morexGenes - Barley RNA-seq Database

Contig contig_64092

Source Contig contig_64092

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_64092 (6951 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_64092

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73658	2	492 bp	AK251447.1	Not available	Available	None
MLOC_73659	1	2302 bp	MLOC_73659.1	Available	Available	LOC_Os01g57230.1, FRAME:+2, EVALUE:0.0, 13101.m06070 protein BTBN1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed

CDS Structure of MLOC_73658

CDS Structure of MLOC_73659

Contig Sequence (6951 bp)

>contig_64092 6951 assembly3_WGSMorex_rbca.fasta
CCTCCGTCCAAAAATTCTTGTCTTAGGTTTGTNNNNAAATGGATGTATCTAAATACTATA
ACATGACTAGATACATTCATATCTAGACAAACCTAAGACAAGAATTTTGGGACGGAGGGA
GTAGATAGTTGGATATCATCTCCTCTTATCTACAACTCATTCACATTATTTAACTATGCC
TATCTTATTGTTTCTGGTGTTACAGTGGGTTTTTGCCGGCAATTGACGTCATAGGCAGGA
ATGTTATTGTGGGAGTAAGTATCTCTGTCCATCTCGAGTTTTGTTTGTTGTTGATTTGGC
ATGGTTGCTTTTCTTGGAAACCTGCTTCTCCCGTATAGTTGGCTAGTCATTTACATTGTC
TCCACATTTTCTTCTGGCAGATATTTTACTTTGTTGGATTCGGGCTGTTCTGTCTTGAAG
CACTGCTCAGCATTGTGGTCATCCAGGTGCGTTAACACGTGACCTTTTGTCGTGCCTTGT
GTTTCTTTCGCCAAGAGAGATTATCATTCTGAACTTGGTCACTTGGAATGCAGCAAGTAT
ACATGTACTTCCGTGGAAGTGGAAAGGCTGCTCAGATGAGACAAGAGGCAGCACGTGGTG
CCATGAGATCGGCCTTCTGATAGATGAATGGATGAGAATAGGATGTGCCAATCGGTGATG
GCGTCTGGTCTTGTACATCCCTATACATATCTGTGCTGCGCGTGGCTGAGAGAGAATACT
TGTAGCTATAGATGTTCGTGCATTCTTGTAATATATACGAGTGCTTCATTCCTTTCCTAG
GCCCAATATCCATGTGCTTATATGCAGCTTAATCTTTTGGGAAATACAACTTCAAACATC
ACTCATTTCTCTGACGAGCTTGGTTGCAGTATCACTATATATGGTTAATGTATGTGAAGT
GCTAAAACTAGTTTATTTCGCACCATACAGAGCTGAAGAATCTTATTGCATTACACTATA
TATATCTAGTCCGTTAAATATAGCCATCTAGCGTTAATTTAAGAATGAAAGAACTATGCC
GTTTTGAACAAGTGAAATGGGAGACGAATCTATAACTCTAGCGTGAGCTGAGATTTCGTA
CTTTTTGCGGCGCCTCTCTCTATTTGCCGCTCATGGCAGGCTGCGCCTGCTGCACCTTGG
CCCCGAAGCCGCACTTCCTGGTGAGGATGCTCCACGACCTCCGGGGCTTCCCGAGCCGCC
GGATCTCCTGCTTCATGGTCACGCACTCCTTCTCCAGCTCCGACACCCGCGCCCTCACGT
