morexGenes - Barley RNA-seq Database

Contig contig_6550
Source Contig contig_6550
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6550 (6957 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_6550

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74275	2	4500 bp	AK365524	Available	Available	None
MLOC_74276	1	1566 bp	MLOC_74276.1	Available	Available	None
CDS Structure of MLOC_74275

CDS Structure of MLOC_74276

Contig Sequence (6957 bp)

>contig_6550 6957 assembly3_WGSMorex_rbca.fasta
CAGGCGCCGTCGCCGCCGACGCCCCCTCGCCGGTCTCCCAGTGAGCCCAGGAGGAGGATC
GATGGTCCCAAGGGGGACAAGTTGAGGAAGCACAACTGCGCCGCCGGTGAGATCGAGGAA
GGGGAACTTGCGCCAGATCCGGACACCAAAGCCCCGCCTCCGCATCCGCCTGCCACCGCG
GAGCATCAGAAGTGGGTTGACTCAGGCCGTGCTGATGACAAGGGAACTAGTAAGAGATGC
GAGTTGAAGAAAGTGGATTCTCCTGGGCCGAGACTAAGAGTGGATGTGAGAACTCAGGCT
GCTGACAACTTGGGGAAGGAGAAAGGGAAGATCAGGGATGATGCTGTTGCAGAAGCAGGG
AAAGCAACAAACACACAGCATGAGAAATCAGCATTGGATGTCACAGGGAAAGTAACAAAC
GCACAGCATGAGAAATCAGCATCGGATGTCACAGGGAAAGCAGCAAATACTCAGCATGAG
AAATCAGCAGCATCGGATGTCACAGAGAAAGTAACGAATACACAGCATGAGAAATCAGCA
GCATCGGATGTCACAGAGAAAGTAACAAATACACAGCATGAGAAATCAGCACCGGATGTC
ACAGAGAAAGTAACAAATAGACAGCATGAGAAATCAGCATCGGATGTCACAGAGAAAGTG
TGTGGAGGAGATGAAGCTGCCAGTGCCATTGATCAAGGTGGACAGAGCACTTCCTCCGTT
ACACGACAAGATTGTGTCAATGCTGCTGATGTGGGTGGGCAGAGCACTTCGTCTGGTATC
CTGAAGGAGGTTAGCATGGAAGAAGTGACACCACAAGTTGAAACTGCCATTGCTGTCGAT
GATGTTGGGAAGGGCACTTCATCGAGCATACAGAAAGAATCACTGCAGGAGGCTGTAATG
GCATTAGGTGAGACTGCTAGTGATGATGATATTGTTTGGATTGGCAGTTCATCGACTACG
CTGCACAAAGTTCTTCCTAAAGAAGCAACAGATGGAAACATCAATGCAGATGGCGGTGTT
GGAAATTGCATTTCATCCAGTATCCTGCAGGGGGCGATGCAGGAGGAAGTGAAATATGTA
GATGTAGCTGCCGATATCACAGATGCGCCGAAAGAGGTCAGTTCTTTCAGTATGCTGAAG
GAAGCGGTGCATGAAGATGGCACACTGCTAACTGCCAACACCGTTAATTTGCTAGGAGAT
AGCAATTCATCCGTTATGCTGGGGGAAGCAATGCATGAGACAGTAACCACGAAAGAACTA
ACTGCCAATGTGCTTGACATAGCTGGAAAGAGTAGCTCATCCACTATGCTCCAGGAAGAT
GTCATGACTTCTCTCTGCCAAGAGTCTCAAGAAATTAAAGAAACTGAAATAGGAAATGTT
