Map Locations of contig_64796 (9592 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_64796

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73949 1 1243 bp None Available Available None
MLOC_73950 3 3071 bp MLOC_73950.1 Available Available LOC_Os01g42234.2, FRAME:-2, EVALUE:0.0, 13101.m04337 protein amino acid permease family protein, putative, expressed





CDS Structure of MLOC_73949






CDS Structure of MLOC_73950






Contig Sequence (9592 bp)

>contig_64796 9592 assembly3_WGSMorex_rbca.fasta
GGCGACATCCACGTCCTTTCAGCCGATGACTCCCCACCCACACGGCCAAGTCCAGCGCCC
GGAACCATCGGCACCACCTCTCCCTGTTGCCAAGAAGGGGTACCCTTGTCGAAGGAGGCC
GCCGCCACCGCACCTGCGCCACCAAAACTGAGGGGGGCGTTGCCATACCACCTGTCGTGC
CAACCACCGGCCACAGTAGGGAAGGTCGCTCCTGGCCCAGGACGCACACAACCCCCACCA
TACGTCGGGTCGCCAACGTCAGATCTGGCCGGATCCAATGGGTGTAGCACCACCATAGAC
CCGCAACCTCTACACTGCAAGAGCATGTCCGGGGCGCCACGCACGCCATCGCTCAGAGCA
TCTGCCGCCGCACCACTGTACCCCGTGCCCCCGGGCTATCCCGCGCCAGTCGGGGGAGGG
CAAGAGGAACGAGGCCCCGCTGCCGCCGAGGCCAGCTGGGCTTTGCCTGCTGGCCCTTGC
CGGCGGCGGCGAGGGGAGGAGGAGGGAGGAAGGGGGTGGAGGGATGACGGCTAGGATTCC
CCCCCCATAGCTCACGGGAGGCACGCGAGGGGGGTGTGGTCCAACTTCATTTGGTGAACA
AATCCCGGTAGCGGCTCGCCTCCCGCGTGTCGCGAAGCGATGCAGGGCACAACATGACTA
AAGGTAGCATCGATAAAGATGGAGGGTGTGGAAGGGGTGAATGGAGTTGGTCGGCACCGC
CATGATTGCGATAGGTGGGGTGGGTGACATCACCGCTCTCGAAGGGAGAGTAAGAGCTCC
ACGCATCCTTTCCCCTTGGTTTTCTTTCATTGTCTCACTTCTACATGTACATTATATCGT
CTTGTTCTTACTTTAGCTTGCTTGACGGCAAACAGATTCTTTTACGCCGACCTCAAAGAA
TTCCAATGACACCTCGGTACTTGTACTAAGAAGAAAGAATAGTACTCCCACACATTGCAG
GATTCCTTGACCAATTAACTTTGTTTTTTCAAACAAAAAACATTCGCTTTTCTTACTTCG
CTCGAAGAAAGAAAAGGCGGCCTCGCCACGAGGAGTCTCCCCCGTTGCCGCTCTCCAGCG
GCTCCCCTCCATCGGCGCCCTCGATCGTCGGTGGTGAGGGGGGTCGCTAGATCCACGCAT
ATGGATCTTTTTTCTCTCTTAGTTTAGTTTTTTAGGTTGTCCAACGTCTTAGCTTCGGCA
GCAACGATGTCGACGTTGAATAAAGTTTCTTGAGATCCTATTCCAACGAGGCGGACAGTC
CTATGATTGGGGATGGATTCGAAAATCAGTCTGTTCAAGCAAGGATGGCATGGCGGCGAC
GACATCCTTGTGGTGGACCTGCGTCCTCGGGATCCTCCATTACGGCGACCTTTCCTCCAA
CGCTGGCGTAGAGCTTAGGAGGTAGTCCAGGAGCAGATGCAGATTGTGGTGTGCATTGGA
GACACGTGGAAGATGGTGCATCATGTGTTGGGTTCGTGGTTCATGGATGGTATGTGTGGT
