Contig Data
morexGenes
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Map Locations of contig_65331 (5115 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_65331

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_74194 1 900 bp MLOC_74194.1 Available Available LOC_Os05g06780.1, FRAME:+3, EVALUE:1e-35, 13105.m00734 protein LTPL104 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_74195 3 948 bp MLOC_74195.2 Available Available LOC_Os04g57420.1, FRAME:-1, EVALUE:2e-32, 13104.m06007 protein reticulon domain containing protein, putative, expressed





CDS Structure of MLOC_74194






CDS Structure of MLOC_74195






Contig Sequence (5115 bp)

>contig_65331 5115 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCACCCACAAAAAAAAAGACCTGCAAAGAATCAAGTAAAAACGCGTTACTA
TTGTTTTGTGCAAAGAGGGAAAGCAAATGCCACAAATTGAGGAGCTGTCAGTTCAACTAG
TGGTGATTAAAGCCTGTATGAACGGAAGATAAAAAAAATGGCCATCAATCAAGGACCTTT
GAGCTGGAACTTTGGAATAAGCTAGCGATCCATGGTTGGTTGTTGAAAAAGTGGTCTCAG
ATTTCAAACACGCGGAGCATGCATTGCTTGTGCATATAAAGGTTATTATATACAGCATAC
AAATATAATGCTACGCCTACGCGTTGTACCTTGTCAGTGATCCGCCCACAACGAGGTGCT
CGCCACAACCACAACGCCGCGCGCAATGGCACCGCTATATATATAAGAATTAAGAAGCAC
CTCCCATAGCAGGCAGCAACAGCGAGTGATCCGCACTAGTCACTGCAGGAACCACCGTCG
TCGGAGCGCAGGGAGAAATGGCAATGAGGCCGCTGGTCGTGCTCGCCCTGGCCGTGGCAG
TGGCACTCGCCGGCGTGGCGCTGGGGGAGGGGGCCGGCGAGTGCGGGAGGTCGTCCCCGG
ACCGGATGGCCCTGCGCATGGCCCCGTGCATTTCGGCGGCGGTGGACGAGCCGGACTCGG
CGCCCTCCAGCAGCTGCTGCTCGGCGGTGCACACCATCGGCTTCGACAACAGCTGCCTGT
GCGCCGTCATGCTGTCCGGCACCGCCAGGATGGCCGGGATCAAGCCCGAGGTCGCCATCA
CCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGGTACCT
CCCAACACATCACACGCACTCTCTACTTTGCTAACCAATCATCTGCATGCTGCAAATAAT
GTCGTAGCAATGCTGAGTCTGGTTTCTTTGGTTTCACAGATTACACGCTGCCTTGATGGC
CCAGCCGCTCTGGTGTTAAATTAAACAAGGAATTCTTTCATAACCGAGTGCTGCATGCAT
GTACCACTTATGTGGGGCACTAGGGACTCCATCTCCATGGAGGTGCCATCATGTGATGTG
TGCTTGAGGAAATATGTCTCTTTCCATAAGCATGTAATAATGTTTCGTCTGTGTTAACGT
GAACAAACGTCTCTCTGCGATTTCTGTTGTCATATATACAAACTAGCGACGCGGCGTGAA