GGAGACAAGAAGGTTGATGAAACAACTGAATCTATCGCATCCCAACCAGTGGAAGGGGGG
CTCGAGAGGTATGGTTGTGAAAATAGAGTTGCGCTTGACAAAACTGAAGTTGTAGAAGAA
AAAGAAGAAGCAGTTGAGAATGAAATCGTTGCAAAACAAGTAAAACATATTGATCTGGAG
GCCAATCTTGTAGGTGCTGGTGTTTTCCTTCAATCACCCAAGGACCATATTAAGGATACT
AAGGGAAAGGGCACGACTTTGGATCTGATTATGGAGAAGCCAAGGGCTGAAGATAAAGGA
AAGGGTATAGCATTTGATGTCCTTAATAAGGCAGGTGGTGGTACTTTAGTGGGGAGAGGT
TTTGACATAGGATCGCAGCCTGACACAGACCAAAAAGAAGCATGGAAATCTACAAGCACT
ACTTCCGTAAAGCAGGAAGATGACACACTCAAGATAGGGAGACTTGATCTTTCACTAAGC
TTGTCAGGTGGTTTACAGGATCCTGAATTCAGAAGTTTTATTCCGAGACCTGATTCTGTA
GCCCATGGACCATGCTCTCAGTTGTCGTCGTCATCATCATCATTCTGCACAAATTCAGAT
GGAATAACAGCTTCCGTATCATTGACCAATTCTCAAGCATTTGTTCGCAACCCTAGTTTC
TCACATACTCAACGGTCATTAGACAATTGTGAGCATTCAGTAGGCAGTAAACCTTTGTTT
CAAGGAGTTGATCAGGTGAACAACAGCACAGGATGGCAAGTTGAGTTGTCGTCAAACATA
TCTACCGAGAAAGGGAACCCTACCCCGCTACTTCAGAAAGTACTCCAAAATGGTCATTTG
TCAGATAACACTTTGGTTGGTGTGAACATGCAGAACAATGGTTTATCGCCAGTCCTGTCG
ACAGCACATAATCATGGTTCTCTTGATGCTGGATTGGGACATAGTAGACATAGAAGGCAG
CTCACAAGAGAGAGAAGTAGCAGCAGTCTTTCAAGGGGTGAGCTGCAGCATGAGGAGCAG
CTTGTTCTGAATGGTGCTGGTGTTGTTGAGAGGGTTATTTCCAAGATTGTTTCAGACCCT
CTGAATTGTACAGGAAGGATGCTTCAAGAGATGACAGGCAATTCTAGAGCATATTTGAGA
GAGGCCATTTCTGAAATCATAATTAATGCTGATAAAAGAGGACAAATAGTAGCGTTGCAG
GAGGCACTTAAAAAACGACAAGACATGAATAGCGAAATACTGCAAAGGTGTCCACGGGTG
TTGTTGGAGATACTTGTTGCTATAAGGACGGGTCTTCCAGATTTTGTAAAGAAAAGCAAT
AGCATTGCTACACCTGATTTGGTTGACATTTTTTTGAATTTGAAATGCCGCAATCTCTCA
TGCCAAAGCGTTCTACCAGTGGTTGATTGTGATTGTAAAATTTGTAAGCAGAAGAATGGT
TTCTGTAGTTCTTGCATGTGCATTGTCTGCTTGAAGTTTGACACGGCATCTAATACATGT
AGTTGGGTTGGCTGTGATGTCTGTCTTCATTGGTGCCACACGGATTGTGGCTTACGACGC
TCCTTTATTCGAAAGGGGGGAGCTGGTTCTAGGGCACATGGTACTAATGAAATGCAGTTT
CATTGCGGTGCTTGTGGACATCCATCAGAGATGTATGGTTTTGTGAAAGAAGTCTTCCGA
ACATGTGCTAAACAATGGAGGGTGGAGGCTCTGATCAGAGAGCTTCAATATGTGGAAAGG
ATCTTCTCTGCAAGTGATGATGTAAGGGGTAGGAGAGTCAGGGACTTTGTCAAGCAGATG
TTGATTAAATTGGAAAACAGGGCTTATTATTCTGAAGTCATCAAATATGTCATTGCATTC
