morexGenes - Barley RNA-seq Database

Contig contig_65496
Source Contig contig_65496
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_65496 (6574 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_65496

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74274	1	787 bp	AK252068.1	Not available	Available	None
MLOC_74273	1	970 bp	None	Available	Available	None
CDS Structure of MLOC_74274

CDS Structure of MLOC_74273

Contig Sequence (6574 bp)

>contig_65496 6574 assembly3_WGSMorex_rbca.fasta
CCCCATACTTGTGCACGGGCAGTTGTAGCCACACCAGCGGCAAGGCCTGCCAGGGGACAG
CTGAAGGCAAGTACGAGGATGTCAAGAAAACGTTCAAATCTACAATAAGAAGACAGAAGG
CCAAAGGCTGGGATCCCGGCAAGGTCCTTGCCGGGATAGCTGGCGGAGCCCCGACAAGAC
GTGCACCCGGCAAGATCCCACCAACTTGCCACCGCTGCAGCGCAGCGACCAGCTATCATT
CCTCCTGGATACGTGTCAAGGCACTAGCAATGGTGGGGGTTGAGAGATGCCGGTGGGACG
GGTCCCTGTCCCCTGTCATAGAAGGTCATGGACGCCTGACGAAAGCATTTAATGCGTTTG
TCCTGAGACATCAGTAAACACTGTAACAACTGTACATCCCGTGTGTGCCCTGTTCGCCAC
TGTTGGTGACCCCTTCGACATATACAAGGAGGACCAAGGCATAGCTACAGGGGGGTTTAG
ACTCTCAGAAGGGGGGCTTCTGGAACAGTTGAGGTGCGTAGTTGTTGTGTACCACATAAG
TGCTCCTGGAGCCAGAGCCCAAAAACACTCAATACACCAAAAGCAGGAGTAGGGTTTTAN
NNNNNNNNNCGGCCCGAACCTGGGTAAAATCCCCTCTCGTTGATCGTTGGATCTGCTCGC
GTCTGGTATGCCTGGCTACACAGACGGGCGACGGTATGGACGTGGGCGGAGGGGGCGGAG
GTCTTGAGCCTCCACGACGTTCTGGTGATCAAAGCCAAGCGAGCGACGTCGTTCGCAGCC
ACAACAACTCGCGACCGCGCAAGCGTTGAGGTTGCGACTAGGTCCACACTGAGTCGTGCC
TGGCGAGGATATCAGCCGCCAACGGGAGCAGCAGGACGGCGGACTGGGACGAGCGACAGG
ATCCAGCGATCGATCTAGCGACCCGAGCAACGGGATCCAGCGAACGGGGCGGCCTTCAGC
GGGGAACAAAGGCAGCCACGAGGAAACCTTCGGCGGGAACAGCCTTCGACGGGGAAAGAC
AAGACAGCACCGAGGGCGGCTGGGCAAGAAACTGGATCAAGAGGAGCACGAGTTGCGCGT
GCAAAAAAAAGAACCAAGGCTCTAATACCATGTTAGAAAATATGCAACTTGTATTTCCAG
AAGGCCATAGTCCAGTATATATACATGTACATGTGTAGAATATGCAAGAAACCCCTTATA
CAATGGGGTAATACGGAAGATTACATTTTTTTTCAAAACGGAAGGTTACATGGCTATATA
TATAGTATTCTAACACAAATATGACACAAATTTAACTGAGTTGAACTTTGAACTCAACCC
ACAACCAACAAAACTAGCTATTTGTCTGTTGTAAACTCACATGACATCTACAATTATGTT
GAGTTGTTGCACCAATTTGTTGGACTATATAGGTTGTCTTCTCCGGAACTTTAATGCAGT
ACCCTTCTAGGCTAGGCATTAGGCTGGTATATGTAGCAGTAGTTGTTAGAAAAAGCAATC
GTATCTTCTGCTCAAGAGAAGTCAATCCATCCGATTGGTTTAATTTCAATTTTTCTACAA
AATATTGCTAATGACCAGTTCTAAAATAATTTCCTTTCCTGTTGTAGGGTTCATGGTCAT
CGGGCAGGGGTTAGCCGTTTGCTTCAAGCTGCGTGAGAGGGCGTTGCCGCGTGTTCACGC
CATGCCCATGTCTTCCACAATGCATGCTTGGTAGAGCGGGATGTGGTCTTTTTTCAGGTG
CTTGCTGCCGATTCCGCTAGATAGACTAAGACCATACATGATGCATAATTTTTTTGTGAG
GCGATGGACATTCTTTTGTATGCAACTAGAAACACTTCAAATGAATTCATTGTTTTGACA