GTTCTTGTCCATCATCTTAGTCATGTCAGGGTACCAGATCTGGAGTTAGCTGGCGTGTCC
GGGGTGTTGCTCTAGTCTAATTTGTTCTACGGTAATGGTTTCGCTTTTGGTGAGCCACTT
TGAAGGTGCAAAGCTGCATATCAGCAATGGAGCCGCTTCGAGCTCGGGCGTGGAGGTGAT
TCATCATTTTTCCTTTGGTGACTGTTGTGATGGTTCCAGATGCAGGTGGTGGGCGTTAGT
GTCAAGTTCAAAGGTTTCTTCGATCTTGATTGTAATTTTACTTCTTGGTTGTTGTTCTTT
TGTGCAAGAGCTAGCGCTATGTTGTCTTTTTAGTTTTGCCACGTTGGTTTGTATGTGGCT
TATACTATGATCCCTATGATAAGACATGCATTCTCATGTAAAAAAAGATTATGTGGCCAA
TTAAATGGTTATTTGCTTAATTCATAGTAAGATAGAAAAATCCTCTAGACAAATCATAAA
GTGTACAGTCCCTTTTGAGACACTATACCAACCGACAATCAATATTATTTTTTAGTACAA
TACAATCGTAAATAATTGACAATTGACTTTGGGTATATAAGGGCATCTCCAGTCGCGCCG
CTAACAGGCCCCCACGCCCCTTTTTAGAAGCCGGCGGTAAAAAATCCCCCACTCGCACCC
CGAGGGCGTCGTTTTTTGTCGGTTAGGCCTATTTTTTGGGTCGGCGATCCTAGGCCGAAT
CCAGCGCGCTCGGGGGCTGTTGGGTGGTCCGAGGGAAGGAAAAGTGGCATGTGGGACACC
ACCGTTACGCGAGAAACGTCTTTCCCCTGCCAGATTCTCCCTCACACGCCACAGGAAGCC
TCGCCGCCAAGCCGATCCCGGTGCCGCCCACCTGCCCCAGCTCTGCCAGTAGAAAAAGGC
CATTTCCCAGTCGGTTTTGCTACAGCCTCCATCCCGCTCTCCTGGGCAATCTTTTCAAAC
CGCTCACCGTCGGCTGCTCTCCCACCACGCCCGCCAGGTGTTGGCGATTTGCCTGCTCGG
CCATGGACTCAGACGACGAGGACGCGTTTGCGACTTTGATGGAGGAGGAAGCCAAGGACG
AAACCGCCGACGAAGAACACCTCATGACCCTCGCCTTGCTGGTCACCGTGTTCACGAACG
ATGCCAAGCCGTCGCGAGGTGGCTCGGCGCCGGACCGCCACAAGAGCAAGCAAAGACATC
GCATGGACGGCTATTGCACGCTCTACGCTGACTACTTCGCCGACGCTCCTCTGCATGAAG
AGAAAGTATTTCGGCACCATTATCGGATGGGCCGGAAGCTCTTCCTCGGGGTTTGAATGC
CATCCAGGAGTTCGATAGCTATTTCATTTGCAAGAAGGATTGCACGGTACGGTTGGATTC
TCCTCACTCCAGAAGTGAACCACAACTATGAGGATGCTTGCGTACGGAGCTCCCGGTGAT
ATACAGGAAGACTATGGATGCATGGCTGAGTCCATCATCATTGAGTGTTTGTACAAGTTC
TGTAGGGCAGTGCTGGCAGTGTTTGGACCACAATATTTTAGATCACCCAATGCTAAATAC
ACTGCTCGGATCCTAGCAGAGAATGCAGAAAGAGGATTTCCTGGGATGCTTGCAAGCATC
GACTGCATGCATTGGGCATGGAGAAATTATCCATTTGCTTGGCAGGGGATGTACAAAGGC
GCCAAATGAGGTTGCAGTGTGGTACTTGAGGCAGTGGCCACGCAAGACCTATGGATTTGG
CACTCCTCCTTCGGTATGCCATGAACTCATAATGACATCAACGTACTGCAGTGCTCGAAT
GTCTTTACAAAGCTTGTTGAAGGTCATGCTCCTCCGGTGAACTTCGAGGTCAATGGACGC
CACTACAACAAGGGATGCTATCTAACAGATTGTATCTATCCGAGATGGTCGACATTTGTG
AAGACTATCTCAAACCCTGTGCCAGGAGGCAAGAAGTCACACTTTGCTAAGTGACAGGAG
ACTTGCAGGAAGGATGTCGAGCGAGCATTTGTTGTGCTCCAATCTCGATTTGTTGTTGTC