TGCCTCGTTTATATTTCAAATATGTACTTCAACTCCGAGATCCAATGATATGCAGACTTC
CCTCATCATCGTTTTATGTTTATGTTTTTAGTTTTTTTTTTTATGAAAGGGACACTCTTT
CACAATGGACACTCATTTGCCATTTGTAAGGGACCTACAATTTGGCCACCTTCACAAGTG
GCGCCCTAATGTGATAGTGTTCAGAAATTCGAATTGCCAGTTGAGGTCCCCTGCCTAGGT
GTGAGCCCCGTAATTGACACTCCACGCAATTTAATTGCTTCGTGTGCTTACACCACCCTA
CCAAGTAATGACAGAAAGACCTGCAAAGAATCTCTAAAAAGGTGGTTTTGTTAAATGTCA
AGTGCCTGGAAGAAAAAATTGGGGCCAGTCAAATTTGAATGATACCAAAGGCAGGGGCAA
TGTGAGGAGCGCAACGAGCATCGACCTTGGTGAGACCGAGCTAATACGTCACCAAAGACT
GGGACGACAACAAGGAAGCAGGACAACGCCCACCTACGTTGGGGGCGGAGGCAGGCAGAT
GGGGCAATGCAAAGGTCGGCAGTTGCACAGGAAGAAGAAAGAGGTTGGAGATGACAAGTG
TGATGCAATTGTTACAATAATTAAACAGGCCAAAAATTCAAATGACACAAAAATAACCAG
TTAACTGATAAAGAGGCGCTCCCAAAAAAGGCATGCAAAGAATCAACTAAAAAGTGTTCT
TGTTTGTGCAAAGAGGGAAAGCAAAGACCACAAATTGAGGAGCCTTTCAGTTGAAAGGGA
ACTTTGGAATAACCTAGTGATCCATGATTGGTTGTTCAAAAAGTGGCCTCAAAGTTCAAA
CACGCGGAGCATGCATTGCTTGTCCAGAAAAGTTTAATATATACAGCATACAACTCCCCA
GCTACCCATGGTACATTTTCAGTGCAACCACCCATATCACTCCCTTCAGAATCATGTTGC
TGCCTGATACTGCAGAATAGACATCCAGAAAAAAAAAGACACGAGCAGGATCCGCAATCG
TATATGCAAAACTAAACGTCGCACGTAGAGAGAAGAATGTTGCGAGGAAAAGTATACGTT
GTTATCCACAAGATGCACCCATGGTAAACCTCAACAAGTTTCATGTTCATAGAAACAATA
TACAGATCATTCCATTTCTCAGATTGAAGATCGTGCATCTAAACTCACGTATCAGCAGTT
AAACATTATGCCCTGAATATCCAGAAATACTCTCAGCGGTGGATGGATCACCGTATAGAG
ACTCTGATGACGAGGCCAACTGCACTGGACAACTGGAGAGCTTCCTGAGAAGCCAAAAAA
TAATCATGGCTTAAGAAACACAACCATTGCCAGGAAAATGGTGATGATATTTGATAACAT
TTGTAGACGACGACAGACGGATGAATACTAGCCATTTCAAAAGTAACCTCAGAAAAATGC
CCTTGTGCCAGTGAATCACCGGGATTAATGTTTGAGCATACACAACTACTCCCTCCGTTC
CTAAATATAAGTCTTTAAAGAGATTCCACTATGGACTACATACGGAGCAANNNNNNTGAA
TCTACACTCTAAAGTATGCCTATATACATCCGTATGTAGTTCGTAGTGAAATCTCTAAAA
AGTCTTATATTTAAGAACGGAGGGAGTATTAGGTAATCCTTTTCTGAAAAAACAAATCCG
CCGGTTTATTAAAATAGCCTGCAAGTAGGCTTCCAGGTACCTTGCATAAACTATGAACTT
CTGTAACCACAAAAAAAAGACAATGCTACCCTATTTCAGTATTCTTTTCTCCAGCAGACA
ATATATTGTGCTCCATACAATAGTTTTTTCTTTCTACAAAGAAAGTCCAAAAAACAACTC
GCTGACTTGAAAACATCTAGACTTGTGAGATGCCAGAATTCAAAATAACACAATGTACTT
ATATACTCCATGAGATTAAAAATAAAGTTGAAACTTCAAAGAACGGCGCAATTGGAATAT
