morexGenes - Barley RNA-seq Database

Contig contig_65823
Source Contig contig_65823
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_65823 (10146 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_65823

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74418	1	793 bp	MLOC_74418.1	Available	Available	None
MLOC_74417	1	1883 bp	MLOC_74417.1	Available	Available	LOC_Os07g02760.1, FRAME:+1, EVALUE:3e-90, 13107.m00204 protein OsFBD13 - F-box and FBD domain containing protein, expressed
MLOC_74419	3	2393 bp	MLOC_74419.1	Available	Available	LOC_Os07g02280.1, FRAME:-1, EVALUE:0.0, 13107.m00151 protein pentatricopeptide, putative, expressed
CDS Structure of MLOC_74418

CDS Structure of MLOC_74417

CDS Structure of MLOC_74419

Contig Sequence (10146 bp)

>contig_65823 10146 assembly3_WGSMorex_rbca.fasta
TTGAGTTGGTCAAATTGACGACCTAGGTACATGTGTCGGACTTGTAAACTGAGACGGAGG
GAGTACTACATAGCAAGGGATTTCATTCAGAGCAAGATAAAAATGACTTGTATGCAGAGA
TTAACTATAGCAAGAGCGTGCTTGTCCTCAACTAGATACTGATTTTATGAGTAGTTGAGT
AGGTAAAGCTGAGTTAATGCTTACATTGAATAGATGATCCGTCAAGAAAACACATCAAAG
ATAAGAAAAATAATATGGATACCATTCTAGCCGCATTTCATCAAATGGATAGAGTGCGCT
GAACTTTTCCTTCTGATCGAGGACTCCTACTTACTCCAAATCGCATGGTCTCTCCATCGA
ATCCATGTCCAAATAAGAAAGTCAGCAATAACAACAGTCGTTTTCTCAAAACAGCTGCAC
GACACCTTACTCACCTTGGGCATGGATGATGTGGTGAACAACACGGGTTGAGGGGCAAGA
ATGCAATAGCGGTCGTGGTTGTATACGGCAACTTGACGGTGGCGAGGTGTGTTGGATGTA
GAGAAACACGGAGATGAGCTCCATGCCGAGAACCACGTCGTAGCAAAAGCCCACGACCAT
GGTCGCGACTTCCCTGCCCCGCGGCGACATCCCCGGTACAAGAGGAGGAGCATATGCGGA
GCAAGGAGGTAGCACTCTGGCTGGAGCACGAAGGAGGCCTCGGGTCGTCGCAAGATTAGT
GTGCAGCGGCGAGCGCACGACGTTGGTGGAGACGGATTTGGAGGACGCAAACCTCCGTGC
CGCCGCGAGATGGGGGATAGAGGTGGTGGACCGCGAGACCTTTCACAGTAGAGAGATGGG
ATCGAAAGTGACGTGGTGTGGGAGACCGGGCATGGGACGTGCGTTCGTGGGATGCAGTTG
TTTCCCCGATTTGTGTGTGTGTGCTCCTTTGTTTACGCTGAAGTTTGTTTCGGCGCGGGA
TGTTGCTAGCGATTTTGTCGGTGCGGGGTGGTTCACGACGGCAGATCCCCTTTAATAATA
