morexGenes - Barley RNA-seq Database

Contig contig_65210

Source Contig contig_65210

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_65210 (4019 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_65210

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74134	2	913 bp	MLOC_74134.1	Available	Available	None
MLOC_74133	2	1050 bp	MLOC_74133.1	Available	Available	None

CDS Structure of MLOC_74134

CDS Structure of MLOC_74133

Contig Sequence (4019 bp)

>contig_65210 4019 assembly3_WGSMorex_rbca.fasta
AGGATACAAAAACGCGAGTTTAATGTGGGTGATTATGTCTTGCTATANNNNNNNNNNNNN
NNNTTTTTTGCAGGCAAACTTCTCTCCAAATGGGATTGTTTCCTTACATCCGTGAATGTT
GAAAGCATTATATCTCAAAATTAACAACACATAGGGTAATTTTCCAAGAATTGTGAATTG
ACAAAGAATCAAGCATTATATCTCACGTACTCCCGTGAATGTTGAAAGCAATATTATTAA
TATCATAACTTTGGAGGAGTACATAAGAGATGTTCCCCAGCCTGTTTCAGACTCCGAAAA
CAGAGATGTATGCGTTACGGTAAGTAAACCGACTCTAAAACTTTTCCAATAGGAAATTTT
CTCCGTTTTGAAATTTTTAGATAAATACTCCATCCGTCCCGTAATTATTGTCGCAACGAC
AATTTTTTGAAAACCCCCTTGAGTTTATCCCGACACAACCCGCACTCCTTGCTGTTCCCA
CTTGTCTTCTCTCGTGCGAGCTTCCCCATTCCCCTCTCCGCCAACTCCGTCGACGGCAAC
TCCCGGCCAAATCCGGCCAGTCCATGCCTTGCTAACCTTTACCGGCACCCTCTCCTTTCC
CTATACCGATTCCACGGCGTCGATTCGCAGCCCCCACCACAAACCCTGGCGACCAGAAGC
CAGAGCAGGAGGAGAAAATTTTAATCTTTGCACCCATGGATGGCGGCGGCGCGGCAGCGA
GTGGTGGTGATGCACGAAGCCGTTGTGGGATCCAGCGGCCACGGCCCACAAGGACGTCGG
CGAGCAGGCCGCGGGTCCACGGGCGCGAGACGCAGAAGTACGTCCTCGGGCCTGCAGGAC
CGTCGACAAGCCCGTGCGGGAGCGCCGCTACTTCTGGCGTCGTCTTCTTCCTTGCTTGCT
CTGCTCTCATCTCTGGTTAGTGCCTGGCCCTGCGCATCATCATTCCTGTTAATTCTGACT
AGATGGGGAGTACTAGTATCCGAAGACCCACAATAGAAGTACTAGGATCTGCAGGATCCA
AAGACATGATTTTGGAGTACTAGGAGTTCTAGGATCTGAATTCTGGACTACTAGGATCTG
AATTCTGGAACCCACCATATTCCTGTTAATTCTGAATTCTTACATATGCATAGATTTTCC
TAACTAGCAACTGCGAATTTGAAGTAAATGGACCCATCAAAAGCTTGTTTTTGTGTTGTG
GGACATGTTCGAACAACACAAATCAGGTTTATGTAGTGGGTTTATTGTAGTCAATCAATG
TGTTCTTAATTTGTTTGTAATCGCAGAATGTGGTTCAGATGGAGTGCTTATCTGCATTGT
GCATTTGGACCAGAATGTGTACCTCTCTGGCCTTGTAGCTCGTGATATTTTTCATCCTGA
AGATATACTCCGTTTTTGGGTTAGTGTTACTAGGATTCAGTCTCTCACAAACAAGCCATG
TTTCTCCTGCAGCTCCTTGCCATGAGGTCTGAAGCGCTTCTCCGGCTCAACAAACTAGAA
GAGGTGATTCATATGTACGGGTTTGCTGAAATTGGACAGTGCATCTCTATCTTCAATGTC
CACCAAACTGTCAGGCATGGTAGCTGATTCATATGTACATGTTGTCCAAGCCCTGCACTG
CGTCCACCTCAACGAATGTCGACGACCAAGAGCTGCTGGCATTGGTCCTGTCTTAAGGAA
CTGCTCACTCGAGTCGATGTTGACGCTGCATCAGGGGAAATATTCAGAGATCAGCAGAGG
