morexGenes - Barley RNA-seq Database

Contig contig_65625
Source Contig contig_65625
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_65625 (9206 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_65625

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74329	1	1122 bp	MLOC_74329.1	Available	Available	LOC_Os04g02780.1, FRAME:-3, EVALUE:2e-127, 13104.m00194 protein amidase family protein, putative, expressed
MLOC_74328	1	430 bp	MLOC_74328.1	Available	Available	LOC_Os12g44370.1, FRAME:-3, EVALUE:7e-29, 13112.m04694 protein expressed protein
CDS Structure of MLOC_74329

CDS Structure of MLOC_74328

Contig Sequence (9206 bp)

>contig_65625 9206 assembly3_WGSMorex_rbca.fasta
TAAAATCGGAGTTACGGTTTAAAAGATATGAATATTTTTGTTTTAGATAAAATGTGGATT
GATTAACTGAAAAGTCAGGGTTTTTTTTGTTAAAACAAGAAAAACGTTTTGACTGACTAA
AAACGGAGGGTAGGTTAATTACCTGAAACATCAGGGGGTTTTCTGAGAAAAGCAAAAAAC
GATTCGTTTTCTGACTTAAATCCGGACTGCGGGTTGATTACCTGAACCATCAGGGGGTTT
TCTGAAACATTCAAAAAAACGATTCGTTTTTCTGACTTAAAACAGGACTGCGGGTTGATT
TCAGCAAACATTAGGGGCTTTTCTGCAAAATAGCCAGGACGGAAGCCTTAGACGCTTTAT
TATTAGGGAGAGATAGCGTACAACGATTTTGACAGGGAAAAAATTAAAACCGTTTTTTAA
ACTTATGAGTGGCATAGTGAATAATTTAAGTCAATTTTAAAGGCAATTTAAATGACGTAC
CACAGAAAGAATAGGTACTTTATTAATAGGTAAGGTAAAGATAAAGATATTATCTCGTAC
CACACACGATGTGAACGTTATCATTTAGGATGGGAAAAAGGCTAGACTGCGTGAGGCAGC
AGGCACCAAAACCACTTATGTCTCCATTTCTTGTGTTCGTGAGAGCGTTCTTGATAGAAA
CCTTGAGCTGAGAGAGTTGGCAAGAGGAAGAAGAAGCGGCACCGACTAGATTACGTTATA
TACATACACATAGATGCAACTAAGATTTACTAATGCATATCTGGATGACTAGCTAGCTCA
GTTGTCGTCGTCGAAGTAGACGTGGAGGTGGAGCGGGACGCCGGGGGTGGGCTCGACGAC
CTGCGTTTCGGGTAGCGCGTCGGCGAGCAGGTCCCTGAAGGCCTGCGTGGTGCCCTGGGT
GGAGATGACGGCGGTGAGGAGCCCCTTTGCGTCGCACTCGCCGTTGTTCATGGGCACTAC
GTAGGCGGCGCCGAGCAGCCGGGCGAGCTCCACGGCGTCCTCCTGGCCGGACACGAGGGT
GAAGCTGGCCAGGAGTTGCTGCTTGATGACGGGCGTGATGAGCACGTCGGCCCGCAGCCC
GCGGTCGCGCAGGAAGCCGGCGTCGTACATGCAGTGCGGCTCGTAGTAGACACTGTGTTT
GCGCTGGCCCTCTCCGGTGGTGCTGGAGGTGACGACGTAGCTGTTCTCCGGGCGCTGCCA
CGGCGGCCCGTTCACGGGGCCGGGGGTGGCGAGCACCGTGACCTCGCTCTTGGTGGCGGC
ACCGACGAGGGTGGTGGATTGGCCCGGCTCGAGGTAGGTGACGTCGTCGAAGGGCAGCGC