GAGATTTGGTCAAGTTACACCCTTCTCTAGACTTACTTCAGATCCTATAGAGGGGATAAG
AGAGAACTAGAGGTTCAGAATCAATTCATCTTAACGATGTTTTCTACAGATGACGACCGT
TGCTTATATATTTGCATAGTTCGATTACATGGCCCACGGACCCCTCGATCACGTACACTC
TATACCATACACAATTTGAATTACCCGCTCGCTCTTCTCGTCTTCTTCTAAGCCTCTTTA
CGCCTTCGCTTCTACTTGACACTTCCTGTTGGCACAATGACACTGATAGGTTAATCATGG
CCTTATCCGTCTACGGGCGAAGCATGCGGCATAGGATCGGATACAAATGGTATTGTAAGC
TTTTTACGAATGACATGCCACCCATCCTAAATTAACATTCTCCGTTTATCCCCGCAAGAA
GAAAAACTAGGGCGCGTCCTAGCAAAACCCAATAAGAAAGGGAAATGTTTAAAAACAAGA
ATCTTCCTGCAATAGCTGTGAAGTTTGGGCCAGTAGTTACCAAGTAAAATGGGCCCAGGG
AAGCTCAATATGACGAGGCTTTACGGCCCAGGCAAGACCTACCTTCCTTATTTAGCCCCA
CCATAGCTTTCGGCCTCTATACTGCCCGTTAACGGTTTCGCCTCCCCGAAATGCTTCTTC
CTGTGGGTAACCACGGCGGCGACGGTGACGGCGACTGGGCCGTTCAGCTCGCCGCCGAGA
TCGAGGAACTCTCCTTGGGTTCCACCGGCGGTCGAGTGGATCGTTTCAGCGCGCTCCCCG
ACGATATCCTCCATTCCATCCTCCTGCACCTCCCTTCAACCCCCGCCGCCGCCCGGACCA
GCGTCCTCTCCCGCCGCTGGCGCGGCATCTGGGCCCAGCTCCCGGAGATTCGATTCCCCT
TCCCCTCTAACCCGGCCTCCGTTGTCCCCGCGCTCGCCGCCAGCGCCTCTGGTCCGGCCC
TCCGCCTCTTCCACGTTGCGTGCCGCGACGACGCCGGCGCTAACGCCTGGCTCCGCACCG
TCGCGAGCCGCCTCATCGCAGGCGGAGAGCTTTACTTCTACAACAGGACGCCGGGGGAAG
AGAAGGGGCAGGCGGAGGCGCTGTCCTGGCAGTGCCGCACCTTCGAGCTGCCCTGCTTCG
ATACGGCTGCCAAGGTATGGCTGCGCCTAGGGTTCGTCGACCTGGAGCTCCCACCGACCG
GCGTGTTCGCCAGGCTCACTGAGCTGCGCTTAGAACACGTGAATTTGGAGTGTGGTTTCC
AGCTCGGGGACATGGTCTCGTCGCCACGGTGCCCAGCGCTGCGGGAGCTCTGCATCGCCA
GGGCCCGGGGAGTGGTCAGCCTCTGCATCATCTCGCAGACACTTGAGCGTCTTGAATTGG
ATATTCTGCATGGACTTGGGGAGCTCACTGTTGTTGCGCCAATGCTCAGAGCGTTGAATG
TGCATGCTTGCTTTGCTTGGAGGAAGCCAGTCGCTGCCATTTATGCATCGAGGCTGGAGG
TTCTCTGGTGGAGTGATGCATTTGATCCGAGTTTCGTGCTGTTCGGTGATGTGGAGAATC
TTCAGCAGCTGACCACCTTCGACATTCATGTTTATGGGCGCTTTGATTACGCACTCCTTC
AGGATTATGTGATGCTCTTACAGCACTTTCCAACTGTCTCCTGTCTTGACCTCAAACTGA
ACTATCAACGCGTGAGTAACCTTCTCTTTAATGTGGAAATACACTAGTACTTAGCAAGAA
GCTAGCAAACTGATGCCACAAAATTACCTTTAGAGTTCAATAGATTAATTTTGTATACTT
