morexGenes - Barley RNA-seq Database

Contig contig_6500

Source Contig contig_6500

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_6500 (4969 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_6500

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74035	2	2189 bp	AK375294	Available	Available	None
MLOC_74034	2	1170 bp	MLOC_74034.2	Available	Available	LOC_Os09g32310.1, FRAME:-1, EVALUE:8e-13, 13109.m03217 protein expressed protein

CDS Structure of MLOC_74035

CDS Structure of MLOC_74034

Contig Sequence (4969 bp)

>contig_6500 4969 assembly3_WGSMorex_rbca.fasta
CTTGAGAGTGTCTCTCTAACCGTGTCAGCTCTTGTCTTCGTTTGTGCACTGCAGATATTT
CGACCATGGCAATTTATTTCTTTTCATAACCTTTCAATATTGCATTATTATCATCAAAAA
CTAGAAACTTGTTGTCATGGCAACTAATTTTTTGTTGCCATGACAACTTAAATTATGCAT
CCATGGCAACTTAAAATACCTTGTTTTGTTCTTTTTTATCATACCATAGCAAGTTCAATA
TGTCCTTTTTATTATTATTATGCAAATATGTAGCCAATAATATTTAATTTCTTTTTCTTT
TGTGGACTGTGGCATTGTTTCGTTGGTTTCTTAACTGTAGATATAATATGGCAATTTTCA
TACATTTGGGGTGATCGTTTTCCTGTTTATTAGTGGGCTTTGTAGGCTTTTGGGAGCTTG
AGAAGAAACAACTGTTTAATGCTTACGGGGTCCGATGGGTTTTTTGGGTCATGCTAGCGT
AAGTTGTGGGGCCCCATTCTGCGGGGCGGGGTTTGGGGGATACACACGACGTGACCGTTC
CGGGGGTTCGTCAGTCGTATATTACGGTTATGATGCGTTCGATCCTGTGTGCAAATTTGA
ACGTGCCAATGCTGATGGAAGCACCGTTCTCTCCATCCGTTCCTTGAGTGAATGACACAG
AATCTTTGCTCCCACAACGTGATTTTGGACGGCACGACCTGTGCCTGCAAGCCCCATCTT
ATCCCTCACTACCCCATCAAAATCGCACTTGTATGGCAAATTCTTTATCGACGGCATGGC
AAATTATATGTGTACCATAGTTGTTCCCTTACAATGTAGCATCCACTATGGGAAAATCAT
TGCATGCCAAAGGTTTCGAAATGTTTTTTCACGGGCACTCAGGAACCAGAGCATTTGCCG
AGTGCCGCCCAGAAAACATTCGGTGAACAGGAGAACTCCGGAAAGCCCGCCCTTTGCTGA
GCGTCGTTCAGAATACACTTAACCAAGCCAAGACACTCGGCAATAAGGAGATAGGACACT
CGCAAAAGAGGTGGTACTCAGGAATGCATGTGCCACGTGTCCCATCCATTTGCAGTTGGG
TGAGTCATCGTTTGCCAAGTGTCCCCTACCAGTCAATCTGGCATACATGTGTGTATTTCT
TCTGTTAAATGTATAAATCAATTTATCTTTATGGGGATTAAATGCATAAGCTCTTTGCCG
AGTGCCTAAAATATTACTCCAAGAGAGTTTAGATCATTAAAATAGTGATCTAAACGCTCT
