Map Locations of contig_64877 (5563 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_64877

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73988 2 1724 bp AK249230.1 Available Available None
MLOC_73987 1 648 bp AK358422 Available Available None





CDS Structure of MLOC_73988






CDS Structure of MLOC_73987






Contig Sequence (5563 bp)

>contig_64877 5563 assembly3_WGSMorex_rbca.fasta
TATTTCCGGACGGAGGGAGTAGTAACGGAGGGAGTAGCAGGCAACATTATCGTAAAGGAG
AGAAGGGAGGCACCTTGAGGAGCTCGTTGGACTCAAGGTTGTCCGTGAAGGCGGTGACGA
GGTTGGGCGTCACGCCGCCCTTCCCAACCTGCTGCGACTTGAGCTTCTTGCCGAGGCCGT
GCGCGTACGAGGCGAGCTCCTTCCGCTCCTTCACGTCGAGCTTCGGCCGCGGCAGCCGCG
GGAGCACGAAGGAGGGGGGCGCCTCCTCCTCCTGCTGCTCCTCCGTCGCTTCGAACTCTT
CTTCGTCCGCCGCGGCCACCGCCTCGGACACGGCCGCTACGGCGAGGCCGTGGCCGGTGA
GGAGGGAGCAGAGAGGGCGGTGGGGGGCGGAGAGGCGGAGGCGAGCGGACGGGACGGGAG
GGGCAGGGAGGGACCGGAGGTGGGAGGAGAGGCGGGCGAGAGGGAGGCGGAGGAGGGCGA
CCGCCGCCGCCACGCTCGTCATGGTGTTCGACGGAATGCCGAGGAGGCGACGGACTCGGG
AGGGGATAAGCAGGGGGTACTGCAGAGGCAGAGCGAGCGAGGTAGGAGATAAGCAACTCA
TCAGAACTCAAGGCTCGGGCCCCATCTGTCAGCGTCTGATCAAAGTTCTATGCCATTCAA
ACGAGAACACCACGCACATTTCCCGCTGGGTTGCCATACAAACACTACGATATGAGAAAC
ACAAGAAGCTTCTAGCAAATTTAGTACTCCCTCCATCCAAAAATACTTGTGGAGGGAATG
GATAATAATGAATGTATCTAGATGTATTTTATTTCTAAATATATCCATTATTATGACAAG
TAAATCCAAACGGAGGAAGTACGTAACTGTTCAATTCCCGTTGAGAATTGGATTCGAAAA
GGAATCTCCAGATCGAGAAGGGTATGGAATTTCTGATTTGTTTATAAGAAAAGCCTTTGG
TGCTTTCAAACATTGATGGATTCCTCCCCTTGACATATATATATACTTTGGGTTCCCGCA
AAAAAGAATTCTGGAAAAAATGGTCAAGTCAGTGTCATATTTGGGGGGAGGATGCAGATA
ACAACAGTGCACACGGCTAGCCATGAGGCACCAACAAGCCATCCATCAGGCACATGTCTT
CTTGACAAAAAGAACATATATAGAACAAAAGGAATTTCCACGAGCTCTTCACTGATCAAC
GTCTTTGGAGGCGAAAGAACATTATAATGCACATTGTACAACGCCAAGGACATGTATGGC
TCAATGAACTTCTAGAAGACCTGGGCGACTTTGCTCGCCAGTACACGGTCCCGCTTTTCG
ATGAACTCGGAAGGGAACCAACCAGCTTTCCCCCTGCACTCACCTTCAGCCCATCCATTG
TTTGACACCTGATTAAGCAAGTTATAAGCCCAAGGACCGCAACAAGGAGAAGACACTAAC
AAGATTCAGCAAGTGATAAGCATTCGAGCTGCAGACAGCAGAGTTGCTGCTACCAGCAAA
GAGCCTAGTAGCAGAGTGTTGCACATGGGAACATGTTGTACAAGACAAGTACCTTCCGGA