GCTTGTTATGACTTACTAACTCAAGAGTTGGAACAACAAGAACAACTATTATTGAAACAG
CTTAGATCATACTCTCATGTCAAACTCAGAATATGTTTCTAGAGAATTAGCTTTGAAATT
GTTCATTCTTCTACCCTGGAAATCTTCAGTGGCAAACATAATTTCAAACAAGTTCATTGT
ATTATCTATTGGTTTGTGAAAAAAAAGCAGTCTTCATGAATAGACAGTTTGCTTTTGGAA
CTACATTGTTCAGTTTTGGCTGTCTTCTTTTACTTTTGCAGGATTTAAGTCAGTATGAAT
ACTTGATGGGTATCATAACCAGGCTTCCCAAAATTAAGATTTTGTCCCTGTGGTTACACA
CAAAAGGACATGCAATTGGGCCTTCTGTGTTCCATCTGCTGAGCAAATGTCCTGGTATTA
GAGAGCTGAAGCTGACGTTACTTGATAACTTAGAGGTAAAGTTATAAGAACTTCTCTTAT
GTACTCCCTCCGTTCCTAANNNTAAGACCTTTTAGAGATTCCACTATAAACTACATACGG
ATGTATGTAGTCATATTTTAAAGTGTACATTCACTCATTTTGATCCGTATATAGTCTATA
GTGAAATTTCTAAAAGGTNNNATATTTAGGAACGGAGGGATTAGTACTTTGGTTATTGCT
GGAGTGATGTTAATTGATTGAAAAACATTTACGCCATTCTCACCCTAAGGCATGATCTGC
TAACAGCATATTCTGTTGATTTAATATTGTTGCTTTGCTCCAACTTTTATGTTTAGAAAT
ACATGAACTCATGAAACTGTGAAATTGACCTGATTTCAGTCATGTAGTCAATTCCTCAGG
CATGTCCCAGAGGTGCAAAAGGCCTCAGTTTTGATCTTGTAGCTGATTCAGTAGTCTAGG
CTGTTTTAGTTCTACTTCAACCCACTTCGGTATTTTCATTTTTCTGCCATTACATAATTT
GTATTTATTGATTCTCTTTAGTTTAGTCACCAGTAGCTATGTTGAGATGGAGCAGTTCAA
TGGATGTCAAGTTAGGCCTCACACATTTGAAAGATACTTCGAAGACTGGACACGTATGTT
ACAAGATTGGTGCCGATGTGAGCCCAACTGATAGTGTCTATGCGGGCCATGAGCACTAAC
AGATGCTGTTAGAGGCCTTGACCTCAAATAAATTTGAAGCAATTCTTTTAATATGGATAG
CTGGCAACTGGTGGTACAAGTACAATACTTAGGTTTGGTGTTATTCTACAAAAATAGGTT
TTTCTCATAGCACTATGTTTGCACTAAGGATCTACTCCCTCTGTCTCAAAATTATTGTCT
TGCATTTGTCTAGATATGGATGTATCTAGTCATGTTTTAGTATCTAGATGCATCTATATC
TAGAAAAATCTATGACAAGAATTTTGGGACGGAGGGAGTATTTCTTTGGTAGCTATTACT
GATGGTACATCTTGACCTTTCGGTACCATTCCTCTGTTGTCTTCAGTTAGTCTTGAGCAT
ACTTTCTCTTTATTTCAGGTGGATACACCGTGCACATCAGTTTGCGCTTGTTGTCAGCAA
CAGAACTGGAGTACATCTTACACCTTGGATGTCCTTGAGGAAGTGGAAATCCGTAACTTC
AGAGGATTGGAACATGATTTTGCCTTAGTGGATATGCTGTTTGGTGTGTCCACAGCAATA
AAGAAGATGACGATAACACTCCATCATCTGGCCAGTCCAAGCGAGGAGCTCCGCAGCTTG
GCCAACCCGGGGACCTGTTTCGAAATAAATTATAACACAAGCAAGGTGTCATATGCACCG
CCCTCCAGCCTGTTCCCAAGCACTCCGGATGACTGTTGCGAATAGTAATTGTGCAGTTTA
