| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
 |
Predicted Genes from contig_64355
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_73763 |
4 |
1506 bp |
None |
Available |
Available |
LOC_Os04g49780.1, FRAME:+3, EVALUE:8e-41, 13104.m05090 protein transposon protein, putative, CACTA, En/Spm sub-class |
CDS Structure of MLOC_73763
Contig Sequence (5758 bp)
>contig_64355 5758 assembly3_WGSMorex_rbca.fasta
GCCGCTTCTTCGTGGAAACCTTGTGGCTGGAGCCCTCCGTGGACTCTCGCAGTCGTTTCC
CTCCCTGGGTTGAAGTCTCCACTAACATGGACACATGATAGCACTCCTATCGGAACCACG
CCAAAAATCACCGTTCCCATCTTTGTGTTTGATCTTCCTAAACTATATTCCTTACTTGCA
TGTGCAATGTATTTACTTTTTGCTGCCATATATGTTAACTAGCATGTGTAGGGTGCACGA
GACTTGTTACAATTGCTAAAATCCGCCACCAATTAAATTTGGGAAAAGGCTAGGTTTTAA
TTTATGAAAGTTGTCTATTCACCCCCTCTAGACATCCCTTCTAGTGATCCCACATAGAGG
CTCTGGCTACCTCTGTGTGTGCCTCAGCCTCTAACTCACCCTCTGCAGTAGCTGAAGTGG
GATGACTTCGGTCCATCACCACAACATTATCCTCAAACTCTAGCTTGAGTGGAAGGTGTT
GACGATCAAGTAGATATACGTTTTCCTCAACTTTGGAGTTGATCAACATCTAGATACAAG
GAGCATATCCACAAGTTCTCTTCTGGTTAGTAGCTATCCTTTTGACTGTCTCAACAATCA
AGTCCATCACCCTAATCTTGATGTGAGTGTGCACATGATGCAACATGTTGATGGAGTACC
CCCTGATCATCTTGTCATNNNNNNNNNNNGGCATCAAGGTGTACCTCATAATTTTGTTGG
TGGTGGGTAGTCCTGCTTGCAAAAAGTAGGCTTCTAAGATGGCAGCCCACTCTTCAAATG
TAGACTGATATCTGGTGCCTTCTATCATCCATACAATTCTACCATATGGATAGAGGTGAG
ATATAGAGTAGAACTGCATGATCATTTCATCATTCCAAGGTGTAATTTTTCTGCCAACTA
AGTTCTCAATGTCTATTCCCTGAAATTTCACATGAGGGAAGTAGTCTTCATGCTCCTTGA
TGTAGTCCCAATCTACATACCTCATTTCACTGACAACTGAACTTTTGTTCAACAGGAGAG
TCTCATAGAAGTCTTGCTGCTCCTTTGTGTGGAAGAGAGCATCAACTGTAGTTCTCCTCA
TCATAGCATATGGATCAATTACTCTCCACTTCCTGAGCCCTTGATCCTTCCTCTCCTTCA
TGTTTTCAGCCATAGGGTGTTCATCATTGTGTTCTGGCAGATGTAGTCTCAGCTACCTGC
AGCAACATCTCTTTAATTAGAACCCTTGTTCTTTTCAGTGTAGCTATATCTTTGGTAGTC
CTATTTGGCTTAGACGCTTGATTGCATGGCATAACATCTTTCATCAAATTCCTCTGACTG
GAAGGAGGTGGGTTATCAGGTTCCTCCTCTTACTTTTCACTGTCTGGTTACTCAGGTGTG
CATGGTTGAACAACTACTTTGACAAACCTGGTCCTCTGCCTCTTTTGACTTGACTTCTTG
GCTAAGACTTTTGTTCTTCTAGCACAACTGGGTTGCTCTGAAGATAGAGACAATCCTCTC
TTGGCTGCAACAGATTCTTGAATCTTCCTGTTGGTTGCTTCTTGTTCTACGTGTTAGGAG
TGCTCACCTCTGGGACAAAGTCTACATCTTCCTCATGAGAGTTTAGTTCTTCCTTTCCCT