CCGTGATGGCCTCCCCTCCCTTCCCCTCGGGCGTGCACGTCATGGCGACGGCGTCGTCCT
GACCGGCCATGCCGCTGTCCACGACCGCACTGCCCTTGGGGACGATGGCGCCGGCGTTGC
TCGGGTGGTGCGGGTGAGCGCCGTCGGTGGCCGCCGCGTTGTCCGACACGAAGAACCACC
CGGCGATGGAGGTGCGGAGGCGCAGCTGCTCGAAGAAGAGCACCTGCACCACCACCCGCA
GCGGCAGCCGCTCGTTCTGCGCCGCGTGCGTGCACGCCTCCAGCGACAGCTTCTGGCAGT
TCATCAGCCGGCACAGCTGCTCCCGCTCCGACTCCGACAGCCACGGGTGCGACTGCACGC
AGCTCAAATGTTAGCGAGTGAGATCCTAACTCAGCAAACCGAGATTTGTCTGTGAGTAGT
TGTGACCTTGAGGTATATGTCCATGGCGCGGTAGATGCCGTCGTCGACGGTCCGCGCGTA
GTCGGGCACCACGGCGGCGAGCGCCTGGAACTTGGGCAGCTTGAGGTTGGTGTCCGGCGC
CACCTCCGCGAGGTACCCGTCCATGAGCTTGGCCACCATGGCGATCGGAGCCACGGCGGG
CGGCGTCGCGGCCTGGGGCAGCCCCAGCTGGCTGCCCTCCTCCGCCAGCGCCGGCGACGT
GTACCCGGTCCCCAGCCCGTCCATCGACGACATGAAGTAGTCCAGTATCCTCTGCACGCA
ATCGATGTCGTACAGCGTCTCCACGGTGTAGCCGAGGTTGGGCACCAGCAGATCGTCGAG
GGAGGCGTCCTCCAGCTGCGCGCCGATGCGCCGCTCCAGGTTCTCCCGGCACAGCGGGCT
GGCGTGGAGGAGCATGGCCGTGCGGAGCAGCCCGAGCAGGAACTTGGTGGAGGTGACGCC
CTTCTTGGTCGGCACCAGCGCCACGATCTCCTCCAGGAAGTACCTCTGGTCGCCCTCGGA
CGTCCCGGAGAGGCTGGCGGTGGCGGAGCGCGGGGTGGCGCTACGGCTGCCGGCGCCGCC
GACGTAGTCCGCGAAGCTGGCGTTGCTGAAGCTGGCGCTGCGCTTGAGGCCCGGGAGGAG
CCGCCCCGCGTAGAACATGATGGCGCCGGCGATGCTCTCGGCGCGCATGCTCTTGGCCTC
CATGGCCTGGATCAGCCGCTTGAACATGGGCAGGCTCAGGAGCGACACGTCCTCGTACCA
CCAGTCCATGGCCGAGGCGGCGGCGCGCGGCGTGTCGCCCGAGCCGATGCCGTTCCAGAG
CGCGTCCCTGTCGAGGCTGGCGGCGTTCTTGGCGCCGTGCGTGGACCAGGCGGCGGCGTC
GGAGGCGCAGGCCTTGGAGGCGAGCGCGGTGATGCAGCGGGGGACGATGTGGAGGTCCTC
GGCGGTGGGGAGCACGCCCTCGCAGGTCTCCAGCGCCCTGACGCAGTCCTTCCAGTTGGC
GAGCACGTCGGCGAGGAACGACTCGGCCTGCGCGATCAGGTTGCCCTCCGCGTACTCGTC
CGTCATGCCCAGGTACTCGGCGGCGCACCGGAGGCACACCACGTTGAGCGCGTTGAGCTC
GATCTTGACGTCGTAGCAGAAGCGCGCCGCCAGCTCGAACGCCTTGGCGCCGCCCGGGAT
GTCGTCCAGCTGCAGCGTGCACATGCCGCCGTCCGACGCCGGGTGGTACTCGCTGATCAG
ACGCTGCAGCACGCCGCTCCGGCTCAGCAGCGGGAACTGCACGCTCACCATTGTTGATCG
ACGCACCATTGGTTAGTCGCATTAACGCGCGATCGATCGGTTTATGCAGTTGAGTTGATG
AATGCGGAATGTGACGGCGACACACTCGTGCTAACCTTGTGAAGATAAAAGGACACGTCT
CCTACTTCGACGACGACATCACTCTCGAGCTCGGTCATGCATCTCCTGGGGAAAAGTCAA