TTCTTGGGTGCTGATGCCCTTGATGCGGTATCTTGAGGTAATAAAATGCGGTCAGATGTG
GATTAGTTGCATGCCTTGCAAATATTTTTCCTTTCTGAAAGAAGAAATTTGCATTGTCAC
CATCCCTTGTTCCACCATTTGTCGAACATTTTCTCAGTGGCAGCTCCTTCGACTTATTTT
TCTATTCAATTGTTGCTTTCACAATCAATCAGTAACCGCATTCTTGCAATTTATGTGCTG
TCCAACTGGATATTTGTTGCGACTTGCCATTTTATTATGTTTAATGTCAGGACACAAGCT
AATATCTTGTGACGTGAAGATATGCTTCCACAAAGCTGTGTTCCCGACTGCAAATGTACG
AGTTTTGTTAGCCCGTGTCACTAATTGGAGCACGCTATGCTGTTTAAATGTTGAATTATG
TAGAACTTCAGTTCTTCAGACGGTCAGACTGCTGATCTGGGGACAGAGGTGGGACAGTTT
GGCCTTTTCCTTTGTCCCGTCCTCCTCATTTCACCTGTCTGCATTCTTTTGTTTAAATCA
AGATTTAGAACCAACTAAAATTACTCCCACAGGAGCTACAGCTACATCATATACACTCAA
ATTAAGAATGCTTAAAATTCAGCAAAATGCAAAAGGTATGTTGTGGAACATCATAAATAC
AATTTTGCTAGCTGGGAAACATCAAAGAGTTTCTCAAATCAGTGTGCCTGTGCATCAGGA
GGAAAGCTCATCGGCTTGACTGAAACCTGTCAAATGTGTCAAGCGACATGGAAAATGTTG
GATACTGTGCTGAAAATACTGTCAAGAAATAATTTAGCCGCAAATCTAAAATAATAATTC
ATTAAAAATAATCTGGGCTGAATTCATAATCTGTCGGACTATCCGAAATACTATAAGCTG
TGAACTGACAGAAACTTGCTCCAATTTGTCAAAGCATACTCAGCTTTCGGACGCATGCAG
TTCACTGAAAGAGTAATCCAGTAGCAGTAGGTATAGCAATAGCAAATGATCCTAGATGCA
TGAGCGCAATCACAGGAAGCTAGATAACTTAGTAGTATGTGCCAGAGAAATTAGGGGAGG
TATATATTTGTTTTGATGGGAAGGAAGAAATAGTTCAAATTTAGAGCGTTATATGCCCCT
GCAGTCTAACACAAACGATGGCTGACATACAGGCAAGATAAATTCGTTACAAAAATCTTC
CCATCTTTACGAGTGACATTTATACTTGTCCACCACTTTATGGTTGACAGTGTCAAGGGT
AAATTTGAAGAGTGAAAAGTGAAACTCTTGGTTTCTCCCCAACGCAGTTCACACATCAGC
ATTGTATCTCAACTATCGATTGTTTTCTCCATTTTCTCTCTCTCTTTATAAGATTAACTC
CACAACACATATCTTACATCAGTTGATAAGCACTAGAGCAGAAATGTCAGTAGCGCTATT
TACCGTGCATAATGTTTGAGATGCCATAACGGCATCACCAGTAATCTCCACAAGTGCAGG
ACCCGTCGACAAAATGGTGGAATCTGTTTCTGTCTCTGAACACGATCTTCCTGCTAGTGA
TCTTGGATATCAGCTTGAGCACTGCATGGCAGTCGGAGCACGCCCGTAGGTTCTTGACAA
TCTTGATCGTCGACCCAGGCCGCGAGCTTATCAGTCCAAATGCAACGGCAAGCTTCTCGC
TGTGGACCGCAAGTGCCTTCTCCTTGGTGGCCTCGTCCAGGTCATGCAGAACCAGCTCTG
TCTGCGGAACATGTCCATGCTCCTTCACAAGGCCATTCATCTTGTCTAACATGGCATATA