GGCGAGGATGGGGCGCGCGTTGGGCGTGGCGACGACGGGGAGGTCGGGGGAGACGGCGGC
GAGGCGGGTGAGGGTGCGGAGGTGGCAGTGGTCGTCGAGGCTCGAGGTGATGAGGAGCAG
GTCGACGACGCCGAGGTCCTCCTGGAGGCCGTCCTTGGGGAGGGTCTTCTTGGCGCCGTC
GAAGAGCCATGGCATGCCGAAGTCGAGGTTGCCGACGAGGAGGGGGTCGACGAGGACCCG
GAAGCGGCCGCCGTCCAGCTCCCACAGCCACCCGTTGAACTCGAGGTACGTCAGCTTCAC
CGTCGTTGCGGTTTTGGTGGTGGTGACGGTGGAGGAGGAGGGCTCGCTCTTGACGCTGCT
GCTGCTGTTTCTAATTCTCGTGGTGGCGCGGCGGATTGGTGGCCGTCGGTGGGGTGACGG
TGATGGAAGAGCGTAGATGATGGAGGGAGGAGGATGGAGGAGGCCGGCCATGGTTGCTCC
AAGCAAAGACAAGATTTGAGCAGGAAACCTTTCATGTTTTATAAGGTAACATGCATGCAC
GTGTTTGTATATGTCATCTCATGGTTCCTTTTGTGTTTTATACTCCCTCCGTTTTAAAAT
ATAAGACTTTTTAGAGATTACACTATGAGACTACATACGGAGCAAAATGAGTGAATCTAC
ATTCTACAATATGTCTACGTACATCCGTATGTAGTTCATAGTGCAATATCTAAAAGGTCT
TATATTTAGCAACGGAGGGAGTATTCGTCTGTGCGTGCTTGTCCAAACACACACGTCCAA
CTCATCATACAGTAATAGAAGGAGCTAGAAAGACAGCTGGCCCGACAACTTTGCAAAGGA
CAGAATCATGAGCAAGAACCATAAGCCCCATAGGAGTGAATTGCAGAATACATCAACACT
AAATGCTAGGTTTGCAGAAACCACAAGTCTACAAAATTGTGTCGAAAACCATTCTTGTTT
TTTTTACGATGGTACATTCTGGTTTTTATGATAGCCATGGCTGCTCTCTCCATCTGCATT
CGTCCTCTCGTCTGCCCCCAAACAAGCTGAAGGGAACCTTTCATGATTTTTTGTTTTTGT
TGTTTTATTACTAATTAAGGTAACATGCATGTTTCCCTTTTATTTTGCAGGGTTGCTTTC
GTGTTTGTTTCTAGTGTTCATCTATGCTTGTGATTGTGAATGCAAACACGTACGTCCAAC
TCATATATATATATACACCCAGACAGAAGGGCAGCTGTTGGCCCATCAACTTTGCACTAC
AGAAACTGAAACGGAAGCCCTTGAATATTGTGTGGCGTCCAACCATCACAATGCATCACG
ATTAGTCAACGAGCTAGCACCATCATAAATCACAACATATTACTCCCTCCGTTTCTAAAT
ATAAGTCTTTAAAGAGATTTCATTATTGGACTATATACGGATGTATATAGACATGCTTTA
AAGTGTAGATTCACTCATTTTATTCCGTATGTGGACTCCTACTGAAATATCTTAAAAGAT
TTATATTTAGGAACGGAGGGAGTACATGTATGCTCCCAGCTATCTGGAATTTTTACGTTC
GCAAACGGATCTACCGGCTCAGACACTGACGCTCATTTTATTTATTTTAGAGAAAAGTCT
AAAAATAAACTTTAAAATTTGTAATCCAAGTCTAAATTGAATCCTGATCGTAAAATCCCT
GGATCAAGCGCGTACAGGGTGTTTTCGAAAGGACTACAACTACTGCTTCAAATCCAACAG
ACGAAGTTTAAACTTAGATAATAAAATAATCACATCAAAGTTTAAGCAAAACAAATCTAG
TTGGTCAGCATGTAGGTAGCTAAACAACACGAGGATATCCGGTTTGATGAATTTACAGAA
GTTCTGATGGAACTCTGTGGGTAAGCCATCCGGACCCGAGGCTTTGTTGTGCTTCATTGA
GAGAACCGCTTTTCTAACTTCTTCCTCAGAGTATGATACTGTTAGAACGTTGTTTTTCTC