GTTATGCCAGAATTATTTCATCGGTTTATTAAAATAACACAATATCCTTATATACCCCAT
GAGATTAAAAATTATTTCGTCGGATTATTAAAATCAAGTTGAAGAGCCTAGTCTCTGTCC
CAAGTTGCATTTTGTATAGAGCAACAGGTGGTGGCAATTCGTTCGAATTTGTTCCTCTAA
CAATATGTAAACAGAAAGATAAGCTACAGTAGTAGGAGAATCATAATATACCATAAAACT
ATGAGCAGCATAGGTTACTATAGTATATGCCAAAAAAAATGGGGCTAGTAGTGAACCCAA
CTCATTTATGTTATTTCTTTTCTTTTGAGGTAGACTCATTGATGTTGATAAACTGAAAGT
GATAGAAATATGATTCTTCGCATATTGAAGCCAACCTAGGCTGTTCTATAATTTTAAAAC
AGACTGATAACAACTTCTTGAGACCTAATTATTGATGTTGATAAACTGTAAGCGATAGAA
ATATAATTCTTGGCATATTTAAAGCCAACATAGACAGTTCTATTAAATTCTAAAACAGAC
TGATTGGAGCTCTTCCTAGGACTTAATCATGTCACAGGGTCCCCCTTGAAAAAAGGAAAC
AACGTTATGCTCCCAGAATATGTTCAAAAATGAGTTATCCTAGTAGCTTCCAACAATTTT
ATTTTAGCCTCTAGGCCCTACTACAACTCTAGCCACCTCACTCATGATTTATGTCAATAC
TCAATACATTGTAAAAGACTCTTTTGAAGCAATATAATGGCCCTGTTATAGAATCTTCCA
GGGACTTTTAGCGACTGCACAGGCTTGAGATCCAAGAGGCATTGAACAGATTCCACATGC
AATGTTAACTACATCCATAAATATGCTAAAAATGTACTCCATACAACACAGAAGTTACTA
GGCTTGCTTGGATAACTGGAATTGTAACATACCATATAGATGTGAAAAAATCAGTTGCTT
TAAGAACTCACCAAATGGGACAAAATATTTCTTCTACTCAGCCTTCTTTTGTTTAGTTGG
TTGCCCAGTCTTGCTAATGACGGTATTCAAGTGCCTTGACAGTATGCTGTGTGCTAAACC
AACCTTTTCATCAATAACCTCTTGGTGCCTCTCATATACCGGGGGAACCAACAGAGCGAG
TAGTGCACCTGAAAGAAAGCCCAAATGGTGTAAACTTAGTGTACAAATAGTAATCCAAAT
ACTGTAGAAATCCAAGAGGGCAAAAAGAAGTTGAAGAGCAAGAGGGCAAAAAGAAGAAAA
TTCATTATAACTCACCAATGTAAATGAGCGTAAAGAAGTTGAAGAGCATCCCAATACATG
AAACCACCCATAGAACCATTATAACCTTTTGCATCAAGCAGAGCATGAGACAAAAGGAGG
TCGTACATGAGGTACTGTACAGCAAGAAGTTTGTGTGTGTACGAGTATATGAAACGTGCA
CACACAAACAAGTGATGGGTACACAAGAGAGATACCTTTATAAAAACTGTCCTGTCTCTC
TTGATGGCAATGTCATGGGCAACAGCCAACACCTTGTTTACCCATACAAGAGCCCGATCT
GCAGCTTTCTGAACGACCACATCTGAGACCTCTAGATTAGGCAGTGGTGGAAGAGGTCTG
CAAACAACAGTACTTGTTATTGCGCTATTGCATAAATAAATGAAGTAAAAAAAACAATGC
TACGCAAAAATCAAAGTAAGATACACTGACTAGTTTATAACTAGTCTCCATCTAGTTAAC
AGAAACCCACGTTGTGACCAATTGCAGCAAGCTCCTCAAGGTAGTTATGGATTTTCCATG
TTGAAAGATAAACGTGGAGCACTTAATAACACAAATACTCCCTCCTTTCCGGTTTATAGG
GCTCAAATCTAAAATCTCATCAACCAAGGTGACTTGTGAGTGGATGACACTAGTTTTAAC
TAGCCAATGAAATAT