GACGGATGGTAAGCATCTGAAATTCTCATCAAATTTGCATCCGTGCTCGTGATCCGCTAT
TGGATCGAAACGAACGATACTGAATGGGATAAGGCCATTTATGAACTAGGAAATATATGA
AATGAGGAAGGGGGATAACCATGTGAGGCCTTCGAGGACGAAGATGTCCGGCTTGGAGCC
CAGCTTCATGATCACCATCTTCTCCTCCCAGAATTATTCAACCTAGGCCAGCGGATCTAG
GCCTTCTTCTCTCGGACTGAGCCAGGCGCCACCCCGGGGGAGGGAGAGGGTCTCTGTCTA
GTGGATCTGGAGGGTGGTCTTTTGAGGAAACGGAAGCCGAGGGAAGGGTGCGCGCAAGGA
TTTATGGGCAGCGGAGGGAGATGGGTTGCTGCGCGCTTGCGCATGCGGGAGGGAGGGAGG
GAGCACGTAGCTGAGGTGGCGCGCGCTGCAGGCAGATGGGAAATAGGACCAGCGACATGC
ATGCAGGGACAGTTCAAAGCTTGGCCCTGGTCCAAAGGGGGAGAGCCGGAGAGGTATGAC
ACCTCGCAGCTTACATGTTGAAAAGAAAGAACATTATCTTTCTAAGTCATTAAAAAAAGT
TTTTTTTTTAAAACGGAGGCATAAGATTTGCCTCATCCATTAAATAAGGGAAAAGAGTTA
TAAAATGTTACAAGGTCTGCCCAAACCGGCATGGCAATTACTCGCGGATTACAATAGACC
CTAAATCTTTTGCGCGTGCGGCGACCCAAAGATTAGCCTTGTCGACGATAGCTCTTAGGA
GAATTGAGGGCGGTGCACTCTTGTTACGGAAAACACGAGCATTTCTTTCATTCCAAATCG
TCGAGAGACGAGCATCGTGAGGGATGCTAAGGATTTTCTGTTGGGGTTACGCATGTCGGT
GCGTCTGTCCCACCATTCTATGACCGACCTCTCGTGATGCCAGAGCTCAGTGTTCAAATG
GCGAAGACCGTACTTTTGGATGACGAGGTTTCAGAGCCGAGTTGTAAAGCGACAATTGTA
GAAAAGGTGTGCGTCCGTTTCCATTTCCCTTTTACAAAGAGGGCATAACCCACATTTTGT
CCAGCCTCGTCTCTCAAGATGATCGGCCGTCCAGATACGGTTTTGCAGGAGTAGCCAACG
GCCCTCGCGGGTCGAAACCAGCGTCAGGGGCATCGGGTCAAGCAAGACACCGGCTCAAGC
TATGGAAGATGTGATGGCCGAGATGACCAAACTTTTTGAGGCACCGATGACCCCGAAAAA
TTAGGAGGAGCGCAATATGGAGTCGACTAAACTTCGTGCCCAGATGACCAAGATTCAGGC
GGAGATTGATGCTGAGAATATTCATATGGCAGAGTTGCAAGCTCATATTCGTAGTGAGAC
CAAACAATTAAAAGCGGAAGCCTGGCAGCTAGGTCTTCATCAAGATGCCTCGGAGGCAGT
TCATCACAGGAGGCACGAGAGCCGGTTTCCCCCCAATCTATAGCGGACACGCCTTTTTGA
CACTCCGCGACGCACCCCAGACACTGGATGACCTCCGGAGAATCAACCTCGTTAGCCAAT
CGAGCAACGCCAGACAGATCAACTGCTGCCGGCTCAATCGCCGCCTGAGCGATTCCATAC
ATCGTTGGGTCACTTTTCAAACTCAGTGGATAACATGCTGGCGGTGACTCGCAATCTCGA
AGCACTACCGATCATAGGAAATACCCCAATTGAAGTCGAAGCCATGAACGCCATTGAGAT
GCTAAAAACTGCGATCACCCAACTTGCACAATGTTCTTATAGTTGTGATCGGTTTCATTT
ACACCCTATGCAAGTTGTAGCAAGAGCCGACACGATTTACCAATAGTCTCAAGCAGTGGT
