morexGenes - Barley RNA-seq Database

Contig contig_64954

Source Contig contig_64954

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_64954 (5043 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_64954

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_74020	1	602 bp	MLOC_74020.1	Available	Available	None
MLOC_74019	2	1047 bp	MLOC_74019.1	Available	Available	LOC_Os03g15960.1, FRAME:+3, EVALUE:8e-53, 13103.m01885 protein hsp20/alpha crystallin family protein, putative, expressed

CDS Structure of MLOC_74020

CDS Structure of MLOC_74019

Contig Sequence (5043 bp)

>contig_64954 5043 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACAAAAGTATTGTAGCTACCAAAGGAAGGTGTAGGCATTGCATTG
TTTTCAGCATTTCCATGCATTGGATTGCCACTAACACTAGCATACACTCGATGTTGCATC
CAAGGCTTTGCATGGTATGGTACTTGATTTGAAGCACCAGAAGTTAACCATTGTCGTTGC
TGGCTTATTTGAACCCCCTGCATTTTTAATTTTCAAAAATTTGGTAGGCAAAATCAAAGC
ACAAAATGCATTCCAACACTTCTTTGTGCCAGGAGACTAACCTGACAGCTAATAAGATAA
GCTCCATATGCATCAAAAATGGCTACAAGGAAGGAACAAAATTGTCAGGTATGGACGTTG
TAACTACCAACAATTTTTTTTCTCTCACTATGTTGCATGAGAAGCTCTTGTTTCTATTTT
TACATAGATTTTGTCAACCATCAAAATGCATGGAAGCCTTTTATTTTTTGTCACACAAAG
ACTAACCTGAGAACGATATGTTTTTTACTTGTTCAAAACAAATAATATTTTTTTTGCAAA
GATCTCATTTTTTACTTCTTTTTTCTGGCAACATCAACACAGAAGGTTTGGTAACCCCCA
ACCAACACAACAAAAGAGAAATTGTGGGGGTGATGCTTACAACAACACACATCATAACTA
GATCTGGGGGAAGGATGGACACATACCCTGGTGAGTGCTCTGTGCTCTTTGATCTCTGCG
TGGGTCCATGAAGAGCTCCCTTGTCTTTATCTTCTGTCTTCTCCAAATTTTTAGAGTTCT
TCAGAGTTTCCGTTCTTTCTGAGCATATCCACGCAGTTCTTCTTCTCAATTTTGAGTGAT
TTGTGGGGAAAGATGAGGGACTGGCGACGTGAAGGTGTGGGGAGAGGGGAGGAAACTGAT
TAGGGATGGGTCTTAGGTTCCTCTAGGTTGAGTTTTCCCTGCATGATCAATTGAGAGGAA
CATGAGAGGGAGAAAAGCAGAGCAGCTTTTCTATTGTGCGTGCACTGAATCCTTTCTTTT
TTGTCCTCTTTTTGCTTTGTTTCATCAGAAGAGAGAAGATGGCCAGGACTGGCAAACAAC
ACACAACCCAAAAGGACCCACAACCGAGGACAAACACCCCACAAGATAAATAAAAATAAT
TGGGCTTCTTTTCTTGTATTCACTTTTTGCTTTGTTTGGTTAAAAGAGGGAAGATGTTGA
GGACTGACAAACAACCCAAAATCCAAAAAATTCCACAACCCCAAAAAGGCCCACAACCAA