ATCTGATAGAACTCTGCAGGAAAACTATCCAGATTTGGAGATGTCATCTGTTCGGGATTT
ATCCATCGAGAAGTTTCCTTTTTGGGGGCTCCAAACAGATTTTTATAATCATTAATGATA
TAAAATTTAAGTTGCTCATGTCCTTCAATTGTATATCCTTATCCTATCTTTGCCTCGTAC
CGTAAGCTTTTTCATTGCAATGATGCCCTCGAGTCAAACTACAAGCAATGAAAGAAGGTC
TAAAGCTCGCGACTGAGCACTCTCAAGCTACAATCATATTACAATATGACTGTGATGTGG
CACTCAAGATGCTTGCGGATGTCTCCTCCAACAGATCAGCATATGGCCATTTGGTGTCGG
AAATCAAGAATTACATGAGTAATAGGGTTGTTATTCATGTTAAAATTCTTCGTGAACAGA
ATAGGGTTGCACATTGTTTAGCGAACTTTGGTAGATGTGGTGATAGCACAGCCTGTTGGT
TGGGCCGTCCACCTCCATGCATCAGCAGTCTAGTCGTTGAAGATTGTAACACTATCATTT
TGAAATAAAAACCCTATGATTCTTTGCAAAAAAGTACATCCTTATCCTATTGTAAGGAAT
GAATAAGTTTCTTTCGGGGTGTAATGTTTAAATCTCTTAAGTAATAAAACGTTCATTTTC
ATCAAAATAATAACCAAACACGTCCGGTCCAACTTGCAAACTCCGACTCCGATCCATGCA
TGCAAACCATTTACAAGTGTTGGCGAGGCCAAACCAAAGCGTACCAAATAAAACAGGTCC
GACATATGTGGGCGGGAGGATAAAAACAAGCATGGAAGCGACGATCGGAGAGGCGGACGC
GGTGGGTCGTCTCGAACCGGGCAAGCCGTCGGCGCTGCAGCTCGTCGATCACCTCGCCGA
CTTGATCTATTTCTTGTTCAACGACGACGAGTAGCCTTGTGGTAACGCCGAGGTAGCTGG
AGGAGAACTACTTGGCCAGGCTTGCGATGGATGCTGAGTATGATGGTGACGATGAAGCTT
GTGCTATCTGTGACGACGATGTGCCCAAAGCCGTGACTAGAGGAGCGCCGGCCCAATGTC
GTCGTCCATCTCGGCGATGAGAGCATGCTGCTCCACCGCTGCCGCCGCCTGCCGAGGCTT
CGCGCAGTCGCGCTTGAAATGGCAATGTTGTCCGCAGTTGTAACAGCGCCCCCCGCCTCT
TCTTCCTGCGGTCCAAAACCGTGCTAGCCATCCCGTTGTCGAGGTTGAAGCTGCCGCTGC
GCTGTCACTGCCATGCCTGCCACTGAGCCGCCGTGAGATCAGCTGCTTCTTAGCTCGTTC
GCCGTCGGCCAGCGCGCGTCACCGCGATTGTTCGTCAAACCCTTAAGAAAAGATTTTTTT
TTTAAAGGACCATCTCTCGAAACGATTTGTTAAAAAGGACCACATGCGGTATCCAAAGAC
AAAAAAGACCCCCTTCTCGCGTGACGGCAGGAGCGCCAGACGACACGTGGCACCTGCCCC
TTTTTATCTTTAGGTACCACATGTGGTCCTTTTTAGCAAATCGTTTCGAGAGATGGTCCT
TTTGGACAAAAATTCTTAAGAAAACCGAGCGCCTCCTCGAAAGGCATGGTGTTGGGGTCA
CAGAATTGCTCAATGCCGGCCACCGCACTCCACATGCGGTCTGACACCGTGTCCAGGAGC
CTCTTCACTATTGCCACGTCGTGCAGCGTCCCCTCGAGCCCCGCATAGTGCGCTGCTATG
CTTTCGATCCTACCGGTGAACGCATCCCGCGACTCCCCATCGGACATCCGCAACCGATCG
AATTCTCCATAGAGCATGGACAGCCTCGTCGCCCTGACATGAGCAGCTCCAACGATGCGT
GTCTTCAGGTAGTCCCAGACCTCCGCCGTCATCTTCTCTGGCGATACCTGCATCAACAGA
CCCTCCGAGAGCGCGTCGAGCAAGTAAGCACGCCCTGGTTTGTCCTTCTTCGTCACGACT