AGTTGCTGCCTTGGGCAGGTCGTGGATGTTGGGGGTACCTGGGTCCGGCTCACTCCTCTC
AGGACTACTGCCTAAATCAACTTCAACACTCTGCTCTTTGAAATCATTGGCACTGTCCTC
TGAGCCTCACATGGTGAATTTATACAATAGAGTTCGAAAACATGAGCTTTAAAAACGCAA
ACATTTTGCAAACAGTGAACTCAAAATTTTAGTTTTAGAATTTTAGAAAGTGGGTTTAGG
TTCCATCGAGTTTTAGTTATTGGAGAACCTGAGACTAACCTTCTCATTCAATAAATACTT
GGTCACCTTTTTGGTTTCACCGAGAAAGGCAACTTGGTCTTACCGAGAAATTTCTCACAA
ACCCTAAAACCCAAGTCGGTCGGACCGATTTGTTTCCACTTGGTGACACTGATACGCAAT
TGGTGGAGCTCTAAACCTAGTTTTCTATGTTTGGCTAATCTAAAGGAGTTGTTTTGTGGA
TGAATGATTTGTAAACATTGGCAAGATTGTGAACAAAACCTAATGCGCAAGATTTGGAGG
ATGGAGTGCACAAGGGGTCGAAAATTATGCTAATGCGATGAAGGATTCGCGATTGCGATG
ACGGCAGGGATGATTGCCATCGACGGTGATGGACTCCTGTGGTGAGGACGCGCGGGAGGC
AAGGAAGAATTCCGAATACGTGAGCGGCGGTAGCACAGGGTTGCGGGGGACCAAGGGGTC
GAAGAAGTTTTCACTTTCAGGGGTATATATACCCTCATGCTGTCGGTCACACTTATTCCG
TAATTTTGGTGCCACCAAGTTTCTTAACTATTAGAGGAGAGGGAAACTCGGTGAGGCCAA
GATTATAAAACTGTTGGTACCAAGGTCCAAAAACCACATCAACCCTACTGCTTTAGTGAA
ACCAATTTTGTGGAGTTGGTTACACCGAGTGGCACAAGAGAGGTTTTGGAATTTGGCTTT
TGTTGAAATAGAACTCCGGGTGCTCCTCACACAGCGAGTCCAAAAAGTGCTTGATCAAAT
TTAGTGATGAAGCATGAATAGAATTTGAGACGAGAAAGCATAGATAGGTAGAGACGAGTA
TTTTAAAATTCTTACATATCCAATTGTCCAAAAAAAAGCCAAATAACTACAATTGGATAT
CCTTGAGTCACTACAGGAAACAACTATTTTGCCGAGAGGTATCATATTTGCCGTTAGCAA
ATCGTCGGAGTTGACGACAAACGGTCGCTTTGTCATCATGGGCAGACGAAAAAAAAATAC
TATAGTCAAAAATAACAAAAAACAGACAGCAAAAAAACACATGACAAAATACAGTTTTGC
TGTCAACTATCTGAACAGATGATGACGAAGGAAGCATTTCCGTCGTATTCTTACGCTTAG
GCTGACGGCAAAACGTAGTCCACGGCTGTGCTTAATTGGCCTAAACACATGCATGGTTTG
CCGTATTTTATTTGGCCCGGCTGACGGCACCAAAGAAAGCTTTGCCGTCTGCTGCTCTAC
ACCGATGACGGCAAAAACTGAAAAAAAATGAAAGAAAACCCAACCACCCTACACCGAAAA
CAACTCCCCGCCCCACGTTTCTCCGGCGACCTAATCCTCTCGCGAGCTCACCTCTCGCGT
GTAGAGCTAGTGAGCGTTCCCCACCTCCGTCAACCACCTCGGTCGCCGCTATCGGCCTCC
CCGGTCACCGCCTCCTGGCCGCTCGCGCCCCTCGATAGCGATGGGCCGCTAGGTTCCTGC
CCGCTGCCACTCTCACTCAATCCGCTGCTGACAACCCTCGGCCGCCGCTACTCTCACTCA
ATCCGCAGCTGACGTCCCTCCTCCGCCACCGCGGCCATAGAAGGAGGCTAACCCAAGTAG
CTAATGCACGTTCCTCCTTCAGTGCCCCCGCCGTTCCCCTTCGACCTCCCGGGGCGTGGA
CACCATCGAGCTCCGAGCCGGCGGCGCGACTGGCATGAGCATGAGCAGGAGCAGCAACTG
CGTTGGCCGTGAGCCCAGCCACCTCCTCGTCCTGGAAAGGTGAGGTTCACTTCTCTCTCC
ATCCCCCCGGAACCTAGCGGCGGATCGAGTGAGAGATGCCTATTACACGTTTTAACTTGC
