTTACCTCCCCAAGCTCCATTGNNNNTCCAAAGCTCATTTTCGCCCGATCTC
TCTCCCTAGCCAATCAAACTCGTTGATTTTCTA