CGGATACAACGACCCCGTAATTCTCCAACCCGACATGTGGTTTTAGACGCCCGAGCGATT
GTGAACGCGGCTCAGGCCTCACGAGAAGCAGAGGCAGTAGCAACGGCGGGTCAGGTGCCC
CTACTACAACCGACTTGTCTGCTCAACGGCGGGTCTAAGCAGTAGAACAATTGGAGTCCC
CTGCCTGGCCCTGGTTCTTTGCCAAGAGAGTATGCCCAAAGATTTTAAGGGTCCTCGCAA
GGTTCCCAATTACACGACTAATCTCGAGCCACCAGCGTGGATTGAAAGTTATGAGTTAGC
ATGGATATGCTTGATGTTAGCGATGCCATGTGTACTAAGTATCTAACCAGGATGTTGGAG
GGGTCGGCTCGCACGTGGTTGAAAACTTACCCCCCCCCCCCAATTCTATCTACTCTTGGA
CAAAGTTGAAGGTACGTTTCATTAAGAACTTCCAAGGCACTGGTAAGCGTCCAATGATGA
TTGTTGATTTACATCATTGTGTTAATGGACAGATGAATCTACTCATCATTGGATTCGCTG
GGTCGCAGAGTTCATTCACTCATCGCACATTATCACACCTACCCAAGCTGATTTGATTTT
GGAGAGAAATTGTCACTTCCACCACTTGTTCAAAAGCTTTGACGCCTCAAGCGGAAGGTT
CAAGATATGGGAGACCTCATGGATGTCCTTACTAGGTAAGCTGAGTCACACACACGAAAG
ATCCTGGCTTAGATGATGATAAATCGGGCAAAGGGAAGAAGCATGACAATAGCAAGGGTC
ATCAACAACACAATTATGGGTATCAAGGAAACCATAACAATCACGACAATGGTGGAAAAC
ACAAGCATCCTAACGGTGGGTCAGATTTTGTTGCTAACACTAACACTGGTTTCAAAAATC
AGCGACGGAACAACAATTCTAGCAGATCTTATAGTGGGAACAAGCCTCACAATTATGAGG
AAACACTTAAAGGCCCTTGTCCCAAGCATAGTTTTTGAGATAAGCTCGCCGCTCATTCAT
GGGAGAATCGCCACTTCATGCAGGAGTTCCAGAACTAAGCTTTTCAGAATTTTCAAGGAG
GCAATGGTGGCGGAAATCTGGGTCATCCTCGCAGTTCAAGAGCTGGCTCATCTAGGGGCT
TCACAGGTCGAGGATCTCATGGGTCCGCCGGCTTGGGCGCTGGTTACTGACATCATGACA
ATAATGATGATGGACAGTGTCACACCCTGTGTTTGTACCACTTTGCCACATTTTGTTTTT
TTTACAAAATTTAGAATCATTTAAAATATTTTGCATGCTTCTGATGTTTGATCTGGTTCC
TACTTGCTTGTGTGATTGATCGATTTTAAACCACCAAAACTCATTCTTCTCTCAAGAACT
CATCTCCTTCCAAACCTTTGCCCAATGATAATGCGATGTGTATAGGACGAGAAACTATTT
TTAGAAATATTTTTTCAACTAAAAAGGCACTTATTTATTTTAAGCTTTCAAAAACACGTG
AGTTGAGATTTGTACTACAAGTCCTCAATTTAAAAGAGAAGTTTTACCCCAAAGATTTTG
TTTGGATCCTATTGTCAAAAGGACTTTCCAAAACCACAAAATAATTATTTTAGAAGATAT
TTTCCAATTTTATTTAAATACCTCTTTCTGAGACTAGAAAGCTATTGTATTGGGAAAATA
TTTTCTTGTTTCAAAAATATTTGGGAAAATTTAGGGAAACTCATGGGACATATATTATAT
ATATATATAAGAGTTTTAACATATGGCCATGTTCAAAATATTGGACAAAATCCCTCAAAA
CCCTTTTTGCCTATTTCAAGATTTTGAAATATTTCTGTAGGAAATATTCTCAATAAATTC
CAAGAAAATTCTAGTAGGTCACACATGCTATATCTTGCCAAGTTTCATCTC