TTGACAGACTTCCCCAGACTGTTGAATTGTGTTACTTCAATTGTACTTGATACCACAATT
CCACTGAACAAAATCTTTTGGTTTAATCTTTGCAAAGATGGGGTTTATGTTACAGAGAAA
ATGAAAAACTACTAGCATCAGCCATAATAAGGTTTTTGTGCATTAATTAATATGTGCATT
GCATGTACATGATTACTAGTATAATAGAATAGAACGAAATAGTGAACTGGCTAACAGAAC
AAAAGGCGGTATCTGAAAATAAACTTGCCTTATATCTATGTTGGTCTCATCTGGTTGAAC
ACGTGGTGGTGCTGTGTACCCAGGCTTATATTGCTGCAGGGTACCGTCAGAACTTCAAAT
TGGTAAACAGGAGTAGCAAAGTCACCATAAATGTTCACACTGGACAAGCCAACGAGTATT
CTACCAGAATATAACCATATCTGAATAATTTGGATTCATGAAAACAGCATGGAATTTCTC
ATTCTTTTAATGACTTTTTATTATCTACCATGGTAATTAGCGGCAAAATTTAGGAAATAA
ATAAATAATAATGATCTGTAAGAATAACATGCATACACTATATGAGAAAACTAGAAATGA
AGCAATTAAGTACCCTCGGCAAATCTCTTTTTGTTATTGCCTGTCCACCTCATCGAGCTT
TAGTAAAAAAGAAGAAGAAAAAATAACTTCACCCCTCCAGACAACAATCATTCATGGCAG
TAATTCCTCCAGGTCCGCAATACAGAAACTGCACACTCATGGTGCATTAGCAAATGAGAC
AGCATTTCTAGGTGGTGGCACATAAAGGCATAAAGCTCCATGGAGTGAGGCTTTCATGTG
AGCATAACATAAGGCACGCAACATGGAATGCTAAGTGGTGTTGCAGGGAAATTCTGGTGG
AACTACTGTGATGCATGAAGTCAACGGGTCACAACACACGGAAAAAAATGAAGCAGAAAA
ACCAGGGTTGCCGTTCTAGATTGTATGCAGGTTAACATACTATTCAAAATTTGTATCAAT
ACAAAGATGAAACGTGTACAAATGGTGTGAACTGGAAAAAATACTAACCTCATGGCAAAT
TTCACATGTAATGTCTCCTTTCTCATTGCACCAGCGTTGCACACACGCTCTATGAGCATA
CTGTACATGAGAAATAGAACTGTCAACTAGATACTACATAATTTGATAGATCAAACATAA
AAACATTTATATGATTTACAAGGATGGAAGTAGAATATAGATAGCTCAAGTTAAGTTTTA
CATATATGACGTGCAGCTCCGCGTGTACAGAAGGACAACATGCATACACGATTCATGTAA
TGGGATTCAATTGACATACATAAGCAACGCAAAAGATAAAGAAATAGGATCAGCAGTTCC
AATGTCAATAAATCATTATTACAATCGATATAAAAAGATTGAACTTGATAGATGAGTCCC
ATATGATCAGCTATACATTCAAATAAACTGAACCGGAAAACACAGGGTTAAGGGGCTGTT
TGGATTGTGACATGTGGGGTTTAGTACTCATTAAAAAATGCTTGCCTTAGGTGTGGCTAG
AACCAAACACCCACCTAACTTGGTCAAACTTGCCTAAGGTAAGTTGTGGCAAAGTGTGGC
AAGGTGTGGCTAGGAACCAAACAGCCCCTAAATTACTGGTGAGGCAATGATGTGAAATAA
TGGAACATGTGGATGCAAAATCAACCACACAACTCGATGCTGCTAATATGTGAATGATCT
GAAAGATCATGAGAACTAACAAAGATGCACTAGGTTGTAGGTATTATTAAGGCCGAGTCA
GATGATCTCAGTAGCCTTTAACGCTCACACTAGAAGAAGATATGAAGTATTAAGACTTAA
AATAATTTAAGTGAAACAATCACGCTTTATTCTTGGTGTAGATTGTACAAATTTTGACTA
GTGAAACTATCATATACCTCATTGCCGCATGCTTCTTGGGAAGCTAGCGCCAAGGTAACA
TTGGAACGATATAGTGGCAATACAAGATTTGCATTATTCTTCACTTTTTACTCTATGCAT
ACAGTACAGAAGATGAACATAGCTTGTCCCTTAATGATGTAAAACGGATTTTAAAGCTCC
TTTGTTCAAAGCTTGACAACTTTGTTCAAAGCTCGACAACGCTATTAACTTCACTGTCAT
GTAAGTTTCTCCATACAAGATCAAAGTCGGTTCTTTGTTAAGAAATAGGTGGCAGGCCAT
CCAACTTGACCATGGCATCAATATCCGAGAAAAAGAGTTGACACACACAGGCGCACCATA
GAGGAACATAAATGACATGGCCCAACTAGACATAATTATAGGATGAGTCAAAACTTTTGA