TATATTAGTTGAAAAGAGGGAGTATGATCCTATTCTTTCCACCACATATTTTTTTCACCC
TTTCTTTCCCGCCTACATTTAAAAAGAAAACAAAAAATGGCAAAAAAAACTAAAAAGATA
GTGATTGGTGGTAGCCAACCAATTGGCAATGCCAAATTTGGGACCAAATTGTAGATTACT
GTCAGAGACTACCAACTTTTACCGCCGGCCATTTTTCATGAGCCACGCGATAGGCTTCCA
GTCAGACATAAAGGAGCAGAACTCAACTAATTTGCACCCTTTGGCTGATATTACAAGTAA
ACAACTTTGAAGGCCAAGCACATACATATATGTCAAGTGACATTATGAACAGAGAACGCC
TCAAGAAATTGAAACAGTAGGGAATTTGACAGTACAAGATGGGGAAAAAGGTGGGCCGAT
ATTTTCTCGACACTACACCATCATCACTTCGTTGCTTCAGTCAGATGTTGATATTGAGTA
ACAAATTCAGGAAGCCTATGCAAGGCTTCTGAAGATGCATTCTGAAAAGAGAGAGCCATT
ACTCCGTAAATTGAAAGAGAAAACCATGATCCCAAATTGCAGTACACACATAATCTAGCT
ACAGTATGAGGTCCATAGCAATTGAGTACTCTGGGGCTATCAATAACTAGAAACTGAAAT
TACGATTGACTGTGCAAAGTCATTAATCTAGCAGCTGCGAGCGTTCTGAAACTTACATTC
CTTGACCATACCTGTCAACAGATTACTATCTCCACAGATGAGGAGGATCCATTCGCGAGC
AGCTCCTTAATCCGACGCCTGCTAGCTTCATCCACCTGGGATTTTCTATCAGCGTCGGTG
GCATTGCAGGCCCAGAATGGGCGGTAACCTTGCAGCTCGATTTTCTTTAACCCCACAGCT
CGTTCCATGACAAGCCTTATATAGGTTGTCACATTGTCTTCCTCCTCGAACCCGGACATC
TGGAGCAACTTCAAGTTCAGGTTCTTAAAATCCTTGGATGGCTCCCGCACCATGTTGGTC
TTCTCGGCACTACCCTCGGGCATTCTGAGACATGAATGTTGAGATCGAGATAACTTCATG
CAAGGACATAGAAAATAAATACCGCTTTTTAGTTAGTCTTGCCACCAAATCCATGCAGGG
CAATGTAACAACAATTTCAATCATATTACTCCCTCCGTCCCAAAAATTTTGTCTTAGGTT
TGTCTAAAAGTTGATGTATCTAAATACCAAAACGTGACTAGATACACTTATATGTAGACA
AATCTAAGACAAGAATTCTGGGACGGAGAGAGTATAAGTTTAGGACCCTGTAGGGAGTGT
TTGGAGGAATTAGCAATGAACTAAACATTAGGTAAAATACAACACGCGAATATTCTTATA
GGATTCATATGAAATTACAGCACTACTTCTAATAACTGCGATAGATTAGAGTTTGGTGAG
TGATTAAAAATCAGATCAACTTCCTGGTATGTTGTTGATGTCGAATATTTTGGAAATACG
ACATACTAGAATAAGTCACAGCCTCTGAAATTCTCAACAAATTAAAAGAAGCGAAGGTAA
CAAGCCATAATCCAAAATTCAGCAGGGATAGTGCAGTTTCACGGGTAAACAGGGTCCAGA
TCAGATCACACAGGAAAGATACACATTCAGCAAGTTTCTGAATATAGCAGTGAGCTGCTT
CAGATGTTCCGGCTGAATCCAAATCTGCAGCAAGAAGAAAAACACGATAGACAGATAAAA
TTAGTAGGGAAGAACATATGATGTGTAGATGCAGAAGAAATTCATGTGGTGCGTAGAAGT
TAACTTACAATTTGGCAGAAAAACTGGAGACGTGGTATGGTATGTTGTTGATGCCGAACA