CGCTACCCCGCTCTAACCTGGTCGAAATCTCAGATGTGGGAGGTGATGAATTGTTGTGTC
ATCTTGCACAACATGATCATTGAGAGCGAGTAGGAAGAGCCAATGTTTAACACTAAACCA
TATTTCAGGCAGGATCCTCTTGCATTTGTTGATCATCACGTACCGGCAACATGGGATGCC
TTCCTCAATATACGTTAGGAAATCCGAGACCCACAGATGCATCAACAACTGCAGGACAAT
CTAGTAGAGCACCTATGAAGGCTCAAGGACAACGCCTAGTTCGATTTGTTTTATTTTATG
TTTAAATTATGATAAGGTTGCTTTGTTGAACTATTTGATTTTTATTGACTTCTGTGACGA
GCTTTGTCATAAAAGTTTACTTTTTATTGAATTTGTGTTAAAAATGAACCGAATTTAGAT
CAAATTTGGACCGAATTTGCGTCAAAATTGGGCCAAAAGCGACAGCTGGGAGGCGACCTT
GGGGATCGGCTGGGAACCCGAACCCCCCGACGCCGAATTTAGCATCGGTTCGCCCCCAAA
CTATGCTATTTCAGGTCCCTGCCCTAATCCACGGCTAGTCAAATTCCTGGTAAATATTAA
GAAACGATGTAAACACGGTAAGTTCAGAGAACTTTGTTAGCGAAACATTTTGCCGGTTAA
CTGGCAGTATGAATTAGTCCATTTTCCTATCTTGTTGAAGAAAATAGTAATTACAACGTC
TCATCGCCTCCAACACATGTCTTCTTTTCTCCTCTATATATCTACCAGGCATCAGCCTCT
ATTAAGAAACTCAGATACAATCATACAACCAGCCTACAGCTGCAGCGTACAACTAATTCC
CCCACCCAAATTCACATCACGTGGCGTTCCATGGTGAAATCACGTCACAAGTTAACGATT
CCACACGCACACACGCGCGAAGCTAGCCGCTCAAATTCGTGACTGGTCCCTTGAACCAGT
GCCTGGCACTGACGACCCACGACGTCAACACGAGAATGAAGAGCCCACCGACGGCGACGG
GAGTGTAGTTGAGCGTGTCCTTGGTCACTGGGTACGTCACCGGCAGCGAGAAGAGCACGG
TGATGGTCACCACCCAGAGCACGGCCACCCATCCCACCAGTACACCGTACCGTCCGAGGT
TGAACGGCCCCGGCACGAAGTGCTTGCGCGCCAGCGTCACCCGGAAGAAGATGGGCAGCG
CGTACGCGATATAGAGCCCGATCGTCGCGATCGACACCATGGCCTGGAATGCCACCAGGC
TACCCAGCGACTGCAATTTTCAATCAGAGGCCATGATTAATTGGAGGTGCCGGAAATGAA
ATAGTGCTATGTAGTTGCAGTGAAATGTAGTGGTGCCTAATCAATCGTTTACCGGCAACG
CCATGCAGAGGGAGACGAAAGCCGAGAGCCAGACGGCGTTGATGGGCACCTCGTGCTTGT
TTACTTTGTGCCACACGGATGACAGCGGCATCGCTCCGTCTCTCGAGAAAGCATATGCCA
TCCTAGTCAATAGAAGGAGCGATTTCAGAACTTGTTCCGAGAAAGAAATGCGGCGGGAAG
GGAAGCGAGCCAGCTGAGGATGATCACCTCGAGTTACTGGTGACCGAGCTCATGCCGCAG
AAGTATATGGCGACGGCGACGATCCCCAGGCAGACGATGCCGCCGACGCCGCTGCCGTAG
CGGCTTTTGAAGGCGAGGTAGAAGACTTGGGCGATGGCGTAGCCTCCAGCTTCGTTGTCA
GGGCTGAGCAGGTAGGGTATGTCCTTGACGGCAAATGTGATGCCGAGTATGTATCCCCAG
CCGACCACTATGGATATGCCAATGGCGCTGATGATCCCGATGGGGCCGTTCCTGTCTGCG
TTCCTGGTCTCCTCCGTCTGCGTGCATGATCAATTACAAAATGCGTGTCATAATTAACAA
GATGAGATGAGATGAGATTCCTTCTTCTTTGGCTTGATTAATTACCATATGCGCTGATGC
GTCGTATCCTGTGAGCGTGTACTGGCTCATGAGGATCCCCAGGACAAAGATGTAAAGGTT