TACATGGCATTTTTCCGGTTAGTGTCCTTTATAGGTGGATCCTTCCAATAAACTATTGTT
GCCATACGGAAGAAAAAGAAAATACCCACATGATACTATCCTAAATATACACACAATCGG
CTAGTGCCTACTACATTCAAAGCATGTCGGAGCATACTTATAAACCATATCACATGTCAA
AGGAAATGGCTAACACATGCTGAAATAAAGCACAAAAACTAAGAACCCCAACCACATTTT
CAGTGCACAAACAACAAAACGCCTAGCAGTAGTTCCAGCCTTCCAGGAACATGAGAATCA
TATGAGAGATTTGAGAATAAAATTGGAGAGGATCAAAACCTTCAGACTGCCGTTGCACGT
ACACGGCTTCTCGAGATTCTTGATGCTGTCCTCTTCCTGGCATATGCGGCACTCCGCAGC
CGGGATGAGTGGCTCATCCTCGCCACCATCCTCCACCATATCAACAGCAGCCACCAACAC
AGCCTCAGATGGCTTCTCAGCAACGCCATCATCCTTGGTGTTCGCCAAACCGTCCACATT
CACCACCACATGGTCGCCCATCCAAAACTCCCCTCAACAGATCGAACTCCTGGAACAAAT
GACCACATCAATCGTAAGACGTTCAGATACTAGCAGAGACAGTTGCAGGCCATAAGACAA
GTATTGTAGTGACGGGACAAATAACAGTGACCAATATAGGGTGCAGCGGCGGTTATCAGT
GCCTAAAAATGGAGGGAAGCAGATGCGAATAGTACAGAAATCCCCTTTAAAAATCAACGG
GGATACTCAAAATCAGGCAACTAGAGAGCGTCATGTAAACCCTATCTCTGGCTGGCGTCT
CACCCAACTCTGTCTACCAAATCCAGGGCCTGACTACCAAGTCCACGAACGCCGCATGAT
TCGACGCGGCGGTGGAGAACAATCCGATTTCCGGTAGACTGCACAAAGAAGGAAGGTGAA
GGCGTGAGCGAACCGGAGCCCTCGCCGAAACGGTTTTCTGCCAGCAGGGGAGGTCGCCGG
CTTCTACCAGCCCCCAACACACACATCCACAACTGCAACCTCTAAATCAACCGCCGTAGC
AGGCGAGGGGGGCGACAGATGCCCCACACGCCGAATCGACACCGGTCCCCCGGTGCAGCC
GCAGATTTCACCGGAGCTGGAGAAAGGATGGGAAAGGATCGGAGGAGCAGGGCACGCACC
TTGCTGGCGACGGCGGCAACGTCGAGGATGACTGTTCTCCTCTCTTGATCCGGTGGACTA
AGTCTAGAAACGTCCTCCTCCTCTCGAATGCCCAATTCGTTGGCGTCGGTCTGCTCGTCA
AATCAACACGCGATTTCTCTCTTGGTTTTGCTGGTTCGCGAGAAAGGGAAGAAAGAGTCA
AGAGAAGGAAGCTGGTGGTCCACCGAAGGGCGCTGCCATTCCTAGTCGGCCGATTTATTT
ACGGCGGCTGCTCCTATAAATCAACCGACTAATCTTTTTCAAACATCAGTTGGGTCGGTA
GCCCTTCGATTCAGCTGTAAATGGGTCAACATATCAGCTTGTTCTTATATTTTTTTTCTC
TCGAGTCAACAGACCCAAATATCGCGTGCAGCTGCGTGCTATGCGTGTGATCATTTCTTC
ATCGCCGCCAACCACTATTGCCGATTCAGCGCTGCTGTAGGAGAACCATCCCATGATCGA
CGACAACGTGGCTTCAACGAAGCATCGCCTGTCGACGGAGCTTCATTGTAGCGTGATACG
TCTTCAATGTATTTATAATTTTTTATTGTTCCATGCTATTATACTATTCGTGTTTGGATG
TTTTATACGCATTAATATGTTATTTTATATTATTTTTGGGTCTAACCTATTAATCTAGAG
CCTAGTGTGTTTTTTCCATGTTTTTGAGTATTGCAAATAAGGAATATTAAACGGAGTCCA
AACAAAATAAAATCTTCGAAATAATTTTTTTTAGATTAGAAGAAACCTACCAGACTTGGA
GAGGGAGGCAGGAGACCTGCCGGGAGACGACANNNNNNNNGGGCGCGCCCCTGGCTTGTG
GCCCCATGCAGGCCTCCTAACCCTAATCCTCCTCCTATAAATTTTCAAATATTCCCCCAA
TGACAAGAGAGCAACAAAAAATAGCTTTCCGCCGCCAGGAGCCTCTATTCCCGTGATATC
CAATTTGGGAGCCTTTTTCGGTAATCTGTCGGAGNNNNNNNNNNNNNNNNNNNNCATCTA
CATCAACTTCATTGCCCCTTCGATGATGCGTGAGTAGTTCACCACGCACATATGGGTCCA
TAGCTAGTAGCTAGATGGCTTCTTCTCTCTCTTTGTTTTTAATACCATGTTTTTCATGAT
CTTCATGAAGATCTATCCGATGTAGTACTCTTTT