Map Locations of contig_65697 (10782 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_65697

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74367 1 1291 bp MLOC_74367.1 Available Available LOC_Os02g09940.1, FRAME:+1, EVALUE:2e-82, 13102.m01097 protein peroxiredoxin, putative, expressed





CDS Structure of MLOC_74367






Contig Sequence (10782 bp)

>contig_65697 10782 assembly3_WGSMorex_rbca.fasta
TTGTGGAGAGTGTAAGCCAACTCTTTGTACTCATCTTTTCATTACATGTACTTNNNNNNN
NNNCCATTATTGCGAAACGACGAGATGCGTTTNNNNNNNNNTCGAGGCCCTCATGCCAAA
ATAAGGGTAGGACCGCATTTTGGACGTTACACCATGTATGCTGGATCGACGACGTAGTGT
GCTTCCACGACAGGAGATTGCAACCTATTGTGAGCGGGTTTGCTTGAGAAGGAGCTTTGT
CTACGCGAACTCCGGCGAGAGGCATCGATGGAGGTGTGAGAGGACGTCCAGTCCGACAAG
GAGGGGCGTTGCTGGCCGTGGAGCACGCTTATAGCGTGTTTTACTAGCAAATCGGCCATG
GGTTATGCGGGGATGAAGAACAGCCCTTTTTTCTTTGTTGACTTTTTTCAATCACCAATG
GTTGTTGCATGATTAATGAGAGGGCAGTGCGGCGGCTGGCTGAAACTTTGGGCCGATGCG
TCGGCGCGTAGTACTGGCCATACAGAAAAGCTCATAACCGATAGTGTATGGCCTCTAAAC
TCTCAAACAACTCGGCTGAATTGGAATTCGCAACCATGGGAATGGTGAAATCGGGTGTAC
CATTGCCGAGGTGCACCAGTTGTGTGGTCTCCCCTAATGGCATGACCCGGTGTGTGTACG
TGTGTGTAGACGAAGTTGTGTCCGTCTGACCCATGAGTCGCCTCTGGTGTGAAAGGAGTC
ATGGCCTTGCCATGAGCGTCACAACCCCGTTTTAGAGAGCGATGAGGACATGAATACCTT
CGATACAATCAAAAATATTGCATACACGCATAGCTGTGAAATGATTTTTTATAAAAATAT
GCAATAATTTATTTATGTTATTCAGAATAAAAATATTCCATCCATTTTTATTTGATGCTT
AAATACGGAATTGTCAAACACTTGTATAAACCACATGTGAAGATAAAGAAAAAAATATAT
TAAAATGTTGTTCAAGAAGTCCTCTCACATCAAAAATATATATTAGATATTGTTTAAGAA
GTCCTCTCACGTCATTTTTGTCTCAAGAAAAGATAGAGACCAAGTCCTCAATGTTCTGGA
TTCGGACCGAGACTACGTAGACATACCTGACTTTAAACGCCTCTAACTTTTGTATCCGGA
CTTCAAATAGGATGAATCTATTTTTTATTGGAAATATTACCTCCTGTACTTTTCAACACA
ATTTGATTCACCTTCAAATTCACCAAATCAATAGTTATCATCTCATCGAGAAACGAGACA
CCATCGCCTATAGCAAGTGGAGTCACCGTCCTGTGCAACTCGATGACGCAGGTGTCCAGA
TCCACCTTATAGGAATTGAGCTCGTCGAAGCGATAATGTGTGCTCACCAGTGACTCCTTC
ATCGTGATGGTGGTGCCTGGACTGATACTGACTCCTATGCGAGGGCATTGCGTCATGGCC
