| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_6551
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_74279 |
3 |
3096 bp |
MLOC_74279.2 |
Available |
Available |
LOC_Os01g70060.2, FRAME:-1, EVALUE:5e-77, 13101.m07604 protein protein of unknown function, DUF618 domain containing protein, expressed |
| MLOC_74278 |
1 |
770 bp |
MLOC_74278.1 |
Not available |
Available |
LOC_Os08g31680.1, FRAME:+1, EVALUE:7e-12, 13108.m03285 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_74279
CDS Structure of MLOC_74278
Contig Sequence (5829 bp)
>contig_6551 5829 assembly3_WGSMorex_rbca.fasta
AGCCCTTTAGGACAGATGGCCCAGGTAGCGGAAAACTTGCACTGAAACGAAGATCTAACG
GCCAGGAACAATTGAAATACAAAATCTAACGACCGAAATCGTTGATGGCGTGAGAAAGCT
CCGTTTAGGCTCGGTTTTACTGTCCTAAATTGGAGTTAGTTAATGAATACGGTGACTTTA
TGAAGTTGTGAGCATAGTTTTTGTGTGCATGCTTGAGTGCACTCACGTACGTGAGTACCT
GACTTTGTGGTACTGTGTTTGGTTCATGGGGTTTATATCATCAAAATCAGCACTAGAAAC
CTTACAAAAATTTTGCTTGCATTTGTATACTTATATTAGCAACACATGCAGTTGTGATAA
TCCAGTACTAAACCATGAATATTATTGTTTTGTTGAAACTAAGAATGCCTTTAACATCAA
GATTCTTGTCTCGGTTTGTGAATAAATTTGTTGCAAATGAAGGCTTCCACATGAAGTAGT
TAACTTTTGAACCACCTTTTCCTACCAAATTATCAAACAATAAATCCTTATTTAGCTGGG
AACTAATTGAATAGCAGTGGATCGTGACCTAGATAAAGACCACGCTATCAACTTACATTG
TGTATAATCGGAAATTACTTTTAGAGCTCGGATTCTTATGGAGCTTATTGAAGTTACATA
AATTTTTGATAAAAAAACCACATGTTCATATAGATGTATTCTACATGCAGGCTACACAAA
AAGGACAAATTCATAGCTACACAAAAAAGACAAATTCATGGTTTTGAAAATGGTGAACAG
TACATACATTGTTCACTATTAAAAATCCATGTCTTTTCAACTACAAATATCCATAAAAAA
AATTCTTTTGTAATTCACAAATTAACTAATTTCACCATTAAACTTTATCCACATATAATA
CATCCATGTGAACGTGTAGAATTTTTTTTCATATATTTTTTGGAACTTCAAAATGTGGTT
TCAAATTTTCAATATAGCAGAGCCCAAGCACCAAAACGCCTCACTCCATGTATAAATGGC
TAGTAACATGATATTTGGAGCAGACCGTTCTAGGCGGCAACAAGCAAAGCAAACATGATT
GATAAATAGCAAACACCATCAGCATCAGGGATCTAAACAGCACATTACCTCAGTTGCTGC
AACTCACGTTAAGCATTCCTACCACAACGAAGTAGGGGAAAACTATGCAGGGCAGCATAA
CTAAATGAGCATGAAAGAAGACTTAACAGAAAGTGTCACCTCTCGCACCAAGGACTGGAA
TTACATGTCCCTAAAAGAAGACTGGAAATACTTGCACCAAACATGACAAGAACAGCCATG
TATATTTCCTCTGTCACCGAGAATTTCACAGAGAACACAGGAAATAACGATCTACAACAT
GTCATGCTAGATAGCATCTGCCTTTGACTGTCACAATTTCAGAGCTCGGTCTGGCTGACA
GAGCAACAGAATCCAAACATGTCGAAGTCTAGCTGACAGAGCAACAGAATCCAAACATGT
CGAAGTCTATAGTTTTGACTCCATGACCGAGCTGGGAACAACTAGATCAGTTGACTTAAC