GGACAAACAACCCATAAGACGGAAAAAAAACAATTGAGCTTCTTTTGTGTTTTCAAGGGG
GGGAGCCTCGTTCGAACTGGGAGGGGGTCTCGGAGGGTGATCGGGGCACGTCAGATACAC
GTCATCCAAATGAGACCGATTTGTTTCTCAGCCCAATGAGCCCTAGGCGCTCCCAAAAAT
ATACACCCGAAATGTGTATCAAATGTGCAAGATTTCAATATGTTTACAAAATACTGGAGT
AGTTTTTTTGTAATAAGGACCGGTGCAATTTTTCCGGCACAAAACAAAGGGCCCAAAACA
AAACAGCCCAAATCGAATGCAGAGTCGAGAGGCTGCTGGTGTCTTCTCCGTGATACGGGA
CCAAACCAATTCCGGCCCAACCCACGGGCACAACCTAGTGACCTCGAGTGTTCACGGGAA
GACGAGAGAATTCTCCAGAAGCGTGCTTTCTCCTTCTCCGCCGAATCTTCCCCAGCCCTC
TATAAATTCTTCTCCGTCCCGATCGGCAGAAACCCAAGAAAGACTGAAGAAAGAAGCACC
GATCAAGAGCCCCCAGAAATCAATCCCTCGCCCTTCCGCTTCCAACACCATCCAAATCGT
CGATTCATTCCACCAACCCGAGTACCCGATCGACAATGTCGCTGATCCGTCGCAGCAACG
TGTTCGACCCCTTCTCCCTCGACTTCTTCGACCCCTTCGACGGCTTCCCCTTCGGCTCCG
GCAGCAGCAACAGCGGCGGCAGCCTCGTCCCGCGCACCTCCTCTGACACGGCGGCCTTCG
CGGGGGCGCGCATCGACTGGAAGGAGACGCCCGAGGCGCACGTGTTCAAGGCGGACGTGC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTGGAGGACGGCAACATCCTCCAGATCA
GCGGCGAGAGGAACAAGGAGCAGGAGGAGAAGACGGACACCTGGCACAGGGTGGAGCGCA
GCAGCGGCAAGTTCCTGCGCAGGTTCAGGCTCCCGGAGAACGCCAAGGCGGAGCAGGTGA
AGGCGTCCATGGAGAACGGCGTGCTCACCGTCACCGTGCCCAAAGAGGAGGCCAAGAAGC
CCGAGGTCAAGTCCATCCAGATCTCCGGCTAGGCGTCGGCGTGCTCGCTGCGCCATGAGA
TGGACTGGCGACTGCAGAGTGCAGAGCAGTGGTCGTCGTGATGAAATAAAATGAAATCAG
AGTCCGGCCGTCTGTGTTTGCGCGGTAGTGTTGTGTGCGAATGGTGCGATGTTGCAGCCA
GTGTTTTGAGTCTCTCGTGTCTGTGTTTCCAGTCCAGTTTGTTCGTCAGTCTGTACTATG
TACTCCATCAGCAACTGAGTAAATCTATTGCCTTCTCTGCTAATTTGCGAACCATAGAAT
GTTCCTAACTCTCGCAATTGAATTCGGTATGAACACTGAACATTTACGGTGACACTGATT
TTAGTGGGATGCCAAGGTTGGAGCTTAGGCGCCTCCCAGATGATTGTGGTAGGAGGAGCA
CGGCGAGCGGAGCAGCGAGTGGTCCCATGTCTTCCCGGTCGTTCGTCAGGTGGAGGAATT
CGTGGAGGAGGGGACGAGGAGCTCGAGCCGTGCGTCTCGGGACCTCCTATACGTGGCTCG
TTGCGGCCAACTGCCGAGCAGAAGCACACCTGGTCGCCCGACTGGGCCGGCCCAGATTTT
TTTTCTATTTTTTCTGTTACTTCTTTTCTTTTCTGCTTATTTTTTTTTCCTTTTCGGTTT
TTTTCTTTCTTTTCTAATTTGAAGCAAAAAAAATTTAGGATTTGAAGAATAATATTTGAA
AATCCAGTACATTTTTTGAAATAGCAAACATGTTTTGAAATTTTAATAAATTTCGAAATA
