Contig Data
morexGenes
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Map Locations of contig_6475 (5895 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_6475

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73927 2 1725 bp MLOC_73927.1 Available Available LOC_Os03g27610.1, FRAME:+2, EVALUE:0.0, 13103.m03233 protein patatin, putative, expressed
MLOC_73926 2 3533 bp AK357608 Available Available None





CDS Structure of MLOC_73927






CDS Structure of MLOC_73926






Contig Sequence (5895 bp)

>contig_6475 5895 assembly3_WGSMorex_rbca.fasta
GTGGGTGCGGGGGATAGAAGCTGCAGTTATCTTGATGTTTTGTTGAGATACTTACTTACG
GGTTTGCAAATATTTTGTCAAGATGTTACTGTTTCAGTCAATCACCACCAACAGTAAACG
TGACTTTTTTCTCCAGGAATCTACAAAAGCAATGGTTATCTGAAGATATCCTGCAATGGA
GGTCTAAATCAGATGCGTTCAGAGGTCACTTGTTTTTTCTTACTTCCGCAGTTTAATCCT
AGTTTTCCCATTCTAACTCTTGTTGTTCTTTTCAATCTCTGTTCTTCAAGATATGTGACA
TGGTGGCAGTGGCACGTCTGCTAAACCTCACGATGGTTGTGCCAGAACTTGACAAGAGAT
CATTCTGGGCAGATCAGAGGTTCATTCCATTTTCTTGAAGAGGTTCTCTATGTATTAGCC
AGGTTGATGATATCTTAAGCGGCTAGTATTCTGTATGCTTTTCAGCAATTTTGGAGACAT
ATTTGATGTGAGGCATTTCATTACCACATTAAGAGATGAAGTGCGCATTGTCAAACGGCT
ACCAAAGAGGTTTGGTCCAACAGATTCAAGCATCACACTTGACATGTCACCTGTGAGTTG
GTCAGATGAGAAGTATTACCTGCACCAGGTCTGTCAACTTATCTGGGATCCACCCTTGCT
TTATGGTACATGCATTACTATGTACTCTTCATAGTCTCTCACCTGCGCAGATTTTGCCAC
TCTTCAGCAAATATAAAGTCATCCACTTTAACAAGACAGATGCTCGGTTAGCAAACAATG
GCATCAGTACTGAACTTCAACTGGTTAGATGCCGTGTTAATTTCCGTGCACTGAAGTTTA
CCCCTCAAATTGAGGCATTGGGTAATAAACTGGTATGGAAACTTCGAGACAAGGGATCAT
TTGTGGCATTGCATTTACGATATGAGATGGACATGCTGGCGTTTTCTGGTTGCAATCATG
GTCTTAATCCTGAAGAGGCTGAGGAGCTCAAAAGAATGAGGTACCATTTTCGTTGTACAG
TCTTTCACTTTCATCTAGTATGAATACACACGTAGTAGCCTTTTGGATTTTGACTCAAGT
AGTTTCTTACAGAAGGAAAACGTTTACTTTATTGGTTCTTCACTGACATTGATGGAAAAC
GTCTACAGATACTAGCAATGGTGACATAGATGTTGTATATATTAGTTTTTTTTTGATCAA
AAGGGGTTTCCCCCCTGCCCCATTTTATAACATGAAGCAAAAAGATCACCAGTACATAGC
AGCTGACCTAACACTAGAATCAGCCTAGGAAAGAAAGTCTGGCCTCAACGGCTCCAAAGT
CTACTACACCAAAACAGCAGTTCACCCAAAACAGGGTTTATCTTTTATTACAGCATCACG
GACTACAGCTAAGGAAGACCTCGTTGACAGATCAAGTTCATCTTCTTTTTCCTCAGCGAC
GGTGTCCTGATGCCTGCATACAGTTCTCTTGTAGTATATATTAGTTTGTCTCTTGCGTCC
CTGCATACAGTTCTCGTTTTACATAGCTAATGTTCAGAGCTGGATGCAGTGTAGCATCGG
TATCAGTCTCAATAAGTTGCGCGTTTTCATACATAGTTTCCTTTTTCATGATGGATTCAT