TAACTGTCTGCGCAAGCTAATATCAGGCTAACTGACTAAAATGTACAACACTGGGACAGC
CTTCCAAGCTCCACAACACATTACAGTGATGGATCATCATGAACCATATATCCTTTAACA
AAACAAAATCTATGACAACTTTTCTCAAGCTCCATGTACCACAATCTCATATGCTGGCTG
GCTGTCGCTACTAATCTGCAGATAAGGGAACTAGTCTGATTTCCTGTTCATTGGTGGGGT
GCCGAGGGGAAAGGCGGGCCATAGAAGGGACCTCCAAATCCAAGGAAACCTGGGTGAGGA
GGATTTGGAGCACCAGGGAAAGGTGGTGGCATGTTGATCATGGGATAGTTTACAGGTGGA
GGAAAAGGTGGGAAATATTGCATTCCTCCCATTGGAAGAGGAGGAACTGGCATAAATGCA
TCTGTAGAAGGTGGTGGTGGTGGGATTGGGGGCGGCATTGAAGGTGGAAGTGGTGGTGGG
CTAGACTCTGGTGATGGAGGATACTGAGGCGGTGGTGGTGGCTGCTCAAATGTATCAGGA
TGCGGGAATGGAGGTGGCGGTGGGAGTGGGAGTGATTCAGGCTGAGGAACAGATATACCG
TTCTCTATCTTCTGCCTCTTAGTACCAGGGGAGTGCTCTTCTGTTTTCCGCTCAAAGTTG
TCCCTGGTGGCTCGTGAAGAAAAGCCGCCGTTGAGGGTCTCATGCTCACCTGCATCTCCT
TCCCGTGAATACCTCACTGCAGTTGATCGTCCCTTCTCAATAGAATTAGCATTAGCTAAA
ACTGGGGGAAAAGTAGCAGGCACTTCAGAGAGACTGGAGTTCTCAGACCCATTAGATGGC
TCGTGCCTTGGTACATCTATTCCAAGCTTCTGGCAGAGTTCATCAGCTTTCCTATATCGG
CCCTGAGCTGCCTGGTAAATAAGGAAAACGTAAGTACACAGTACCGCTATTCAAACAACA
ATGCAAGCATAACCATTGTGTACAGCCTACTACAAAACATATCAATGTAACCCAACATTG
GGACTTAAACTTTCATTGTTTAATGAGAAGAAACTTGTTTATCAGAGAACATATAAAGAT
GCCGGATACTTGCAGACGAATATTCTAGCTACGCAAGCCATGAGAAGCACGTAATGACCC
ATCCGGTACTTGCCCTTTAAGCCTATAAAATACTCACCCAATACATCATTATTTTTTACA
GGTAAGTGGCTGCTGGAATTTAGGAACCAGAGCGTAATAGCCTAGTGCACACAACACCTG
AGGGCACAGACATGCATTGATGTGTTTATGTTGTAAACCATTTCTATTCCTTTATGAGGA
ATAAATTTTTATTTCGTTCAAAATTATTTTTCAATGTAGTGTAGTGTAATCGTAAATCTG
CAAAACCAGATAATTTAAGGAGGGAAAAAACATTGTTGAACATACCCGAAGTTGGTGTCT
GACTAATTCTGTCTTGAACTCCTGAAATCAAGAGAAACATTAGGAGGGGCAGTCAAAGGC
CATGCAACGAATAAATTGTTCACATGCATGTACTTCTACACACCTGCTCATGGAGTGCTT
CCTTCAAATCAGAAAGCAGAGCGGCCCTGAGTGATTCAGACATTTTGAATTGTTCAATGG
TGTTTCTCAGAATACTATGTTGTTGCTTCAGCTCCTCCACAAAGCTATATCCATTGCTGC
TCCCTGACAATATGCAATATAAGATTTTTGAGCTACCAATAGTACACAACTGATAACTGA
AGGTAATCTATGCAAAGGAAAATACAAAGCTAGTTGATTAACTGCAGCCTTATGATGTAA
CTACTGAAGTTTAAGGGTGTAAAGTTGTACAGAGCTGGAACCACCCAGGTTGGGCTGGTC
TTAGATGGGGTGGCAAGGAGGAAGTAGTCAGCGTATTCGGTCGTGCCAGCATGTATTTAA
CGGTTTGGCTAATTTTCAGGAAAAGAACCATAGGCCACCTATGAAGGTAACACTGACATG
TTATCCATAGCACAGCAGTTTGCGATGCATAGGATACCTCCAAATTAAAGGGATACAAAT
CTCATTCGCCAACCCACATGTGACACAGCCAATAGTTAATACCCGCACTGTCACAGTAAC