TGAACAAATTTAAAATTCACAAACAGAATTATAAAACCGCGAACATTTTTCTAATCTGAA
AAAAATTGAAACCATTAACAGTTTTTAAATTGTGAACAAAATTTGAAACCATAAAACATT
TTTTTAAATTATAAAAATTCGAAACATGAATAAATTTCAAATTGTGAAAAAATTATAAAA
TTGTGAACATTTTTACAATTCCTGAATATTTTTAAAATTCCATAATATTGTTTCAAAATC
CAAAATATTTTTCAAATTTCGGAACGTTTTTTTAAAAAGGTGAAATATTTTGATACAGTT
TCAGAACAATTTTTCAAATTATGAAACAATTTTTAAAATATCAGCACATTTTTTGAGAAT
CCGAAATATTTTTTCAAATTCCGGATTTTTTTACCAAATTCGGAACATTTTTTAAAATTT
TAGAATATTTTTTAAATTTCTAAAAAATTTCTATAAAAATAAAAAATAAAAACTGGTTCA
GGAAATCTTGTAGAAAGTTTTCAAAACTGAAAAAACCGATTGAAAATCTTTAGAAGGTTC
CCAAAACCGGAATTGCTAATGGACCGGCCCAAACCCGTCGCTGGCCGCCTATTTGATGCG
TCAAATAGGGATTTTTGTGCGTCTCGGTGTCTTCAGCCATGTTTTGCGCGAGCACTCCGT
ATCGTCGAAAGTGCCGCGGGGTTCCGGTCCAGCAAATACACCAGCTAGCTAGGCCCAAGT
TCGCTCGTGCCACGGCCTCGCTTCGTCCCCGCCTTGAGCCCCCGGGGCCCTTTGTGTAAA
CCAGGGGATCCCCCGTGTGTTTAGGCATTTTGGGGGCAAATTTTCCCGTGTTAGTGAATG
ATAAGAGGGACCCATCCGTCTAAAAACATTAAATAATAAAAAAGCTATAAATATAATATA
TAATATATATAATTAATTAGTTAAATTATTCATTAAATAATTTGTTAAGTAATCTATTAA
TTAAACTACTAAGGTTACTTAGCTACTGAGTGAATTTTAACATGTGGGACAAGCCCCATT
AACAACTCATTATATCTATTGATTTAATTTCGTTGATCAATTAACCAAATGTGAGAATGA
CAGTTGGGTACCACCCCCTAAAATTAATCTGATTAATTATTAATTAAACTAAATTAAAAT
GTGAGTATGATACATGGGGTCCATTGGTCAGTTTGACCAGTCAACTAAGACTATTGACTC
CTCATGTGAGCATGGCATCATGGTGATGTCATAAATGATTAATTTGAATTAAAATAAATT
TATTAAATTCTGAATATTAATAAAACTTTAAAATTAATATATAATAATCTAGAATCCAGA
TGAAAATAATTTATACATGAAAGTTGATAAGAAAAACGAGACGAAGCCGGATACGATATT
TGTTCGTTTGTCACGCGTTTCTATCATAGAGAACATGAAATTTTTCCATGTGTTTTGCTT
GCCGGTAATAGCCACACATCCGAGAAAAATCGTGAGATCTTTTCCTGATCCGTCTATAAC
GACTAATATTGCGTTAGCTTATGCCTAGCCGTGCATATTGACATGTCATGCATCGCGTTG
CATCTGTGCTATTATATTTATCGTTTCTTCCCCCTGTTCTCTGTGGTAGACCCCGAGACT
GACGCTCCTACCGGATACGACTACCCACCTGACGACTAGCCCTTTGCTGCAGAGCAACAA
GGCAAGCAAACCCCCCTTTGATAATTCCCATATCGCCTATTTCTTTCTCTCTAATGCTCG
CATTAGATTTTGCTATTATTGTAGTTAGCTCATATATCTCATGCATAGCATGTTTTTGAT
GAGCTGCTACCTTACTGTACCGTGCTTTAAACTGCTTAGTATAGGTGGGGCAGTGATCCC
CTTTTGACCCGTTAGCCCACTTGCCACCGCTTTATCGTTGAAGTCTCGATCAACCGATCG
ACA