GCCTCTGCCGACCACCGCCTCCCAGATGTTAGCAGCGTCCAAGTTGCCTCGACCTTGATC
GTCCACGTGGTGTAATTCTCACCAATGAGCATCGGCACATGCATCGATAGTGAACCCACC
CCCATCCACCGACGTACGGGACAAGCGACATCGCCGCCGATCGTCCTACGCCACATGTCT
CTAATACCAATTCTTAGAGCAAAAATAGAAGACGACTCGCCGGAGGCAAGATCGGAGAAG
GGGAAGACGAACACAGAGATTTCACAGTCGCTCGAACACCTTGCCGCCCGAACGGCCTGC
TCTATTTTCTTCCGAGCTCGAACTCGATCGTCTTGCCTCAATACATAGTGGGAAGGGGCT
TTATACATGCGCGCACAGACGCGCCACGCCGCACTCCCGACGCACCTCACTCCCACGTTC
TTCACGCCCCACGCTCCACAGCTAACGCGCCCGGCGTGCACGCACGTGCGCAACACGGCT
GGATCCAGCGCCCTGACGCGGTCACCCCTATGCATATTGCGCCAACTAATTAACGCACAC
CTGTAGGCACGCACGCACGGACACATGCACACACACGCCTGTGACCGGACCTTGCATGCA
CGCCGATAGCCACTGATCATGGCTTATTCCTAACAATGAGGATATGGTGACCCGCCGGAC
ATGGGTGTTTGATCGATTTTGGACGATGATGGAAGGTCACTTTGGTTTGTCCTGTGTCAA
TCGATTGGCAGTTCTCCTCAACTAATTATTTAGATACAGAGGTAGTAGAAAGATGACAAG
GCACTACTCATGTGTGAAAAATCCAACTATATCTTTACACCTACTGTTCGGTACTCCCTC
CTTTCCAAAATATAAAATATTTTAAAGATTGCACTATGAACTATATTCGGATGTATATAG
ACATTTTAGAGTATAGATTCATTCATTTTGTTCTGTATGTAGTCTCCTAGTGAAATCTTC
AAAAGGTCTTATATTTTGAAACGGAGGAAGTATCTTTATACATACCTACTGTTATGTACG
TTGTGTGCGTGTCTGTGTGTGTCAAGTAGCAGTGTTTCCAAGACGGTGGCTTCCTCGGAT
CGGATCGAGTCCTGCCATCCTCTTGCCACCTCCTTTAGGCATCAAGGGGGGTGGTGCGTC
GACAAGAAAAGCTTGGCAGGAGTTTATGTTCTTCGAAGGACTGAGATCGATCGAGATGTG
GTGAGTTCTCGGTTTTGGCTAGGCGCTTTTGTGTTGTCGTGGGTGGTTGTCCTTGGACTA
GTCGGATGTGGAATTATGCTACGCTCGTTGTTCGCAACGAATGAGAGTCATACTTGCAAT
TCTCACTTCTTCTATAAAGCTCTGGTACGCAATTTGCGTACTCTCGAAAAAAAAGTAGCA
TTGTTTCTGCAGTCTGGATCGGTCAGCCTCTTGATCTTTATGGATTTCCTTTATGTATTG
GGCTGCAGGTTCTATCAGAAAACACTAATAGAAAATACTCTCCTATATACTACTCCCTCT
GTATTAGTTTTGTCCAACTATAATTATTTACATACAGAGGGAGGAAGGACGTGCATGTTC
TTCATAACATAACATAACATAACTGTATATGGATGGAGGATTCAGCATCACACAGAGAAA
GCGCGCTTCCCCAGTGCAACTGTATATGGATGGAGGATTCTGTTTTCTTAATTTTGATTT
TTTTTTCTCTTTTCTCTTTTTCCTTTTTTATTTTCTGTTTTCTTTATATCTAAATAATAC
CGGATTACAAAAGGTTCCGACATTTAAAAAAAATGTGCATTTCGAACAAACAATCAAGAA
ATCATATAATGTTTGTGGGTTCAAAAATGTTCATGAATTCCATACAAATGTTCATGATTT
CAAAAGAATTGTCAGAAATTCAAAAAATGTTCACAATTTAAGACAATGTTCATGAATTTG