TTTTGGAAACATGACATACTAGAATGAGTCACAGCCTCTGAATAAATTAAAGAAGGAGAA
AGCAACATGCCATACTCCAAAATTCTGCAGGGATGGTGCAGCTTCAAGGATAAACAGGAT
CCAGATCAGATCACACTCAGGAAAGATATCAGAAAGATACACATTCATCAGGTTTCTGAA
TATAGCAGTGAGCTGCTTCGGATGTTCCGGTTGAATCCGAATCTGCAGCAAGAAGAACAT
GATAGACAGAAAATTAGTAGAGAAGAACATATGATGTGTAGATGCGGAAGAAATTCAGTG
GTGCATAGAAGTTAACTTACCATTTGGCAGAAAAACTAGAGATGCAGTATGGCAGGTTCC
TGGCTTTCCTTGATAGGCACTCACTCACCGAGAATAGCAAATATCACACGAGCTGAACAA
AGCAAATCCTCCATACAAGTACGTTATATTTCAATGTTTGGTCATACAGTAGTTAGCACA
CACACAGACTACATTAGCTTCACTCTTAACAAACAGTACATTTTATCTAAGTTCTGATGT
TGGTCGGAGCGAGTATCCGTCTCCTCTGAACTGCCGTCCCCCATTCCGGTCAACCGAGCG
GTGCAATTCGGATGTTGGTCGCAGCGAGTATCCATCTCCCCTCGGCCGCCGCCCTCCTCC
ATCTTCTCTGTTGGCGTTCATCACAGGACGAGTACTGTCTAGCCGCCTCGCAGCCCCACT
TCCACCACTCCTGAACTTACTTTTCATATCACTGTTGTAATCTCTGCTGCCATTGCTGTT
CCTAGCTTCCTTCTTTTTTCTGGGGTTCCATGTCGGCTCCTCCAAGTCTGAGGGAAAGCC
GTTACCAAATTGGCCCCTTTCATCACCATTATGACCCTTGGTGTATCTTCCTGGCCTCTC
GCCACTGTTGGCATTAGGCCTATATTTCAGACCTGCTCCACCTCCTCTGTTCTCACTTGG
ACTAAACCTATTCTGGGCTCTCCATTTGGGTTCCACTTTGTCATCCCTTCCACTGTCTGA
ATTTGAATCAAATTCACCACCAACGCGAACCTTCCTTACCACATTGCCATGGCTATCGTA
CGAGAGCTTCCACTTCACCACGGTGTCGACTGCGTCCTCTCTATTCCCTGCTCTTGATTT
TGGCTCAGAACCACGACGGCTCACCTCCGACTCGGACAAAGAACCACCACCTATTCGGTC
CTTCTCAATGGCATTCCTGCCCTGGGCATTCCAAGGCTTCCATCTTGCGGCGGGAGGCTT
CCTTCGACTCCCACCGTTTCTGTCTGACCATCTTTGATCAAGATGACCTTTACTTGCGCC
TTCTGAATCTGAAAAGGGACCATGACCACTCCGATGCCTGCCCCTCTCACTCCCAACACG
CATAGCGCTTACTGTTTCGCCATCCCTCCTTCCATCTCGCCTCACCACAGCTCGTCGTTG
GTGACCAAAACCAGCATCCTCTTCGTCGTCGTCTGAATCAGAATTAGCATCATCATCATG
AATCCAACTCCTGTGGCTCGAATTGTTTCCATCTCCAGCTTCCAAAGCAATCACCGGCTC
CCACATCCCATCCCTCTCCATCAGCTGGACGGCAGGCTCGCTGTAACCATACTCATCCTC
CACAGCCTCATTCCGCCGAACACCCTGCGCGCCCTCGGCTCCGGCCCCGGCGCCGAGGCG
GGCGTAGGGCTGGACGCTGTGGACGGCGTTCCTGGGGAAGAAGCGCGCGGAGGCCAAGCC
CGTGTCCGGGGACGCGAAGACCCGGGGCCCGTCGCGGTCGTTCCAGAGGTCGACGCCGCC
GGGGCGGTGGAAGCGGGCGGCGGGGCCCCACAGCTGGGACGCGGCCGCG