TTTCGTCGGTGCAGGGGTGGCTCATATCCCCCGCAACGAACTCATATACCTTGCGGTCTA
TCTCAATAGCACTACACCCAGGCTCTTTCTGGATGCCACTAGCCTTCATCATCGAGCGCA
CCCGCGCCACTTCTTCCCATTTACCGACAGCTGCATAGATGTTGGAAAGGAGGATATACA
TCCCTGAGTTGGCTAACCCATTGGCAACAAGGAAGTCTGCAATCCGCTGGCCTAACGCCA
TGTTCTTGTGAAGCCGGCATGCAGCAAGCAGTGACACCCACATGACAGCGTCAGGTGTTA
TTGTCAAGCTCTGCACAAGATGGAATGCTTCTTCTATGAGCCCCGCACGACCCAGAAGGT
CCACCATGCAACCATAGTGCTCGATCTTGGGATCGATGCCGTACTCATGCTCCATCGACT
GGAAGAAGCTGCGGCCTTCCTCAACCAGCCCAGAATGACTGCACGCATTGAGCAAACCAA
TGAAGGTGATATCTGTCGGCCACAGGCCCTGATCCCGCAATTGCACAAACATCTCCAGTG
CTTTTCTGCTGTCTCCGTGCATTGCATAGCCATTGATCATGGCGTTCCACACAACGATAT
CTTTGTTACCAATGCCGTGGAATACGGCGACGGCGTCCTCCAAGCTTCCGCACTTGCAGT
ACATGTCAACGAGTGCCGTGGCCACTCTGACATTGAGCTGAACACACCGACTGTTCTTGA
CATAGGAATGAAGCCACTTCCCTGACTCCACCGTACCAAGCTGTGCAACCGCAGACAGCA
CCAGCACAACGGTCACCTCGTCAGGCTCAGCACTCGACCTCAGCATCCGCCGGAACAACT
GGAGCGCCTCATTAGGCTTCCCGTGCTGCGTGTACCCGTCAATCATCGCGTTCCAACAGA
TGAAGTCCTTCCTGGGCAACCCGTCGAACAGCCTGCGCGCGTCGTCCAGCGCTCCCATGT
TCGCGTAGCAGGTGAGCATCGCCGTGACAGACACGACGTGCGGGTCTGGCATCTCGTCGA
AAAGAGCACGAGCGGCGGCGGCGTCCCCCGCCCGCGCGTACATGCTGAGCAGCGCGGTGG
CGACGTAGGAGTCGCCGGAGAGGGCCAGCTTGAAAGCGTACGCGTGCAGGGCGCGACCCA
GGGAGAGCCCGCGGCAAGCGGGGAGGGACGCGGAGAGGGTGTGGGCGGTGGGCAGGAGAC
CCTCAGACAGCATGTCGGAGAGGAGCGCGAGCCCGGGGAGGTGGAGGCCGCGGGAGGAGT
GAGCATGGATGGCGGAGGTGTAGAAGATGGTAGTGGGGTCCTTGGTGCGGCCGAGGAGGG
TGAGCGAGTGGTCGAGGCGGCCGGACGCGGCGTAGGCACGCTGCAGGCGGAAGGCGACGG
CCCGGTCGCTGTCGAGGCCCTTGCGGACCACGGCCGCGTGAAGCTCGGAGGCGCGGCGGG
CGGTCGAGCAGGCGGCGAGGAGCGACGCGGCGCGATCGGCGGTGAGGGCGCCATGGTGGC
CGCCGGAGTCACTGGCGGGGGCGACGGAGGGGAGCACTGCGGCGGACATGTGGGGAGGCT
GGGACGAACTGCGAGGCGTGAGGGATGGAGTGGCGCGTCGTTCACTGGCTCAGTCTCACC
GCGCTGCTTATCCTCGCAAGATAATGGGCCTAGTTTGGGCTGGCTACGAAGGCTAGAAAT
GGGGCTAGACCATTTTCCTTTTCACAAGTAAGTGAGGGCACCTAAAAAATACCCTCGGCG
TTAGGGTTTCTCTCCCCTCAGTGACGACTTGCTCGTCACCGTAGGGTTTCGTCTACCCTT
CCTCCATCTGCACCGGTCACCGGCGTTCAAACCGATCAAAGGGCGCTCTCCGTAGCGCTC