GCTGTGTATTCCAGCGCTGTTGTCAGTGTTGAAATGGGTGAAGACAAACTTGGCACTGGC
TCTCTCGGTAGCAACAGCCGGCACGGCAATCATCAGCACAAAGACACCTACAGAGACAGA
CAAGCGTGGAGGTGGAACCATCCATCCGTTAATAAAGTGGATGCCAATATTCATTCTCTA
CGTAGCTATCTGTGGTGAGAATCAGTGCTCGCCAACCCCAAGTAGTAGAGTAATCGTGTA
GGGCAAGTGCGAATGACGAGAGAAAGGAGAGAACCTAGCATGTTCCAAGCAGCCGCAAAC
TGGCCGAAGAAGGAGAGCCATGAGATGGGTAGGCTGTTGATGACGGCGTGGCTGAGCAGG
ATGGCGGCGTGAAAGGCGATGACCACGTACTTGGACGCCAGGTACCCTCCGCCCTTGTTG
CCGCCGGTGCTGAGAAGGATGATCACCTGGATCAGCTGCGCCAGCGAGAAGTCCACGCTG
GTTGTGACCGCCCACTGCAGGTGCAGATCATGCAAACTGAATCAGCACATCACATCAGTC
AGCAGTCACAAAGTGACAACAGACATTCAGAGTTAAGCCACTGGTTGGTTACCTGGCCAA
CGATGTTAAACCTGCATGAAGCACAACAAACGTCATTAGTAGAGGCCGGGAATAATTGAA
ATGCAGATGCATGAGCAATTAATAGCGTATCTAGGGCCATGCGTATATGTGCGTTTATTG
CAAGTACGCCTTGTCTTAACTACAAGGACCATGCTGATAGCATATTTTCAACCACAGGTC
GCTGTCAAAATCAGACTTTATATGCAGTGCAGTTGGCACTGCTTCTGCTACCAAAATGTG
GCCACGGGAGCTGCACATGGTCAAAGCACGCAAGCACATGAACAGAAGACGATTATTCTG
TTCTGCATTACGAGGAGCACGTCGCTAAACAACGACAAGTGCAGAGTAAGTACATTTGAT
TGAAAAAGAAACGATTGTTCTACTTTGCATCCCGAAGATAACGGTGTTCCTTTTTCTTTT
TTCAGGGGAATGATAATGGTGTTCTTGAATAAACAAATAAACTATTGATTTTCCTCAACA
AAAAATCATTTACCACATGGCCTATGTGGTCTCAAAACCCAATAATAAACTATTCATTCC
ACATACAAAAGGAAACGAGGAGAAAAAAATGACAGAAAGAGATGCAGAAATTTCGCACGC
ACCAATTTGATGTCACACCAGACAAAAGAAAAAACAAACAGAAAGCGGTTCGTTCACACT
CGATCCTCTTCCGTTCTCCCCCTTCACATGATCCCAGCCAGAGAAGAAATGGATATACGA
GTGGACAGGGAATGAAAGAAGAAGAAAGATTTCAGTTGAGTGCGTGTACCATCCGGTGAT
CCATGAGGCGAAGGGCGACCATCGGTTGCCCGATAGGCGCGCGCTCCAGTAGTAAAGGCC
GCCGGAGGTGGGGAAAGAGGAGCAGATCTCGGCCATGGAGAGGCCGACCATCATGGTGAA
GGCGCCGGCGACGAACCAGCCGAAGGTCATGGTGGCCGGGCCGCCGAAGTTGAGGCCGGT
GTTGTACAGCGTGGTGACCCCCGTCAGCACCGAGATGATGGTGAAGGAGAAGGCGAAGTT
GGACAGCAATCTACACCCGTACCGTACGCACGCACGCCGGAGAAACCGAGGGATCGATCA
TCAGTGCTCAATCAATCAGTTAACAATAACATACGAGAAGAGAAGCGACGAAACCAAGGG
AGAGGCATACGAGAGGTCCCGCCGCTTGAGCTCCTGCTTGTAGCCGAGCTCGCGGAGGCG
GGCCTGGCCGGTGTCGCCGGAGCCGTCGACGGCAGTGGTGCAGCTGCCCGCCGGGGACTT
GCTCCAGGTCATGGCGCCGTTGCGTTGTGGGACTAGCCGACTAGGAGGAGGAGATGGGGT
CAGGGGAGACCTCCCCCCAGTGGGCAGTGGTGATATATGGACTCCAGTGCTAGAGTCCAG