TCTCTGGATGCCTCGAGGGCCACCGTGATTCATGTCTGATTCATTGGGTTAAGCGTCGCC
GCTATGCGTGGCGCTCCTCCCTCTCGTCCTTATGTCTAAGTGTTTCCATGGTTTGAAAGG
GCAGAAGGGAAATTTTCTTTGATTACCAAATGTGATGACTTGGACATGAATTTTATTTAA
TTTCCTTTGCATTCCTCAAGATACTTTATATCTCATACAATTTGGGAGAAGGGAAGGAAG
GAGGAAGCGTGGATGTCGGGTAATTGGTACAGTGAACAATAAGTTGTGATATAAAAAGAT
AACCATTCACACCCACACCAATTGAGGCTAGAGTAAATCCAAGAGATGCCGTATTCGTAA
AATAACTATTGTTTAGGGGAAGTTTAATCCAAAAAACATCTCCAACTGATTCCGTAAAGA
CGGAATGAATTTACAGGATCCTATAAACTTAACCCTAACTTCTCTCATATTTAGGAAAAG
TTTTGCTTCCCGTAAACTTTTGGCGACAAGGTAGCTACTTGAAACTTCCCGACGCACCAC
CTCTGCCCTGCGAGAATGTCACCATGTTGCTGCCTCATCGCTGCAGTTGTGAGCGTGCCG
AAGGCCGTCACGCGTGTCACTCACCGGGCGGGACTAGGCCATTATTTGTTTTATTTATCA
AAAAATATAATATAATATAATTTTGGGAAGATGTCTTATGGGACATGACAAAATTAGCTA
TCGGGAAACTTCCTCTAAAATTTAGAGACATCATGTAAAAGCACTTTTAAGGGAAGTTTT
TTAGAAGTAAAATCATTGGATGCGCTCATCCATTTTTTTATTGTTTTGAGAATTCTCGCC
TCTTTATTGATCAAAGAGTTCATAAGTATAAGTATTGGATCATGAGGCATGCCCAGCCAC
ACATGCCTACCTAAACCCATATTACAAGCACTCCTGAAGAGATTATGAGCTTCAAAATTA
ACAGTAATAAGTTCATGAACAAAAGAACAAAGCGGGAAACCATATCTATGAATCATAATT
TCATGAATAATAGCACTCAAACAGAAAGTTGGCTTGCTTTTGTGTTAAGGCTGAATAAGT
GGACTTAACTGGACGTGAGCTTTCGACATAGAAAGTATAAGAACCGGGGTCGCTGACACA
ACCGTCTATTCCTGGCCATTCCTGGGAGGGCTCTCCTCCCTTCTCTCTGTTGCCCTATAA
GGCATAGCATCATCTGATAGTTAGAATTATATTACCTTGGGGTTCCTTTACTCCTTTTTG
TCAAATAAATAAAGTCGTTGGAAACGACAATGAGTATATTTATTACGTTAACTAAAGTTT
ATTTATTTCTCTTCATTTCTATCACAATAAGATAGACTTTACCTAGGATGGGAATGGATT
AGGTATTACTCCCTCCGTTATTAAATATAAGTCTTTTAAACGATTTTATTAGATGTCTAC
ATACGAAGCAAAATGATTGAATGTACACTCTAAAATATGTCTATATACATCCGTAAGTAG
TCCACTAGTGAAATCTCTACAAAAGACTTATATTTAGGAACGGAGGGAGTAGGTCTTAGA
CTATCTCCTAGCAATCTATACCTAATAATAAAGAGGCTATTGCTTCCGTCGGAAAACACA
CCGCGGCATTTTTATAAAAAAGCCCATGTAATTTTTATTATTCAACCCGCGTTTATCATT
ATTTTAATAAATCAAAATGATTATAAAAAAATTAAAAGCGTGTGGTATTTTTTTTCTCCC
GTTGCAATGCACGGGCCTTTTGCTAGTCTTTTATTAATAACCGCTCTTCCCAACACTGAC
GCGTCGTCTGTTTGATGCAACAAGGCATTGTGCTGGAGCTCTCCTACTGATCCGCTTGCC