TTTTCTGGTAAGCTGCTACCATAAGTAGTGAGAAATAATAGTTAACATTGCCATGCTTGT
TCACATCTTGCTTTTACTTGTATATTTCTAGACATATAAGACTATTAACCATGTTAACGT
CAACTGTGCTTTATCTTCAAGCCAATAACAGTTACCCAGCTTGTAGGCTTTCTCATTAAG
GATTCTCTAGTACTGCAGAATTTGTGGTCCATGCTTTCAAAACTGGTGTAAATACGAGTG
CAAGCTATCATCTGTTGGCAAATTATATCTTGCTAACGCTCTGTTTCTAATTCCAGATGA
CAATCCTAACATGGGCAGTGGTCCATTAGTGCCACTAAAGGGCATTCCATGCAGCACTGC
TGAAGGAATAAATGGGATTCCTAGTTCGAGTCGAACAGCAACATGGTTACCATCAGTTAC
CTTAGAAGGAGTTCCGTTCCTACAAAAAGCAGGTGTTGTTTCTACTACTGGGAGCCAATC
AATGTCTAGAAAAATAGCTGAAACTGGATTTCAGGCGGTCAATAATAAGCCAGTTTCTGA
TGAACTGGATGGTCTAGTGAGGTTAAAGCAGGCTGAAGCAAATATGTACCAGGAACGTGT
CAATGAAGCACGGAAAGAAGCTGAGAGTCTGAAAAATATCGTGATGGTAAAATATGCACG
CATTGAAGAACATTATGCTACTCAAATGTCTGAACTCCACATTAATGAGTTGCAAGAGAG
GCGCAAGCAAAATATTGAAGAACTTCAAGTCATTGAAAGATCGTACCACCAATTTCTCAG
CATGAAAACAAGGATGAAAGATAACATTAGGGAGTTATTGTTGAAAATGGAGGCAACAAA
ACAAAATCTAAGCACATAAACGAGGTTACTGCCGTGTTTGGTTGCAGATACCAAACTTGC
TGAGCTTAGTGAAGGCAGACTCCATATTGTGTAAGTTATAAATCTTTCATGGTATATTCC
CTTGTTGCTGAGACTACCTTACAGTAAGATTATTTATTCTCAAATGTTATCTAGTATCTT
CCTTGTTTTTTGGTTCACTTCATATTATTAATGTGATGATATGTTCAGTTTTTGAAGCTC
ACATATCTACACAAATTTTACATGTTACCAGCTCCTATATTTTGTGCACCATTCACATGG
GTAAAATTATGAACAATTAACTTTAGTTGTTGATGCATATTTTTGAATAACTATTTACAT
GCATGAGTTCTGTTTTCCTGATGTAAGTTTCTGTGAAATGGACTAAACAAAGTCACTGAT
TCTTTTCGAAGGTTCAGCTACTAAATTAGTGGACCTATCATTGAGTTCTATTCTTGTTAA
TAACATACATCTGCTATCAGTAATAGCATGGCCTGTTGATTCAGAGAGTTATCACAATGC
AGCTAGTTTGCACTTCCTTTTCCTATTTGAACAGTTTACCACAATGCAGACATGCATCCT
ATGTTGTACTCCCTCCGTTTCTAAATATAAGCCCTTTTAGAGATTTCAACACGGACTACG
TATGGATGGATATAGACATATTTCAGAGTGTAGATTCACTCATTTTGCTCCATATGTAGT
CCGTATTGAAATCTATAAAAGGGCTTATATCTAAAAATTATCATAATGTAAGAGGAGCAA
CATTTTGGCGGGAATGAAATGATAAGCTCTCTGCTAGACTAATGTGGTGTACAATCTTTT
TGCTTAATGTACTTTTAGTGGTTTGAGGCTCCCGAGTAAAGACAAATTGATGTAGTATTA
TGTAACTATATTTGGAGAGAGGAACTTCTATCTCTAGTTCATTGATAATGTTGTGCCGAA
TCCTGCGATGTACTTGTATTAATTTTAATGGTAGACGAAACAGGATATATTTTCTAGTAA