TCGGTCTTGACGCTCTCGTTCGTCTGTTTGGGGTCGGTTAGGGTTTCGCTCGACACCCGA
TTGAATCTTTTCTCGTGTCAGTGAATAAAGATGGCTACAAAAGCTTCAAGTTCGAGGGCG
GCGTCGGATCTAGAGGCGTTGATGAGCGAGCTTGGCCTCGAGGAGGAGTACATGGACGAT
GTGGTGGTGGAGAAGGAGGAACCTCTGCCTCCGACTACAACATGTTGGATGGCCATAACA
TGAGTCCATACGCAAAAGAAATACAACCAATATGGTTTATTCAAAACCATGTGGGCAGCA
TGAGATCTAGCCCGGACAGTTCAGATTCGCCCGCTTGAGGAGAACCTTTGTACTTTGCAA
TTCGCATGCTTGGGCGACTGGGAGCAAGTCATGGAAGAAGGGGCCCGGAACTAACACGAC
AACACGGTGATCTTGGCTGAGTACGACGGGTTCACAAAACCATCTCTGATTGAACTGGAT
ACGATAGAGCTCTAGATGCAGGTTCATGATCTCCCTGATGGTTTCTATCCTTTACTCAAA
CCCCTGGCAAGGAAAGTTGGGGAGTTCATATATGCGGAGCCCAAATCAGAAGACTTTGAG
GGGAATTTTCGAGAGTAAGGGTTCTCATCAATGTGTTCAAACATCTAAAGAACGGGGTCA
GCCTGATACAAGATGGGCAACCCCAGATATTCAAGGTGAAGTACGAAAGTCTCCCGGATT
GGTGTGAGGTCTGCGGCCATATGGGGCACCAGTACAAAGAACATGGGGAAGGTATCCATG
ACAAATCATCACTTGTTTTCAAGGAGCTACGGGCTGAGTGGTTCAGAGGTGCTGGACCCG
GACCTGGTCAAAATCGCTTCGGTGGAAGGGGTGGCCGTGGAGCCCGTGGCAGAGATGCTG
GATGGACAGGGATGGGTAGAGGTGATGCACCACCAGGGGAGTACTATGAATCAGCGGATG
CTGGGGACACGACTATGATCGATGCTGAAGGCAATCACAAACGCCCGCAGGGGGAGAACA
CTGCAAACCCTCAAGAGGCTCACCCTCATACGCATGCGGCACCTGCAGGTTCGACCACTA
CATCAGGAAAGACACAACTTATGTTAACTGCGCCCACTCCACCTCGTGCCAATAGCTCAG
ATGCGACATCTTTCCATCGAATTGGAAGCAATGCGACATCTTTCGATGAAATAGCTCTCG
TGCGACGGTTTGAATGGAGAAAATAGCTCACGGCCACACATGCGTTAAAACCTTAGTCAA
CTAGTCCAATTTGCGTTAAGTCATGTCTTACCTAATTTGGACCCAAATTAATTAGCATCG
CATCCCATAAAGCTGCCCGACCAGAACTGTTCAAAACTGCCCGCGCTCCATTCTTTAGCT
CCGGCGGCGGCTATGGCGGAGGAGCCCTCTTTCTCGGTGGAGCGGAGCCCCCTTTCAACG
GCGGCGGCCATGGTGGTGAATGAATTTGATACTCTAGTCCCAATCCCCTCCGCCTTGTAG
ATCTGAGCTCTCTGTTTTGCTTGGTGAAATCGATAGAAGGTGAGAGGGGTCGGTGCGGCG
AGAGGAGCCCGTGGTCAGGTCGAGAAGGAGCCGCCAGATTTAGCTTCGAACAGGTAATGC
TCCTCCCTTCCGCCCATTTGTGAGTGTGATTGAAGGCACTCTTTTCTCTGTCTCACACTG
CCCGCACGCTTATAAGAGAGGGGATGCTGCTGAAACCTTCGAATTTGCAATCAATTTCTT
TCCATCGATGGCAAAATTAGTTGATGGTAGCATTCAGAAAATCCAGAGAGACACAATTGT
GAAATG