GTGAATTGAATAAAAATTCAACTGTTCATCTGTTGTTAGCACAGTCAAATTGGTTGAGTG
CCATCTTGTTTTTATTTTTATTTTTATTTGAGAAGGCGTGCCATCTTATCTTGGCCTTGC
TGTTTTTCTTGAGCTGAAACGTGGTAGAAATTTTTTGAATCACCAGAATCTAACTTTTTC
CCATCCATCAGGTATGCTTATCCATGGTGGAGAGAAAAAGAAATTGATTCCAAAGCCAAG
AGATCAGAAGGACTATGCCCACTTACGCCTGAGGAGGCATCACTGGTTTTGAAAGCCTTG
GGCTTCGAAAAGGATACTCTCGTATACATTGCTGCTGGTGAAATATACGGGGGAGAAAAG
AGATTGGAACCATTACGAGCTGCTTTTCCAAAACTCGTAAGTGTGCCTAATACTTTTGTC
AATTACATTGGCTTGTTCATGTTTAACTATAGTGCAATTTCCGAACATTCAATTGCAAGT
GAGAGTTTGCTCGTTTCTGCCAATACTGCTTGCAGTTTTCCAACCTCCCATTTTATATCC
AGGGTGTCATACTCCCTATATGTACCAAACCCGCTAATATAAGCAATACTGATTATCTTT
CAGGTAAGAAAAGAGATGCTGCTAGATTCAGAACCTCTGCGCCAGTTTCAAAACCATTCT
TCTCAGATGGCTGCACTTGATTTCATTGTATCCACCGCTAGTGATGTTTTCCTTCCTACT
TACGATGGTAACATGGCAAAACTTGTTGAAGGCCACAGAAGGTATATATACGGCAATATT
TCGTCTTATAAAATCAATCAAATATCTTTTCAGGATACAGCGTGTACATATAGCACTCTT
GTACAACAAGTTTAGTAGTCTACTCCTTAAAAAATAAAAATAAATAGATAGTATCCTCTG
GTTATAATTATCTGGTTGAATTTTTGTCTTCAGGTTCCTGGGTTTCCGAAAAAGTGTGTT
GCCAGACCGACGGAAACTAGTTGAACTTATAGACTTGTACACCAACAAGACAATTTCTTG
GGAGAATTTTACATCTTCTGTCCAAGAAGTTCATAGAGGCCGTGTGGTTCAACCATCCTG
TCGGCGAAAACTCGAAAACAAGCCGAAAGAGGAGGATTACTTCTATTCTAACCCCCATGA
GTGCTTGGCCAATTCAAGCCTGTGCAGTGGAACCAAGAATACAGTCACTGTAAGGTGAGC
ACATTTGCCGCCTCGCCTGTGCAAGTTACTGTTGGTGATGATCCTCGGACTGAAGCCGGC
ATTCGGGCAGAGTCCCCACGATCGTCTAACCAGTGTTCCCAGTGTTCTGTTGTATAGGTC
AGGTTTTTCTTCTTTCAATTCTGCAATCCATTCATTTATGTTCAAGCTTGCCGAAATAGG
TAGCGAGGCTTTGTGTAAATTTTTGTTCGGCTCTTGTTCACTGTTGATTTATTCATGATG
ATGATGTCGAAAGGGATATACAATTGCGACGGTGACCAATTGAGAGAGATTTTGGCTTCA
TCAAGTGTATTATTTCTCCTGAACTGCTCATTTCCTTTCATTATCCATGTGAAGCTTTCT
CTACCTAATCCCAGCCAAAAAGTATATAAAGAAAATAGATGAAACTAACCCACACTAAGT
TACAAGATCAGCGTCTGGATTTCAGACGGCCGGCGCCAACGCGCCGGCGGCCGAGCCTTG
TCCTCCTCTCGTCGGAGAGCTGTTTGGCGAAGCCGGCGAGCGCGTCGGCGTTGCTCCCGG
CGCCCCGTATCTCCTCGTACCTCCCGGTCTCGACGTTCACCCTGGACACCCTCTGTGCCA
ACATCCGCTCGCCGATCCTGAGGAGCTCCGCCATGTTCTCGGGCGTGGCGGCGTCCACCG
TCGCGGCTGGGCCGTGGAGCGAGTTGTCCTGGATGCGGAGGTAGTTACCGTCGCTGTGCA
GCGACTGGAAGAGCACGGCGGCGTGGATGTCGACGAGGTCGGAGCTGGCCGCCATGAAGA
TGTCGATGATGGGCGCCATGCCCTTGTTGCGCAGCCAGCGGATGATGCCCCACTGGGAGC
ACTGCTTGGCCGTGTACAGCCCCTGGTCCGACGTCGAGCCGGTCCCGATGGACAGCACCA