AGATCACCTATAGTACGCTCGTTGCATCCAAAATGATACGCTTCACACAAGGCACGCCTC
TCGGTCAGCCCAATTAGCCAGCAGCGCAAGCAGCAAATGATGACAGTAGGAAGCGGGTTA
ACTATAGCGACCTGACATTGTAGCGGTACATACACTGTAGAGACTAGCACACTTTAGTGA
CCAGCTTTACTATACCGAACCGGTTTTCCGTGTTCTTTTGATGTCGAACATTCATTAAAA
ATGAATACCGCGAACATTAAAACTTGTTCAACTACTACAAAAATTTGTTCACAAACTATA
TAAACTTCTCAAATTCAATAAAATGCTCTCAAATTCAAAAGGTGTTCACAAAATTCAAAA
AAAAAAAATCTTGAATTCAAAAGGTGATTGAATATAATAATATGTTGTTTTCTTGGTAAA
TAAGGCAACCTTTTTTAAAACTATGAACAAATGTGAAACATGAACATGTTTTGAAATTTT
GATCTATTTTTGAAAATACAAGCTATTTTTTTGGAAAAAAAGAAAACTTTATGAAACACA
TAAACATATTTAGAAATACCAAAGATTTATTTAAAAATGCAAACGTTTTTTGGAATCAGT
ACATTTTTTGAGAATAATGAAAATCTTTCTATATTTTGAACATCGTTTTGGAGTTGCGAT
TTTTTGAGCATTTTAGAACAAATCGAATAACTTTCTATTACTTCCGATGCTTTCAATATA
TACAACTTTTTATTATGTTGATGAACTTTTCTAAAAATTGATGAACTTTTTATTATTATT
TTTCCCTTTTGCTCATATAAACGAATTTTGGTTCAATATTGATGAACTTTTTAAATTTTG
ATGAACTTTTTTCGGATTCTATGATCTTTTCTCCAACATCGATGAACTTTTTTGGATTCG
ATGATCTTTTTTCCTATATTGATGACCTTTTTAAAAAAATGATGAACTTTTAAAAAAAAG
AATGAACTGTTTTTATTGTGAACTATTTTTTAATATGAATGAAAGTTTTTTCAAAACCGA
TGAGCTTATTTTCAAAATTTATGAACTTTCCTAAAATTAGTGAACTGTTTTGTAAAGTTG
AACAAACTTTTTTCAAATTTTATGAACTTTTTTACAAATTCAATATGTTTTCAAATTGAT
TAAAAAAAAATAAACCCATGAACATTATTCGATTTCTGGGATTTCTCAAATTCAGAAACA
CTTTCGAGTGCAATTTTTTTGAAATATATTGAGACTTTTATTAAAAATGAACTTCTTTTG
AATCTGTGAACTTTTTCCATTTGGTGAACTTTTTATTGAATACGTAAACTTTTTTTGCAT
GGTCGTAAACTTCATTTGAAATCTATGAACATGTTTTCGGATAATTGAAATAACTAAATT
GTATATTTAGTGCGCAATAAATAACACCTCTACTATTTTACTCTTAAAAGTTTCTCGCTG
AGAACAATCACTAACAAATAGTTAATCGAGTGGTTAGCTTTTACTACATTCATTCCTAAA
TATAAGACATTTTAGAGCGAAAGTGCCTTTGTGCTCCCGAGCTCATTTGAGCTCGGATGA
ACAGTAAAATCGAAAAAAATCGAAAAATGTTTAAAAAATTCTGAAAGTTTTTTTAGGCCA
ATTTTTACAAAAGTTCTAACTGCATGCAAAAATTTGGCATGAACTAACATTTCTACAAGG
CGTGGAAAAATAAANNNNNNNNACACTCTGAAAATGCGCATTTTCAAAGCATCCATTTTG
TTTATTTTGCCACGCCTTGTAGAAATGTTTTTTTGAAAAATGTAATGAACTTTTTCTAAC
TTTTGAAAAATGTAATGAACTTTTTCTAAATTGGATGATTTTTTTCAATTTATATGAAGT
TTTTTTCAAATTGATGAACCTTTTTAAAAGATATGATTTTTTTCAAATGATGTGAAAAGT