TAAAAACCATTCACGAATTTTAAAAATGTTAACGATTTAAAAAAATCATGCCTACAAAAA
ATGTTCAGTGGTTGAATAAAACGTTCATGAATTTAAATAATAATCGCAAAGGCGCAGGGT
TCGTGCCAAATAGGAAGCCTCGCAGCAGAATAGCACCGCGACATAACATCAGAGGGATAA
TTGGAACCAATCGATCGAGTTTCAAATTTGTCTGCATAATGGTGAAAATCTACCTAGTAC
ATACACTTGACGGTATATATTTCATATGTTCAGTCAGAATCATACAATGTCCTGTACTGG
ATAATTCAGCAAGATATGACCGAATTGGGCTAAGCTGATGAGCCCCAGGCTGCTGCCGCC
TCGGCTTGGAGCGCCTCCTGGAGCTCCTGGGCTACAGCGACCAGGAAACGGTCACCACCA
TGGCCTGCGAGCAGCGAGACCGACACCGGAACGCCGTGGCGGGTGCCCAGCGGGATGCTC
ACCTGGCAGAACCCCGACAGGCCGGCAATGGATAGCAGGGAGAAGGCCCTCGCCCGGAAG
TCCTCCAGCAACGCCGCGTCCATGCGTAGCTTCGGTGGCGCGCCGGGGACCGTAGGGATT
GCCAGGATTCCGTCGTCCTGCATAATGCAAATTCATTTAAGCAGTGCAAAAGAAAAGAAA
AAAATCAACTCCTACTACTGCCTGACAGACTGAATGTTCAGAAATTGTGTGCAGCAATGG
GATTATGATATATAGCAGTGTATGAGTTTACCTTGAGGAGAGCGGCTAGGGCAGACTTGA
ATTCGGTCCTGACGGCATGAAGATCATCCATGGCGGATCTATCCTCCGATGCGATGGCCT
CCTGCACTCGCTCTCGGATGCCAGGGCCGAGGTTGGGTTTCACCGTGTTCACCCACTCCG
CGTGGTTTGCTTTGAATTCAGACCTGAAAACATGCGGTACATCTGCACAAATTTAATCTC
ATCCATGTGCATACATACAATGTGGAGTAAACTGCTGGCATTTCAATTACAAAGACGGCC
AAGTTCTGTCCGTGGAATTATGAAAATGGCATGGCTTCAGTTAAGGGGCAGTGGGGCACA
CAATTTTATGATACCCCTTCCGTTCCTAAATATAAGCCTTTTAGAGATTTCAATATGGAT
TACATACAGAGCAAAATAAGTGAATTTACACCCTAAAATACGTCTATATACATCTGTATG
TACGTCGTATTGAAATCTCTAAAAGTGCTTATATTTAGAAACAGAGGGAGTACATGGTTG
TAAACACGTACTAGGTTGTAGACAACTGACTGAAAAGCAGCAAACCTTTGAAGGACACGC
ATGACACGTGAGATTGCAGACAGAGAGGGCACACAAGATGATGATGCTTCGATCGCAGAC
AAGTCGGTCATAAACTTGCCGATCCTCGGAACATTGCTGGAGACAAAATCACCAAGGTCA
CCATTGTCCACCACTGCATCACCTGTCAGCCAGTCAAGAAACACACCGCAGAAGGTTCAG
AAACTTATATACCCTACCCTACCCTGCCCTGCCCTACTCTGCATCAAGGGATACCAAGGA
TGGATGAGTTGGGAGTTCTTGCTAGATACTTACTGCCGAATACCTTGGCCGCGCAAGCAT
TGAGGATCTCGTAGGTGTGGTCATCGTCAGAGGAGCCCAAGATCTTGAAACAGTCAGCAG
GAATTATGACACGGCTCGGTCGTGGCAGCTCGGCATCGGTTGACACCGGCGGCAGCAACA
CGTCGCTCACACGGGACAATGTAGCTACATCTCTGGCAAACCATCCTGTGTAAGCAGAGA
CACAATGACATGGTTTCATAGAACTGAATAAACACTTGAGCTTGAGCAGATGAATAATGT
TGTGTGCTGAACATCTGAATAACAGAAGCACCGCTAGACTGGAATTACCGACAGTGTCGA
ACATCTGCGCCATGGGGACGACGTTCTCGGCGGAGACCACACCGTGGGAGGGGCGGAGGC
CGAAGATGCCGCAGTATGCGGCGGGC