ACTGAAACTCCAGATAATACTAAATAGTAAATACTAGATGAATGTAAGATAATACTGAAA
CCACTTGCACAGCACCATAATAATACTAGATGAGATGTAAAATAACATCTCACAGATATA
CATTCTTACCTAAGTACGAACTTCCATACTCTTTGTTGAGGTTGTCAACAAAGCTGAGAG
CACTGTTGCATTCTCTCATTAACTTGGCCTCATCTACAGGTGCCCGCAACATATGCTTAT
AGCTCAATATAACCTTCTCCACTAGCTCTCCACCTGTTTTTTTCTGTAAATGTGTGGAAC
CACAATAAGTTGTCCACAGTACACACGACAGGCACAGAGGAATAATATGATGTGAAAAGA
AATAATTAATATTACTTACCGACTTTAGCTCCTTAAATTTGTGCGTGTATTCTTCCTTAA
GAAGTTGTCCTTGGGTGCCAAACAACTTGCGATCTTCCCATATGTCAACCTGCAACACTT
ACACATAATCATGAAACTGAATAGAGGAAAGGGAGACATAATGTAACACCACAGGCCCAC
AATTCTAGCCCCCGCGTAAACCACACTTGTATGGCAGTTGCCTGGGCCAAGGGATTCCAT
AATTGCTTCACCCAAAATAGTAAACTCTAAAGTGCAACATTTGAGCCAGAAAAGACAATA
TGCTAGTGTAACATTACGCAAAGTAGCAAGATAAGAGGTCACACATAAATGCAAAGCAAA
TCATGCCCAACTGAGTGAAACTCCTAGGGACCTGAGATGTACATGCACAGGCCATTACCC
TGCATCTTACCCACATTACTTCACCGGGGCAGATACAACACAATGCCGTAGGATGGATGG
GAATCAAAAATTTCAGATGTATATCTACATGGTTCCAAATCAACGGCTCATTGTTATCAA
CTCTTGTTAGATTGATTACTTGCCTTGTTAGTCATTTCAGTTTGGTTAGTTTCCTCGTGG
TACTTTCCTTTTAATTACTTTTTTTTAGGTTGACTTTCCTTTTAATTTTTGTCTCTGAGA
TCTCCAACCCACCCCGGGTGAAATAATAATCATCTCCAACACACTGTACCTATAGGTAAA
CGTCAAATCCATGAGATACTGACAGAAAAATTATATCCACCGGGTGAAAATTCTATGTAC
CATGGCACTCCTAGGCTCCTACCTGAGACAATCGTCATACAAGATGCACAAACAAAACCA
AAGTGTAATTTCTTCGCTTGGGTTATGCTTCACAAAAAGATATTAATGGATGATCAAGCC
TCAAGAGGTTGGTCGCACAAGACGGTTTGTAAATATGTTTGCAATTAGCTAAGCCAATGG
CCCACGTCCACAAGGATTTGTACCTTCACCCAGGAAATCTAGACTTCATTTGCTCCTAAA
AAAACATCCAATCTACCTCCATAGATAAATCCCACTACATCGACGGGTTAACGGGATAAA
GATCACAAAGTTCTCACAAAGAAGGAAAGAAGATGGTTCAATGGGATTTTGATTTACACC
TTACAAGAAATTTGGAATGAGCGAAACAAGCACATTTACAAGAACAATGTGTTTGTTGCC
GCTAGTGGCCTTACATGCGCATGATGACATGTACTAATAGACCTAGCGACCGACAAAGGA
CAGAGGTTGTTTATGTTGTATTTGAGACTCCTACAAGTATTCTATTAATCCCAATTGAAT
GGTGCTTGCGGCATCACGAGACAATGGCACGCCAAGGCTAGCTCTGGTGGTCTTGTCTGT
CACTTGGTGATGCCATCAAACTATTTTGAATTGGTTCCTTCATGTGATGGGAGTCAAAGT
TGTTAGGTTGCAGACGCGATGGTCCATGACACTTGTGGGCGGCGTCAACATGTGAAGCTC
CCGGTGACGTGTTTTTAGCTTGAGTTGGGTTGTGATGTTGAGGCTCGAACGGGATGGTCA
TTAGCGATGCAAAGTGCCATCCCGCATCAGCTCACGTCCTTCGGTTGATCAAGAAAACCT
AATATTTCATGTCTTCTACAATTAATGTGTTTTGTGCTAGTAGCTCAGCTTGTGGGCTTT
AGCAGGACCCAGCTTTGCGACCCTAATAGCCATGCTTTGGGCCTAGTTTAGCTAGGCAGT
GGGCCCATTGTACTTGTGGTTTTCACCTGAATTTCGAATTGCCCAAGATAGAAGAGGGGG
GGGGGGGGG