TATATCTTTTCCCCTTTATATACCTTTTCTATTTGCAGGAAGCCCCCAGTTTTGAGAATA
AAACTGTCTAAATCAGTTTTCCCTGGTTCGTTGGGCAGTTTTTCGTCTGGTTCTTATTTG
CTTTTTCTTCTTCCTTTCTTATTTTCTTATTTTTGTTTTTATTAAGTTTTTTCTAAAACA
ATGAAATTTATCAAATTTTGATAAACTATCTTAAGTTTTGATCAAAAAAATTTAAACTAT
GAACTTTTTGCAAATTCAATGAACATTTTTCAAAATTAATGTTTTTTTTTCAAATTTGAT
GTTTTTTTTAAAAAATTGATGAAAAACAATGAGCTAATTTTGAAATTCGATGAACTCTTT
TAAAATTGATGAACTTTTTTTTTCCCAAAAACGATGACCTATTTAAGACACAATGAATTT
ATTTCGGAATTGATGAACTTCTTTCAAATTCAAAACTTTCTTCAAATTCATGAATTTTTT
TATTTTCTTAATAAATCTATGAATAGTTTTATTTACACGTCATATTCAGAACTGTAAAAA
ACCAAAACCGGTCTTTTTCCTGAAACAATTGCACATCTCATTCGAAAAAAATCAAACGAG
CCTAGCAAAAGCAAACAGTAGTGGATTTACTTTATTGGCCACGGACCATTGCTAGACGTT
GTAGGCGCTAGTTATCCGAATCGGCGCTTAATGCGCCGATTAGGAGCTCCCTCCTGCACC
ACTGCATAGGAGGTGAGGACTGCAGCGATCTTGATAAGAAAAAGAATACGAACGGAGAGT
ATGAAAGAGGCCCAACCCATACCTGGCCAAATGGGCCGTGTCAATTGGGCAGGCCCGACA
GCCCGACACACTCTAATCGTCCTCGTGCACGGCACGCAGCACGTCTCGGACCGTGCCTGG
GCTTGGAGGCTCGGCACGTGGGCCGACACGACACGATCCATTTTGTTATATATATTTAAT
TTTTTAATATATATATATGTGTGTGTGTGTGTGCGTGCGTGCATGCGTGCGTGCGTGTGT
GTGTGATATACAGATCAATAGACCTAAAATAAGTTCATGAAACTAAAAATATACAACACA
ACGTGTTAATCGGGTCAGGGTCAACATACGGTCCGTTTATTAACCAGGCCGTGCCTAGGC
CCGAAGGCGCACCCCACATGCTAACATGGCACGGCCTGATCGGTAAACGTGCTGTGCGAG
GCCCGTTTGCAGCGGCCCGTGCCAGCCCGTTTGGCCAGGTATGGCCCAACCAAGTGCTGG
GCTGACTGCCTAATCCAGGGCAACAGCACGACGTCCACCCATTCCGCCCCCGCGTCCAAC
GAACCAACCAAAATTGGCGCTGCTCCACCTATCACGTCGCACCCGGCCGTTCCTTCCATC
CAAAACCCAAGGGAAACCCTCACGCTCTTCCCAAGGCCGAACAGATAGCATTTCCTCGAA
TACATCGCCTCGTCCTTCCTCCATGGCCACCGCGTCGCTGTCCGCTCTGTCCTCGTCGGC
CGCCGCCGCCGGCAGGCGCTTCGTCCTCTCCTCCCCGTCGCTCGCCTTCGCCTCCCGCCG
CATCGCCGCCCCAGCCCGCCTCCGCGCCGCCGTTCTTCCGGGGGAAAGGAGATTCGCGGC
GTCCGCGGCATCGGCATCCCCGGTCGTGGCCACCATCGCGGTCGGCGACAAGCTGCCCGA
CGCCACGCTCTCCTACTTCGACCCAGCCGACGGCGAGCTGAAGACGGTGACGGTCGGCGA
CCTCACGGCGGGGAAGAAGGTCGTGCTCTTCGCTGTCCCGGGCGCCTTCACCCCGACCTG
CTCGCAGAAGCACCTGCCGGGGTTCGTCGAGAAGGCGGGCGAGCTGCGCGCCAAGGGGGT