CCACTATGTAGTCACCGGTTGCCAGGTTGAGCTCAGTTTCAGTCTCAGCTCGGTATGACT
GGATCGCCTGACGAAAAGATGGACATGTATAGCGATTAAGAAGAAAGTCCCAACAGACAT
AACAATAATAGGCTAGTTCATTATGATGAAAGTAATAATTGGTTACCTCAGCCAGGAAGT
GCTCCACTGTCTCCACCAATTCGGCAACTGTTGGAGTCCTCATGAATATACCGTTAACTT
CTTCATATGAAGGTGGCGGTGGCATAGAGTTCTCAATGACTGGAGGAGGTGCTCCTTCAA
TTCTTTGGCGCTCAGCTACCATCTGCAAAATAAATAGTTCAGAATCATGATAACAAAACA
AATATCTTTCTCGGCAATGTGCAAGTTTGTTTGCTGTGTAAGTGTGATTAGTACCTCTCT
TTCAAGTTGATCTAGAATCTGTAGGACCCTTTGGTGGTAACTTCTCTCAGATTCAACCTT
CATTCAAGTAAGCAAGTGTCATTCGAAGCAATAGTAGAGATTAAGGCAAAGAAGGAAATG
ATCAAGCGACCCAACTAAACAAAGATTAAATATACCATCGCGATAAGTCGTTGTAATGTC
AGCCTTTGTTGTTGGGCTTCAACAGCAGTCATTGCTGCAACAGCTTCTTTGCCTAGAGTC
CCCATATTTGATTTTAACTCTTGCAGCTTCGACTCAGCAGCCTCTAACCTTGAAATCATA
TCACCATTTCCAGATGTCTCTCTTAATTTCATCTGGCGCTTTGAAACTTCAATAGCCTGC
AGAACGCATGGATATCTCGCTAAGTGCCTTGTAGCAACAAGAAAAAGAATGTGGCATAAC
ATGACAGAGTGATGTTCAAATGAACAGTGGGAAGAAACTGATAGGAAACACAGATGGCCA
AGAAACATTTCGAAAGTCCATTTATGGGGAAGTGATGTACTGATGTATATTTTCATTTAC
AAGGCAACTTCGCATTGCAAACCAAATAAAATAATTATCTGCTAGAACAATCGCAACTCC
CTGCACAATTGCTTAATTAAGTCAAGCATCTCACCTATTTCTTCTGCTCCCTGTGTACCC
AAGAAATGCAATTCAACTGAAAATAAACTGATTTACTTTAAGTTGTCGGACTTTAGCACA
AAATAAATAGAACATGAGATGCTGATCTGTTTAAATGGCGGAATGACTTCTATTATGGCT
TTGCATGAAACATACAAACAGTGACTTGCATGAGGTGGTGCTCCACATTATTTTCCTCGT
AAAACATTTGTGGACTTAGTGAAATAGATATGCCATTTTTTCAGCAAAGAAGATTTTCAA
ATCATCTGACATTATGTTTCACAAGGTACATCTTCTAAGTAATACCATAATTTCTCCAAG
CCATGTTATTGTATATATTTCAAACTGTCCACAGTAACTTAGAAATGAATGTTTCTAAAG
CCATTGGAAGCAAGAGATGACTACAATCATATGATATTCCATAGTGAAGTAACCTGTGCT
TCAGCTTCTTGACGCATTCTGTCATATCTTTGGGCAAGGTGACGAGCATCTTCCAAAGGA
GCTCCCATCACCATAGCCCTCAGTGGCTCTGCAACCTGAAAATATTGGCCAAGTCACAAA
TATGCAAGTTGAGTAATACGTACAAATGAACAGGGTTGCAAGGATGTTATAAGTAATAAC
ATTCGTAGCAGAATAAGGTAGTTATTACTTATTAGCCCGCACATGGTAATGGATAATTAA
GTCTTAATAACAGTTTTGATAGATGTGAGGATTTGCACGAACAAAAGAAAAGCATCAAGA
CATAATATCACCAACAGAGAACACGGGTCAAAAAGAAAAGTCCAGTTCCTCTCTATTTTC
TCACTATTCTATCTTCTATTTAGCATTTTCCTATTTTAGAAGGAAAAATAAGATGTTCGG
AGGAAGGTTCTGAAACTAACAGCTCCGCTCGAGGTCTACATTCGGTGGAAACCTCAGTTT
CACAAATAACAGAAAAGGTGGATGGAGATCATTTAGGACAGACCCAGTGCTCGAAGCTCC