AGACCAACTACAAACCAAGTATGCCCAGTTACTAGCAGCTTTAGGCAGCCGAAAACACAC
GCACAAGGTAAGCTGGCGGAAACGAGAAACCAGTCAAGTTTTATCCCCACAACAGGTGCT
TTTTTTAACTTTTGATTCCAAGTCCTAATATGTGTAGTGTGTGTATTTATGCTTTTATGC
TAAGGTGTCATCTAGAAAGTGGAAGTCTGGTTATAGGAAGGGACATGAGGGAATTCTGTT
GCATAACGTGTCCATTGAAAATTTGAAGAAATTGCAATATATAAGTTACTATTAGATATA
TTAAAAAAATCTCTACAACTATTTGTGTATGGGGGCCCCACTTTTCTCTTGCACTGGCAC
CTGACATCTCAGGGCCGGCCCTGCGGGCAAGAACCAGCGATGGGGTGGCCTGGGCATTGT
CCTCCTCTGGGACTATGAGCTTATATGAAGTTTATTAATGCTGGTGCTTTAAGCACCATG
AAATACTATGCACCACTGAGGCTCACTATTCCGTGAACTTTAAGCACCATGAGAGTTCAG
TATAATGGAATAGCAATATCTTTGGAGATATAACAATTATGTAAAATGTCATTATTAATA
ACTGCCAGAAACCAATTTTAGACATGCATGTGAGTGTTTACCTGCCAATATTAATAACCT
GAAATAGACAAAAAAAACAATCCGATGGAATTCAAAAGGTGATGTGAAATAGACCAAAAA
ACCAATCTGATTAAATTTTCTTTAGGTTAGATGTTAAACTGCGAGATGATGTTGTTCATG
TTGTTTATTAGATTGTTGTGTAGATAGGGTTTCGTTTTCGGTGCTCTACTTCCGTTCGAG
GCAAAATTTCGTTAATGTCACCCCGTTGTTCTCTGGTACACATTCTGTCGGCCTGTTGCC
GAGACGTGTACCAGCAGAACAACGGGGCGGTGTTACTGAAATTTTGCCTTGGACTGGAGT
AGAGCACGGGGAACGAACCCAATCTACACGTACTCGGGTTGGATTAGGACCCATCTTTAC
CTATTAGAGATAGGATTGAATCCACGAATACTGGTTTCCCTTTTGTATGATAAAAATTAA
AACTGTGGGGTAAATAATATGACAAAAGTAATTAGTTATGTATCTACATTTAATTACATT
ATATCTAACTTAATGAATTTGAATAAAATACATGTATTGTCAGTGCAAGTACCGTTATGG
ATGATCGTGAGTGGATCTATAGTAGCCACCCTAGTCAGGGTGGCATGACCGCTGAGTGGG
TGGACAAGACCAATAAATTCATAGAGGCAACATTTGCTAGTGGAAAACAAAAATTTGGTG
TCCCTACTTGAAGTACAAAAACTATAAAGAAGAGCCAAATAAGATGATGTCATTACATCT
GCAGAAGCATGGGTTTAAGCATGGGTATAAACGGTGGACCTTCCATGGCGAGACTAAACA
TAGCAGAGAGGAGGTCGTTCGTCGGTACACAAACGATGAGAGTATCGGGATCAATGTGCA
TGGTAGCTAACTTCAACGATGCACGTGATGCGGGATCAAAGGAAGAACGAGAGGAGCCTA
TGAGGGCGTTCTTAGAAATGTTGAATTCGTCACAACAANCTCTTCACGACTACACAGATC
AATGCCAGTTGGATGCCATCTGACAAGTAATGTCTATGAAAACCCAGTTCAACATGAGCA
GAGATAACTTTGATTCAATGATGACCCCTTGGGGTCGCTCTCTCCCTGAAGGGCACAAAC
TGCCTAAAAGTTGGTACGAAGCAAAGAAAACCCTAGGTGCACTTAAGATGTTGTATTAGC
AGATATACGCTTGCCCAAATGGATGTGTCTTATTTACGAAAGAGTATGCAGCCGACAAGT
ACTATGCGAAGTGCGGATCCTCTAGGTATACCGAGAAAGTCCTCCCTGATGGTATGAAGA
AGCAGACCAAATTCCCCGCAAATGTTCTTGATATCTTCCAATCCTGCCAAGAATTCAACG
CCTTTACTTGAACGACGATACAGCCAAATAGGTGGTATGGCACAAATATGGGATAAGA