GGACACCGTGGCGTGCGTCTCGGTGAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAG
CCTCGGCCTCGGCGACGACGTGCTGCTGCTGTCGGACGGCAACCTCGAGCTCACCCGCGC
GCTGGGCGTGGAGATGGACCTCTCCGACAAGCCCATGGGGCTAGGCGTGCGGTCCCGCCG
CTACGCGCTCCTCGCAGACGACGGCGTCGTCAAGGTGCTCAACCTCGAGGAGGGCGGCGC
CTTCACCACCAGCAGCGCCGAGGAGATGCTCAATGCGCTCTGAGCCGCGCCTGCTCTGCT
TCTTGCCTGAGTCGTGTCTAGTAGTGAATAATAATCCGACGAACTGTTTCTCGTGTGAGC
GTCCTTTGATGCGTCGTCATCGTGGAGAGGATTTTGTTTTCTTTCATTGAGCATTGCGTG
ATGTCCATGTGCTCGATGGAATGACTTGAGTTTTTCAAGGCGTCGTACACTCGTACTTGT
TCTTGCATTGCCAGCGCTAAAGCCTGCGGGTTTGCTGAGATGTTTACAAAGCTTGCGTAC
AAAATCGCATTGTGCTGAGATTGAAGTCAACTGATCAGTTCGGATTTTTCTCAAGGAGGA
TAATACCGGCCTCTCCATAGAGGCATCTTCATTAAATTAATTACAAAACAAAATACATGA
ATTAACCCAGAGCCACCTACATGTCGATCTAACTTAGTATTAGCTTATGATACGGCCTGG
TCACGCACCAACGCACATCACGATGGTCTAACCAAGCCATCCCACGATCAGCGCGTATCG
CATGCGAACCAACCTGTGATTGGATAGTTAAATAGATAGTGGTATTTTCAGCTCATCAAG
GTTTAAGTCCTAATACTTATATTATTTCTGTATTTATTTTAAGATTTTTGGCGATGCACG
TTCATTGAAAAGAGACATTTTCGTCGATGACGAGACGGGTGCGGTGATTTCACAATCTCA
AGATGATATGCCGACTCAGTCTCTCTGAAGTGCTCATAGGGTATAGTCAAATCACATATG
TTTATTTGATGGTTTTGATAATTTATGACAACATACATTGTCTGTTGGACTAATAGATTT
ATCTAGTTTATTTGAGATGAAGTCCACAGAGAGAATTGGCGGGAATAAGAGTGAGTTTGA
TCTTCGTATCTCTACTCCTTACTTTCATGTGCATGTTTTTTACTTTCCGCTGCTATATTA
GTTGACTTGCATGTGTAGGGTGTGCTAGACTTGCTAGAATTGCTAAAACTTGCCAACCAA
GAAAATTGGGAAAAGGTTTGGTTTTTATTTTGCCATGTAGTCTATTCATACCCCTCTCTA
GACATCCCTTCTCGATCCCACAATTGGTGTTAGAGCTTTGGTCTCCATAGATTTGGTTTA
ATCACTATTGGAGAAAGATGGATGTGCCTAGTTTGTGGAGTCTTAATCTAGAGTGCATAT
GCTCAATGGGGAGTACTATAGTCAATGGAAAGACAAAATGCTTGATCTGTTTGATGAATT
TCATTTAAGCCAGTATGTTGAAAATCCCTATGTGTCTCCCATTGATCCCTTACATCCTTC
TCAAGAGGAAGAAATTGATATGCTTCGTAATCTCAGAACTGTTAATCTTATCATTAAAGA
TTACCAAGAATTGTGTTTGATCAAATGAAAAACTTTGAGTGTGCTTATACTTTGTGAAAA
TATTCGGAGAGAAGATATCCACACTACTCTTTAAAAAATCTTGATATTATTGTCCATAAA
ACTATTGTCTTTCACAAAATGAAGTCTAGTGATCCCAACTTTGAAAAACACTTTTTTGAG
CTTCCTTACCTCATGCGTGCTAAAGGAGATGTCATGACCATCAATAACATCGTTGTTGAA
