Contig Data
morexGenes
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Map Locations of contig_6417 (4455 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_6417

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73693 2 2544 bp MLOC_73693.1 Available Available LOC_Os03g59650.2, FRAME:+3, EVALUE:0.0, 13103.m06547 protein BRCA1 C Terminus domain containing protein, expressed





CDS Structure of MLOC_73693






Contig Sequence (4455 bp)

>contig_6417 4455 assembly3_WGSMorex_rbca.fasta
AACTAACTTGAAACAGAGCATCACTCAGCCTAGTTATGCCTCGCATGATGTAGACATTTG
TTCTTCTGAGGAGCAAAATAAAGAATGGCGCAGCCAAGATGCTTGTACCAGTGACCATGT
ACCTGATTCTTTGGCAGAGAACAGTTCTGCTGGTGCGCTAGTAAAAGAATCAAGTCCAGG
ATGTGTTCCTGTAAAGCAACCAGCTCGAGATAAAGCATTCTCTTGCTCGAGAAATAAGGA
ACCTGCTTTCCAGAAGTTGACTCAAAACAACCATGATTTTACTGAAAACATGAGGAATCC
AGTAAGAGGTCAAAATATCACGAAGGTAAATTTGTTGCCCATGGACATTTTGTTATAACA
AACTTAATCGATCCTATGTGTATCTCATTCAGCACTCTTCATCTGTGTAATTACAATGTG
AAATGTATTTCCAGGAAGCTGGAAGAATTGTTGAAGAGACGAAGTTTGGTGGTCGTGCAA
GGAAGCATATAAGAACTAGCTTCATTTCGGAGTCGATGGATAGCATGAATGAGTGCTCTC
CTGCACCTAGAGCGATATCGGCAGAAATGGTTGCCTCTTCAAGAGCATCTTTTCTCCAAA
AGGATGAAGGTTTCCATGGAGAGGATCAAAGTGCGGAGTCATGCCATCAAGTAGTATGTT
CAAGCTTATCACCTGAGGATCCTCTCTGTTCATTTGTTCCGTGTAGCATATCTTGCAATG
AAGTTTCCACTAGTCAACCTCCTGAATGCAAACAGAGGAATGAGGAGAAGAGTAAACCAG
CATATCCCAATGAATCTCTGAAGAATGACCTAGATGTAGAAGCCAGTCCATCTTCTGTGC
CGTTAGATACGGTAGCAGAATCTAATTCAGGGAGGCGGAGAATACACAGTTCACTCAGGC
CTTTTAGCATGCTAGGACGACCTATATCAAACATCTCGGGAGGTAGTGTGGCTCATAATG
ATGTTAATGTGGCAGTTTGTCAGAATGAGAGAGGCACACCGATAATCTTAAATAAGAAGA
TACAGCGTATCCAAGCCTCTAATCAGTTCATAGAAAACAATGCTGAAGCTGGAAGTTTGA
ATGGTTTTTCTTTGGTTCAGAAGAAATCATCTGATGCTCACAATGATAATGAGCATCATA
GCAAAGAGCAATATATCCCATCAGAAGTTTTTCCTCAACCCACAACATATTTGAGTGTTG
CTAAACGATGCCTTAAAAGAAAAGGACCCCAATTGTTGAATGCTAAACCTAGTACTAGAC
AGACCAAGAGCAGAAGGGTTAAATCTCGATTCAGTTGTAAGTTCTGATTTATTATCTCTT
ATGCTAGATATGTACTGTATATCTTGAGTAAATATATGCACGGTCATTACATACTTATGA
TGATCCTCACTTTTGTATCTTTGCAGGGTCTGAAAGCAGAGTTGCTGACATGCAGGAGCC
CAGGGAATGCACTGGCAAAAAAGAAGCCATATTTCATAGACTAGAGTTTTTGGTGACTGG
ATTTCAAAGTCATAAGGAGAAAGAGATTGTCTCTGTAATAAGGAAATTTGGAGGTTGTAT
TCTTTCTAAAGTGCCACCCTGTCCATTTGATAAAAAAAGCAAGCTTGCAGAGCTTGTGAG
GTGGAAGCCTCCTGTAGTTCTTTCCCCTAAAAAGGTTTGTTGTACCATTTCCATTTTGTT
TGTTGGGTACCATCTATCGTTCATCATGTATCCTTTTATAGTTTTAGTATATGCTGTAGC
CTGTAGGAGAAAATGGTGTAGGGCTGTAGGCTCCCATTTAAAATTGCACATTCATTTTTT
TACAGTATGAAATTGCACTGTGTCTGATAGATGTTTGTTGCAACAGGTATCAACAGCTAA
GTTCTTGTATGGTTGTGCTACCGATTCCTGGATTTTAAATTCCAATTGGCTTTTTGATTC
TCTTCAAGCTGGTTTACTGTTGCCACCTGGAAAGTAAGCAATGACACCTTGCAGCACACC