GGAACTTGCCGCAGTCCGACGGCTTCACCGGGTACAGCTCCTCCCTGTCCTTGACCATCA
TCTTCTTGGTGATCTGCGTCATGGTCACCATCGTCTGCATCTCTCACAACTCAGTTCATC
AGTGTGCTCGGGCAGCGTATCTGAATATGTGATGACTGATGGACGCTTGATTGGTTGGTT
ACCGGATTGTTGGCGGCGACGCCGCCGTCGATGAGGTTGTACTCGCGCTCCTTACCGTTG
TCGTCTTGGGTGTGGAAGTGGTGCGCCGGGAGGTAGGTCGGGGCGGCGGAGGTGCCGATG
CAGATGTCGGCAAGCCGCGCGTTCTTCAGGGGCATGTTCCTGGCCTGCACGCATGATCCT
TCAACGATTTTAGCCCCATGTCTGTCTGATCCAAGGAGGATGGATCTATCTGATCAATGG
CGTAAATTAGCATACGTCGTATGTGGAGAAGATGATGGGCTGGAGAAGCTTGACGTCGAA
GGTGGGGATGACGACGTCGGTGAGCGCGTCGCACAGCCTCGTCTCGCCCAGCATGCTCCT
GATCTTGCCGTGCAGGTACTTGCCGCTGTACCTCGGCCGCCTCAGCGACGCGGTCACCGC
GGCGAGCGCGCACCTCCTGGCACAGCTCAACACAATTCACACATCAATCACCGGTTCAGC
TGGCATGATCCATGGCCATGAGATCGCTCGTGCTCTCGCCTTTGGGGGAAGATGTAGGGC
CCGTTGTCGAGGTAGAAGCGGTTGACGTCCTTGGCGGCGAAGAGCGGGCGGCCGTCCTGG
CCGGGCGCGGTGAGCATGGCGGTGATGAGCCCGCCGGTGCTGGTGCCGGCGATGCAGTCG
AAGTAGTCGGCCAGGCGCGCGTCCGGCCCGTCCAGCTCCTGCAGCCTGGCCTCGAGGAAG
GCGAGGATGGTGCCCGGGATGAGGCCGCGGATGCCGCCGCCGTCGATGGTCAGCACCGTC
ACCCTCTGCCCCGGCGCCACCGGCTGGCCGACCACGCTGCCCGCCATCGCCCTCGTGCTG
CACGACTCGCACGGTCGCCGGCACCAGTAGCTTGCCATCACCGATCAGCCGCTGATGCAA
ACCGACGACACCTCGGTCGACAATCAAGAAGAAGAAGAAGACGACGATGACGACACCGAT
CGCCGCACGGGAGGGTACCCAGATCGATGGCGGTAATTGGTGGATTTGCTAGCGAGTGGC
TGCCATGGCTCATGCCATAGCGCGGGCTGGTCTATTTTTGGAGTGAGAGAGGGCAGAGTA
AACAGATGCGGATGTGGTTAACTCAAGACAAGACATGCGGTGGAAGAAGGAACCGGTCGG
TTTTGAGTCGTGGCGCAGACAGTGCCACCGTGGGAGAGCGCGTCCACCCCACCCGCACCA
AACTGAGGAGAGGACGCCCCAAGTTTTTTTGAGGGAAGAGGACGCCCGAAATAGTGTGGT
TTAATCCCACATCTATTATGGAAGCACGTTTTTTACCCACATATATGATTTACAAGGATG
GAGTGTCTGATTGGTGGGCTGAGATGCTTGTGTATCTGGCCCATCATATATGTGGGTCAA
AAACGTTGCCTAGCGGACCTCAGATCGGCAGAGTTATGGAGACGTTTTCGTCGACGACGA
GGCGTCTACGATGTAGTGTAGTGTATAATTTTCATTCAAAGAAGGAACAATTTTTCTTAC
ACACGTTTAACATTTTTTAAATACATGATTGACATGTTTTTCAAATAATTTTGTTTTTTA
ATCTGAGCTATGATTTTCAACTGTCCCTAACATTTTTTTAATCCAACGAGCATTTGTTTT
AGAAGGTTACGTTAGCAAATTTTACACTACATTGACATTTTTCAAATTTGCATTTTTAAT
AACATCTAAGTGAACTTTAGTTTTGAAATATGTGTATTTACATTTTTTTTAAATATATTG
AAATAATTTTTTAAACCACAAACAAAAAACATGTATGAATGAATGAAAAAGAAGAAGAAA
GAAATTATCGAAGCCTACCCCAGTCTTTCTATTCGCCCCCCCACTAGTGCGTTCCTTTAT
ACCAGGCTGGTAGGTCTGGTCGAGTTAAGGAGGGACACCCCTATATCTCGCCTTCAACGA
GAGGGTAGAGATTCTTGCTGAAGGGGAGGCCGAGATAAGATGATCAACGAGCACGGTGGC
GGGGGGGGGGGGGGG