GCCATTCATATTCATAAACTTGAACATTGTCATGGTCACAATTCTAACGAATCTCTTGAT
TTTTGTGACGAGGATATTACACTTGATGATGACGATGTGCAACATTGCTATCACGATGAA
GATGAGAAATTTGACATGGAATATGAGAAGACTATGAAGAGTCTATGTCTCATGACAAAC
TTCAAAGACTACATGTCCGGAGGAAAAGAGTGGATTCTCAATAGTGGATGCACCGATCAC
ATGACTGGAGATAGAGACATGTTTCGGGAGATCACACCAGGCCATGGAGTTATGTGACTT
TTGGAGACAACTNNNNNNGTAAGGTACTTGGTCTTGGTAAGGTCGCCATATCACATGATA
GTTCCGTTCAAAATGTCATGCTTGTTGAATCCCTTGGATACAATCTTCTTTCTGTATCTA
GACTAGCCGATATCGGTTTCAATGTGCTATTTACTAAAGTATATTGCCAAGTGTTTCGTC
AAGACAATCATAACATGGTCTTTACAGGTTTTCATAGAGGTGATCTATGCATTATCGATT
TCACTAAAAGAGCCAAACCTCGTACTTGTCTTATTACAAAATCTTCTAAAGGTTGGATAT
GGCATAGAAGGCTAGGACATGTAGGTCTGCGCAATCTAGACAACTTTATCAAAGGTGAAC
ACATACTTGGTGTTAAAGATGTTATCTTNNACAAAGATAGACTTTGTAGTGATTGTCAAG
CAGGAAAACAAGTGGGTGGAAGTAATCATGTCAAGAACACCATGACTACTAGGAGACCAC
TCGATCTGCTTCACATGGATCACTTTGGTCCCAGTGCTATCAAGAGCCTCGGTGGAAATT
CTCTTGGTATAGTTATAGTTGATGATTTTTCCAGATTTACGTGNGTATTCTTTCTTGATG
ACAAGTCATAGGTACAAAAGATCTTTAAGAACTTCCCTCGCAAAGCCTAAAATCAATTTG
AGGTGAAGATCAAGAAAGTTTGGAGCGACAACACATCGGAGTGCAAGAACACTAATGTGG
ATACTTTTATTGATGAAGAAAATATCTCACATGAGTTCTCGGCTACGCACACACCTCAAC
AAAATGGAGTTNNNNNNNNNNNGAACCGAACTCTCATAGAGATGGCTAGGATGATGCTCG
ATGAATACAAGACGCCAAGACACTTCTGGGCAGAAGCCGTGGAAATGACTTGTCATGCAA
CAAACCAACTCTAGCTACACAAGCTTCTCGATAAAACGGCATACGAGCTACTAGCCGGTA
ATAAACCCCAAGTTGGATATTTTCACGTATTCGGCTCAAAGTTCGACATTCTTGATAACC
ATCATCATTTTAAATTTGCTCCTAAATCTCAAGAAGGTTTCCTACTTGGTTACAGATCAA
ACTCTCACACTTACTGTGTCTACAACAACTTCACTCAAAAAGTTGAAGAGACACTAGATG
TGAAATTTCATGAATCTAATGGTTCGCAAGTCGAACTGTTGGGTAACGTTGCATGGGAAA
CAAAAAACAAACACCCAAGATCTATCTATGGAGATGAACAACTACGAGAGGAGGAGTGCA
TCTACATACCCTTGTAGATCACTAAGAGGATGCATTGAGAAACGTGATTGATGTAATTGA
ACGTCTTCGTGATGCAATCATGATCCGTCCTGCGATCCAATCACGATCCTTCCTGATCTA
GCGCCGAACAGACGACACATCCGTTTTCAGCACACGTACAGTTCGATGATGCCTTCACCA
CATCGATCCAGCGAGCGTAAGTGAAGTAGTAGCTGAGTTCTCCGGCATCAGGACAACGTG
GTGGTGGTGGTGCCATCTGATAGAGCACTTGATAGAGGCGAG