TATCCTGTGAAAATGGAATTTTAAATTTTATCACATCTTTGCTCATGAAAGCATCAGTTT
TCATATCCTTCTTGAAGTAGTTGAAGGAAAATTTCCAAAAACCTTAAAAGTGTGTATGCA
TTTTGAGATCTGTCAAAAGCCCACATGAAGCTTTCTCAATTCGATGCCAAGCTCGTGTAA
GAAATGAAAGATATTTCATTTAATGGGCTAAATTATCTGAACTTAAAGTCAAGCAACATA
GGGTACCTAAGAAGTATCTTTGTAAAATGGTTATCTAAACATTGACATGATTAATTAGCC
AAACTGTTCATACTGTAATTCTGAATATTTCACATACAACACATGTAAAGTCGATGTATA
TGCTTTTAGTTAAGTATATTAGTCCATCTAGATGAGGTTGCTTTGTAAGAATCCGAGCCG
ATCGATTCTGGTGTCAAACATACTCAAGGCACTTTGCCGTGAAGATTGTTTATCCTAGCT
TTATTTTCAGCAACTAAAAATTCATCGAGGAGCATCTGCTCTGTTGTCCATATGTATTAG
GTTAAAATACTTTGTTCTTGATGCTCAACTTTTGATATACCCTTTTGCCAGGTACTTAAT
TCGACAAAGGCATACAGTGGAGATTTCAACATTTGGCCAATCAGTTTACCTAAGAAATAA
TAAATTGGTATTTCATGGAGTAGGATTCTTGATCCATGGCAAAATCAGCTTCTGTTCAAA
ATTCTCGAACATTATCAAGGTATGTTGCAAGTCTGGTGAGAAAACATGATGGATAACCTA
CTAATCAAGCAATATTTGTTTAGTGAATTGTAATACATCATATACTATTGTCATAGTTAA
GAGGCATTGTCTTAGTTCACTCTTAATTTGATGTATCTGATTTTTTACTACTGATTGTGT
CACATATACATGACTAGTTTCCTTGTCTACATGATGTGACCCTTACATTATATTTGTGTT
CCACAGCATGGAGGTGGCCAAGTTTTTGTATCTCTTCAAGGATTAATTGAAAGCTTGGAG
GATAAGCATTGCTCGCGTGGAATCATTCTTGTTGCAAATGAGGCGAGCGCATCACGCCAT
CTAAGTCATTGTGGGCTGGAACATGACATAAAAACAGCGGTTAGTTGAATTTTGAATGTA
GAAACTTCCATTCCAGATATAGGAAATGACTGAATATAAGCAGCAACTGCTCAGATAGAG
TAGTCTGTCTTTCAATGCTGGAATACTAGCTCTATAAGTAAATACAGAGAAGTAATTTGT
CACAACATGCCTTAATCCATTGTCTACCTCTTGTAATTCAGTCATGTTGTTTCATCTTGA
CCTTCTATAAAACTAACTGATTAGGATCCGAAAGGCTTGCTTCCCTGCTGCCAATAAGAC
ATGCTACTTGATTCACATTATACATGGCTGTATCGCTGTATTTACCATTTAAATGTTTCC
CTACACTTTATCCTTTTTTGGAACTGGTACTCGTCATTTCCAGTTCTTCTGATTCTCCCT
TTATCTCCCTTGCAGCCAGCAAGCTGGATCATAGGCAGTCTGTTTTCCGGGAAGCTGAGT
CCCCTGAAGAAAGACCGCTGTGCTGCGTTTCGTCGGATTAAGATGCCATCATTCAAACAA
CAGCGTGCATTTGAAATGAGCCAAGAAATATAGTTCTTGTCAAGGAAAGCCTGGAGCACC
ATGATGGTCCAATCGCAAGCAGAGTTTTGAATGGCATGTTTCTGCCACGACTTGTATCCA
CCTGTGCTGCGTGGAGGCTGATGCCTGTGTTTTCATCATTTTTACAAATATTGGAAAGGG
TCTGACGTCAAAGCACCTGTAATGGTGATATGATGTACAGGTGCCTATATTCGAAGAAGA
CCAAGGGCTAAACTACTGGGGTGAATGACGCCAAACATCATTCAGGGGTGTGTTATTTAC
TTTCCTGAAGATCGTAATGTTCACTGGAGGCTGTACACAGCTTAGAAATCGGCAACTGAG
CAGAAATTCTGTAGTGCATAATAAAGTTCTTTCTTGGATCGGTAGACTTTTCGCCTGTTC
CATTTCATAGAATTCTGTGGTGTATAACATGTGAGAACATGCGTTTGCAGATGGGACTAG
TCCAGACTCCGGAGTATGTATAACAGTGGTGGAATACTGCTCACTGCACTTACAGTCTCC
CTGCCCATATTTTTCGAATGTTGTCGTTGTTGCAAGTACAATGCTAAAGAAATATGAACG
GAATTTCTTTCTCTTATTTGCTCGCTCCAAGCTACGCAAATAATGCTGCATGATGTAAAT
ATGTTACTGTTTGTTCAAAGAAATGGGTCAGGCCGGCGTAAGCCTACAGTAGCACCGTCA
AAAAATAAAATATGAAGGGAAGTGTGGCATTTAGCTGTATTTTGGTGCTGTGTGGCCAGG
CCTTAGAACTTCTGTTTTGTGATGTGAGGTTTCCTTTGTACCTTTCGGGTTCCCTGATGT
TCGCGTGTGGGTGGG