CACGCCAGGTGTGGTCTGGGGGGAGAATTACATGAGGCAAGCCTTACCCCTGCACAGTGT
AATGCAGAGAGGCGGCGTCGAACCCAGGACCTCTTGGCACAAGTGGAGAGTACTTCACCA
CTGCACCAGGCCACTGACAAATTATACTAGCATATATTTCTTAATTACTACCCTACCAGT
GCAATAAGTAACGGGAAAAAAGTAAGATGACAGTGTTTTTGTTCCCACGTGACTTAAATA
CAAACACTGAAATGGTGACGAGTCATGACAAAAATCAGATCATCAGCCCGTTGGCAATTA
CCACTAGTCATGTCTACTGAAATAAAAACAGAACCAACATGTAACGCATCATAACAAACT
TTACATTCTACATACATAATCCCCTGTGTTTTTATAGGTTACGGAGCTGAAACCAAAAAG
GGACAATACCTGGGTGCCAAACGCTTTCAGCAGGTTTCCCCGCTCCTTCTCCATCAACGA
TCGTGCCTTCGCGAAACTCAACGCCGCCCTCGAGAGTGTACTCCCACTGGTACAGGTATT
CTCAACACCATACTTCTTGCCATCTTCACATAACTTATTGCCTGTGAAACCGTAACACGG
ATTACGTGCCAAATTCACAATTGGTTATGCGTTGCAGCAACCAGCAGGAACATTACCTAA
TTCGACTTGCTTCGAGCCTGTGACGATGTAGCCCTCGACCCCACGAACTATATCCCTTTG
GAAGTGCTGCAATGTAAGTGGAAGAAATGACCAATCTGTAAGCAAAAAAAGATAGGAGGG
GCGAAGCATTACGAACTGGGAGGAAACCGTATGTTGTTGGTCCTGTACCTTGGCGGCGCG
CGTGGAGATGTAGAGCTTCTCGAGCTTCGAGTGCTGCTGCGCCTCGCCCTCGTCCGCGAA
CACGCTGTCCGCGTACCCGCCCCCGAACTGCTTCAGCACGGCCTGCGACAGACACGGGGG
CGCCGTTCAGGACCTAGCGGCAGAACACGAGATCTGGAGGGGGTCCTCGTGCCACATCCG
AAGGGATGAACGGACACGAATCCTTAGCGGGCGGTTCCGCGGTGCTCACCTGCTGCTGCC
GGGCGACCTGCTCTCGGAGCTTGGATGCCTGCTTCCGGATGGCCTCCATTGGCCTCCGCC
GCCGCCGCTGATGGCCCCCTGTACGACGAGGAGGTCGTCACCGAGGTCGGAGAGGCGTTT
GGTGTGGAGAAATGGAGACGGAGAGGGGTCCGGTCGGTGGAATGGGAGGGGAGATCTGAA
TCGGAGGATGGTGGTGGTGGCTTGAGGCTTCCGCTGCTCCGGTCCGGCCTGCTCCGTTAC
CCTTTCTCTTTCCCCCTTTCTTTTGTTCTCGTCGTTGTGATTATTGAACGGTGAGATGAC
CGAACGGGGCACGAGTAGCTTGGTTTCTCAACGAGTACTAGCTTGGTTTCTCAACTGTAC
CTCGTGGAGTGAGAGGCTGTATTTATGTTTTTCTATTATAATAATATTATTGATTATTGA
ACGAGGGATTCCGGCAAGGTTTATAACAGGTTTAAAAAAGTTGCAATATTCATCAAACAC
GTGGTATATTAGACATGCGACCACACGTCACATGTGGCATATTCAGAAGGCAGCTCATGC
GATCATGTATGGACGAACAGAAGAACTGTTCACATGTCATGGCGCAGCTATTTCATGCCG
CACACTTAACAACTACTAGTCATCCCTACCTCATGCGTGCGGCACAAAGTAAATCTACGC
ACACATCTTGACGCAGCTACTTTAGTTATGTAGGGAGTGGCAACTTTAATTGTCCGGAGA
TGACAACTTTGGTTGTAAAGCATGGCCATTTTTTTATTTTGATTAACTGTAGTTGTCATG
TCAAATTAAAGATAATTGTCACATCTGATAAAACCATAATTGCGATATGTAACTAACTAC
TTCTCATGTATGGTTAAACAATACTCCCTCCGTTCCTAAATAT