morexGenes - Barley RNA-seq Database

Contig contig_647600

Source Contig contig_647600

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_647600 (1032 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_647600

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73934	1	507 bp	MLOC_73934.1	Available	Available	LOC_Os03g44150.1, FRAME:+1, EVALUE:1e-62, 13103.m04748 protein aminotransferase, putative, expressed

CDS Structure of MLOC_73934

Contig Sequence (1032 bp)

>contig_647600 1032 assembly3_WGSMorex_rbca.fasta
TTGCTTCTAGATCAGCACCCTCTCCCGTTGATTGCTTTCATACCTCGGATTTGATTATTG
CTGCATTTAGTTGTGATGCTGACATTTCTTAGTGCTTTCTTTGCTCTATTGATAGAAAAT
ATAGATGAGATTCTGATCTTTCTGAATTACCTTCAAAATCATGCTTTCTATTTTCATGAT
GCGATGACCCAAATTTCTAGTCTGAAATTCTTGCTGAGCTCAGCATTTCACTGCATGCAG
CTACCATCCGATTCCCATGGTGTTTTCCAAAGGGGAAGGTTCACATATATTGGACCCTGA
AGGCAACAAATATATTGATTTTCTCTCTGCTTATTCTGCAGTCAATCAGGTTATCTTCTC
TGCAATTAGACATTTTATCCGAGTGCTATTTGACCTTCACAGATCGGAATTAACTGGTGT
GCGTTCTTCGAGACAACTTATTTATGGCCATAAATGATCTTCGTGTTTGTCAATTCCCTT
GTAGGGCCATTGCCATCGAAAAGTCCTAAGAGCTTTGATAGAACAAGCAGAAAGGCTTAC
ACTTAGTTCCAGAGCTTTCTACAATGACAAGTTCCCAGTCTTTGCGGAATATTTGACGAC
CATGTTTGGGTATGATATGATGTTGCCAATGAACACTGGAGCCGAAGGAGTGGAAACAGC
TATTAAATTGGCAAGAAAATGGGGCTATGAAAAGAAGAATATACCAAAGAATGAGGTATA
ACTTCACGATATGATACATGTTTCATTTTAATCCTATTAGTTTTTTTTTTCCAGTATTGG
GGTCTGCTGGTGCGTCAATGGATTTCTGACCTGCTAACATGCCTAGCTTTCAATTTAGCT
CTGACTTACATCTGTCTAGCATATTCTGTTCCCTGGATGGCCTGTTAACTGTTAAGGCTT
CTTCGCAGATAAATAAATAAAATACTTGGTGTAATAAAAAAGTAGACTTGCACTTTCCAG
GACAGCTTCCTTTGTTGGGGTCTGCCTGTGGTCATTTTCGGTTGGTGTGGTAAAACTGCT
ATGTAGTTGGTT