CACACAAAAATGGTGAATGGTGCTACCTGCACCTGCAGAGGAGAGAATCGCGGTGTGCAG
TCAACTGGAAAGAGTGCGGTGGGCACCAGATGTGGGGTTCGTTACTCTACTCTGGACGGA
GAATCTGCCAACTAGGATGGTCTTGGATCTGTTCTGTTCTGGGTTTGAACCAGGATTCTT
TCCCAAAAAAGACTGGGGATCCTATATTTGGGACCCCTCTGCTAGTCTGAAATACAAATA
CGAGTGGGTTCATGTTCTGCCCATTTCCCATAATCTCTACGTGAAGACTGCAATATCAGC
CCTTTTTGTCATGTGGGCGACGCACGTGCAGCATGGGCTCTTGGTGCCAAATTTGATGTA
CTGTATAATACTCCTATTCAGTCAAGATTACTGCGCACCTATTCAAACGATCGGGATTTG
CTGTCATGTGATCGGGATTTGCAGGCAAAATCGATAAATTTGATTCTTCGGTCCAAAAAA
TTCATAAATTGGACTGTGTTTAAAAAGATTTGATCCCGTTGACCGTTTTATGTGGGGTTC
GACGTTTAGGCGTCACCCTACACTATGTGACGTCTTAGCCGTAGGCGTCACATCTCCGGT
CATGTTGGCGCCCGACCCCACCCATCCCCAGCAGTGTGACGCCTAAGCCTCAGACATTAT
ATTTACGGTAGTGTGGCACCGAGCGCTTAGGCGCCACACCCCCACTTATCCAACCGCGGG
CCGGCCCCTTCCTCATTCACCTCCATCATCACAGAGAGTTCCACTCGAGTTCCCCTCTCC
CCCTTCCTCAAATCCCTCTTCAAATCAAGCAGATCTGAAGGTTTGGTCCGGGCATTTTGT
CTTCAATCCCTACCATAAGGTAATCTTCCCCGATCCCCATCCTCTCATCCAAAAAAAATC
TCATTTTCTCACTTTTTTGTAAATGTGAGGAAACCTAGTTCTTCATGAAATTTTGGATGT
GTATGATATTGTTGCACTTGTTTGTATGTTAGGATAAGGAGTATGATGGGTTGCTTGGAT
TTGTTTATTTTATATTTGCTAGATGAGTATTTAAATTGTTAGTGACTTGACGATTATTAA
AACTAGATAATGCTCTGCACGTTGTTGTGGGAAGCTTGTTAATAAAAATATGGATAATTG
ATAAAAGACTAATAATTTATGCGAAGACAAATATATAAGTGTGTTTTACATGACTTAATT
CCCTTGAAAAAAGTCATGCATGAGGTGGTAGATTTTGCATGCAAAGATTAATGATAAAGT
AATTTATGACTCCATGCTGAACATGGTGATGTGGCATTGTTGCATGGAGAGAAAAATTAG
GTAGTGAGTTGTAGCTATTTAAGAATAGAGGGTGAGTATTCTTGTATGATTGTTTAGATG
AATTTTTTTTGTAATACTTAGGATGGTGTGGCTTTTGAATGATGCTTATGACGTTGAATA
CGGGACCTACTTGATGTCGGAGAAGGGGATGGTAACTACAACATACTATTATCTTCAAAT
ATATTGTATTTATTTAAAAAGATCAAACCGTAATCATATCACTTCTATGTTTACAGAAGC
TTATGCCCTTGAAGATTCGGTCTTACTAGCCATCGATTGTCATGTCGTACGATGAGCCGT
ACACACTGTACATCGAGATGACAAGACTCCTTCCATTCATTCAGCTTGTGAGCCGGTTAA
CGCCCAACCTGAATGTTGCGGCAATCACTGCACTTAGTGATCGGTGGATGTCGGGAAAAC
GACACCTATGGGAAACTCTAAGGATCCCTTGATCGTTTGGCAGAGGAAGAGAGGTGGCGC
CAAGATAGGAACTAGCGATCAGCACCGGCAAGGTCGTTTACCCAGGTTCGTGCCGCTTGA
CGCGTAAAACTCTACTCCCGCTTTTTTTGTATTGGGTGCTCACTGTAGGGTTATTTGCTA
CAGTAATTTAGGTGGTGATCAAAGAGTCTAACCCCCAAAAGGTCCAACCCCTAGAAATGA
GCCTTGGGCCTCCTNNNATAGGCAAAGGAGTCACCAACAGTGCGCTCACGGG