TCAATGAACGGCTTCATGGAGTGGACAGAGATGGTGTGTCGGTCAGTCACTCACTAGGTG
CAGTCTAAGGCTGAAATTGATTTCTCTTTTGCAAGCGGCGTTGGTAGCCCTTCCGAGCCA
AGAGCCTTAGACATCAAGTCTGGTGTACATTTTTGTTTAACTAAACGTTGCTGGACCTGT
GTAACTCGATGTAAACTGGTAGATGTAAGATGTGTGAAACTGGTAGAGCAAGTGTAAATG
TCTGTAAACAATCAGTATTGTACCCTGTCTAGATATAAAGTGTACTGCTTATTGCAAATA
AGTTTGTCCATAAATTCAGAAATCAGTATTGCCCATAAAGTGTTTGCTTATCTTGTCTGG
ATATAAAGTGTACTGCTTAATTCGAATAATTCCAAAAAATTGAACTAGTCCAAACAATTA
AAATGAATTCAGATAAACTCAAGTAATTTCCCAACGGCAACAAATATTTTCAAGACGGAG
GGAGTACTTATTTTTAATTTGAATAATTCCAACAAATTCAACTAGTCCAAACAATTAAAA
TGAATTCAGATAAATTCAAGTAATTTCCCAATACACAAGATTACACAAGACATACACAAG
GAGTACAAGGATTACACAATTCATATTCACTATTCATCTTCTTGAAGTATCCAATTTATA
ACTTCATCCTCTTCCTCTTCATCTTCTTGAGGCATCCAATTCATAGCTTCTTCATCTTCC
TCTTGAGGCATCATGTTCAAATCTATACCTTCATCCTCTTCCTCTTGAGGTACCATGTTC
AAATCCATACTCCCACAATCAATGAAAAAAGAAGGAGAAGAAGATTACAAAGGGGGACAC
AAAGTGCATCTAGTATATGCATCTCAAAAGAATATGCGCATGTTAAGGAACATGGACAGT
CTAGTGAGTGGAAACACAAAATTTGATTGAGGCTATGCTATGCAGCCATCAGTCACCCCA
CTGTTTCCGTTTCGACAAAGCCGCTTCTCCTCTTTCGATGTTCCAACCTCCCTCTGTACA
TTGGCCCCTGAGCTATTCTATACTTTGTATTGTCCGTGTACTCTGTTCAAGGAATACTTG
CAGCCTCTTTACAATAGTCATTGTCGCTTGCTTGTGTGGCAGTTAGATGTTGACCAAGCC
TCTTCGTGACACTCCATCCACACCGATCTCTCAATCTTCATGATGCTCTGGGTTCTTCCT
CAGGATCACAAAGCCCTCCAGAACTGGTGTCAGCGGAATATATCTACACGCAGGAATAGC
AATAAGCTCGAGCAAGAATCAAGTAACTGAACATAAGATTCGTCTGAGAAACGTTCTGTA
GTTACTTTTCAGTTGCTAGGTCAGCTCGCTCCCGTGCAGCGAGCAATACAGGCGTGCTCT
GCGTCTGGAAGTCAGTGATGGTCCTGGGACTTCCTGCCTGAACGACCACGTCGACTGCTT
GGGTTGATTCACACGTTAATGACAGCGAACACATCTTGAAAAAACCCGTTATGTTCTCAG
AAGTAGGTTATCTGCAGCATGTAGATGCTAACAGCACAGTTGATAGAGATATTCTTCTAA
GAATTGTTTACGACAAAATCTATGATTCAGCGAGAAAGCTTCAGGCAGGCGGTGGTGCTC
TTATTTGGCAGTTGATGGTCGAAGGAACACATACTCCCTGGTGGCACGGGATCATCCCTC
GACCTATAAGTTGATAACAGAGCAGTCTTGTCGACTGCAAATGCTGTACAAGAATGACAG
AGACCCTGACTGGCAATGGCCGATACAGCCCTAGGAATTTTACTGCCATTGATACCGGGA
AATCCTGGTTCAACAAACAGAAACTCGTCTTCAGCATTATGTTGAGAGCAAGACTGCCTA
TAGAAGCAAACAACTGACTGATAGGATGTGTATAGCAACAGCACGTTTGATATCATCTGT
TAATTTGGTGAACAGCAGCAGCAGTTTCAGGTACCTTCTTCAGGTGCACAGCGGCAGTAG
CTCCAGCAGAGGAGCGGCAACTCCAGCAGAGGAATAGCAGCAGCTCAGACAGATGTCGGC
ACAGGTTCCTGCAACAGGGGAGAAGGAGCAGCACAGGTTCCGGCGACAGGGAAGGAGCAA
CACAGGTTCCGGCGACAGGGGAGAAGGAGCAGCACAGGTTCCGGCTTGGGGAGGATGCAC
GGGAGCTCGAGGATGACCACGGGAGCTGGAGGAGGAAGTGGAGGAAGGTTCCGACGCCGG
CAGGAGCTCGAGGACGACGCCGGCAGGTAACCGCAGCGGGAAGGGATCCGGCGGCGCAA