ATCTGTAAATGTATAGATTCACTACCCTGTATCGAAAATATACGTCCTTTTAGAATTTTA
CTCAAGTATTATTGGTAAAATGCCATATTACCCTTCATTTGTTTCAAATATTTCCCCTTT
TCCCTCCTAAATACAATAAATGCTAGAGTTATAGGCTCATTATTCTTTATGATAAATGAG
TGGCTAGGAAGGGCGGGCCTGGTGCAGTAGCAGAGTCTCTCCAGGCCTGGGGGATCCTGG
GATCGAACCAGACTCCTTGCAGAATTATTGTGAGAGGGTAAGGCTGTCTAGGAATTCCCT
TCCCCAGACCCACCTTGTGTGGGAGCTTTTGACACTGGGTATAAATGAGTGGCTAAACTG
GAACAGCAAAAGAAAAGTGCATATAGGGTGTAGGAGGACCTACATATATGGATCAAATTT
GAAAGGCTAAAAAAATCCTTCATTTTATGTCGGAGGGAGTTAGAAAGTAGCAACTTATTC
TTCAACTACCCTTTGTTTTGCATGCGACAGGAATATGGGAAAACCGCCACCATCATCATG
ATATATAGGCTAGTTCTTTTGAGCATTCTCCTAGGTTCACAGTATCATGCTCATGTATGA
GAATATATTGAAATATTGATACTTTTGAATATCTCTTCTCTTGTTTCTAGGACCATCCCT
CGAGCATGATGCGGCTTACATGTCTGGTTGGCAAACGACTTGTCATCTTTCTTCAGAAGA
CAGTAATGCTGAATATCAAGAAGGTGCAAGCAGACCAGCAGGTCTTATTCCTAAGAACCG
GTTTTGCTGATCCAGTTTTGAATCTGGTATGACGGAACAGCGCTGGTTTTAAGCCAACAG
CTCTGTAAGCTCGTGGAAACAGAATCTTACTGGGTCCACAGTGGCAATGGGATTATGTTA
GAGGCCAGTTGGTGGTAGTGTATGTAGGGCATGGAACTGGATCTGTAAATTATGATACAT
TGGTACTTCTCATTTTCGATGGGAATATGCATCAGGCCATGTCTCAAATGGCTGCTTAGT
TTGTAGTCTCTCTGCAACTGATGAACGAAATTCTGCCCGTGTTATCGAGGACTATCTCAG
TTATTCTATGTTTGGGGAGCTTATTGATCAACGGCATGATATTAGATCTGCTGCTATGAA
ATTAATGTTAATTTGCTTCCTGATAATATCTCTTGGTCTCTCAATAACATGGGTATTTTC
TCTACTATAAGCCTGTATACGAGTGGCTTGAAAGGGACTTGTATGCGTCTCATTACAAAT
GGATATGGAAAGCTTGCATCCCTCTAAAGATCAAGATTATTTGTTGGCAGCTCCTTCAGA
ATGCTGTACTTACTCATGATAATATGTGTAAATGGCAGCGGACTGGTAATCCTACATGTG
CTTTTTGCAAAGAGGTTGAGACAACAAACATCTTTTATTCACTTGTTCTTTTGCTTGTTA
GTCTGGGGTTTTTCAGGGTGTTTGGTATAGCTTTGGGCACCTCTTATTTCCTAATTTTCT
CTGGCAAAGTATATCGTGGTTCCATCGTGTCCTTCCCGAGGCTAAGAAATTTCATATGAT
TTGCATTGCTGTCGTTTGTCGGGGATTTTTTTAATGCGAATACGCCTAGATAGCGTATCT
TTGCATTGAGAGAAGGGGAGAGAGTTACATGGTGATGCCATGGACGCGTGCGCTAGAGGG
CGTGTTCATGGCGATCGAGTGAGCAGGGAGGGAGAAGTGGGGTTGCTCAGCCCCTTACAT
GGTTTCAGGTTACATGCGTAAGGCTAGCTAGTCCTTTGGCTCCAGCAAATGCTAGGGAGC
GGGCTTCGTCCTTGATCGAAGCGATCACTGTGGAGGTAGAAGGAGGGGGGGGGGGGG