morexGenes - Barley RNA-seq Database

Contig contig_6402
Source Contig contig_6402
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6402 (6093 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_6402

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73607	3	2903 bp	MLOC_73607.2	Available	Available	LOC_Os09g24210.1, FRAME:-3, EVALUE:2e-38, 13109.m02296 protein expressed protein
CDS Structure of MLOC_73607

Contig Sequence (6093 bp)

>contig_6402 6093 assembly3_WGSMorex_rbca.fasta
CCCCCCATCGGCCCGCCCTCCCAGCGGCGCCACCTCTCCCTCCGCCCTGCCCCTCGCCTA
GGGAAGCACGGGAGCCGGTGAAGTAGTCGTGGCCGCCGCGCTCCAGGGCTTGCTCGATGC
GCTCGCCCTCACCCTCGCCGTTGTGGTCGTCGGGATCGAGGGACTCCACCGGGGCAAACA
GTGGCCCGGCGGCGCGCAAATAGGCACGAACAACGATGGTGCGAAGCACCGGAGAGGCAT
CGAGCTTCGACGATGAGCGCGCGGTGGCCCGGATCGAGGTCGGTAGCCATGCCCGAGCCC
ACGGGTAGGGGCTAGCGGCAGCTCTGGCCTCCGAATCGCCACACACAGAGGTCGTCTTCT
CCTCCTTCAAGCACGTCGGCAGTGCAACGGCCGGCGCACGGAGCGGCCAGGACCTCCCGG
CAGCGACGGCGGCATCGGAGCAAGCAACAACGGCCGGTCGCAGCACAGCACGAGCGCGAG
CAGCAGCGACGGGGCGCAGCACCGGAGCAAGAAGAGCAAGCAGCGGCGCGCATCACCGGA
GCAAGCAGCGGCGCGCCGACGAGCAGAACGGGCGCAAGCAGCAATGGTGGCGAGCAAGTC
GTAGCTGCGGCGCACGGCATAGGGGCACCCACCCAAGCAGCAACCCTCGTCGGTGAGCTC
AGCCGCCGCCGGGGCATTGGCGTGGGCGAGAGCGCACGAGCACGGGATGGCCGGTGACAG
AGTACGGCTGAGCTTGGGGTGTCAAGGGCCTAATTGCATTTTTGTTTTCAAATTGAAGGG
TACATCTGCAAAAATACTAGGGACTAACAATTATGCTACATCATCAAATGCAGGCCCACA
TATCATAAGCATGGTTAAAATGTCCAAATAGACCGATAAGTGGTTTTTGCAAAAAATTAG
GCACGCATTATTTGTTTTTTGCAACGAATCTATATAAGAGTGTTTTCTGTAATCGTCAGC
TTCAATGTGATGGTTTTCTGCAATTAACTCTAGAGATTGGGAAGATGGCCATATACAACA
GCTGTGAGTGGCTAGCTGTTGTGGCATTTCTACTATTTGTAACTTCCTGGATCCTTCCTT
GGCTAATTTTTTTCCTTTCTGGGTCCTAAGAAGCACAAGGTAAGCATCTACTGCAGTTTG
TAGGTCGCTCTGGCATGTGGTGCCACTTTACCTGTTTAGCAAGCAGCAATACTCAACTAC
ATTTTGTCGCACATTTTGTCGATCAAGCCAATGATCTCTTATCCTTTTCAGTTGTTCGAG
TCCGGAGGTGACTTGGGTGCTTAGAGAACTTCTTCTATAAAAATATGCCTCCAAAGGCTA
GTATTGGATGGTCTCCTTTTTTTTCCTTTTCAGTTGTGAAGTGCCGATGATCCTGGACAA
GGGCAACAAAATAATGTCCGTGTACTACTATCTTTGCAACAGTCTCTGTTTCACACTTCT
TGTATTTCACAGATATTGGTGGGTACTTGATTTACCGGTTGCTGGTAAAACAAATTCAAT
CCAGAGGACATGTCGGTGATGACGTTCGATCCGGTCAGTGATTCTTTTCTTGCTCATTTC
CTTGTTAGATTTATTTTCTTTCCCAGCAGCATAATCTTCTAGATTTTTCATAAAATACCC
TTGTGTCAAACAAATTCTGTAGGCGAAAACGATCATGAAGATTAATCTGTAGGTTATTGG
AAGCTTAATTGAAGAACTATATAGGTTGTCCGCTGTTGGGAATGCGAATGAGAATGGTGC
AAACGGCTGTTTATATATAAATAATGTGAATGTTAAGGAAGAACTAATTACTATATCAAT
CAGGAGGAAATCAAGGCTAAAAAATTAGAAAATGCAAGAACTTCAGTGTCACTGGAACAA
TCCACCTTGATATATCTTTTTGGTAAATCGAATGTACGAGGTTATGCTATCATTCAGAGT
CTTGAGGCATCAATTTTACAACATGTGATATTTATCACTGTTATATGTCAAGGTATCTTT
TCAGAAATAATAAGTGTTGCTTCTGGAGTTTGAAACCTAAGCGATAAGAAGGCAGCAATA
GAATTAACAAAAGTTTAACTAGGGTGAAACTATCTCATCCGTCGAGCGACCAAACTGCCT
GATTAAACTGAAACGTTTTCCCTGAAATGCTACAGGACATATTCAGTTAACTTATCCCTT
CCAGAACAGGGGACTGAGAGGTTATCCCTTCCAGCCAGAGCTTTCATACCATGGAGACTG
GGAAATATATCACCGAGCTTGTGTATTCCCATGCTCGTCTCTATTTCACCCAGGACCACA
GCAAGAAGCAATGGTGCACATTCATATGAAGATATAAATTTCACCGAGCAAATGGCATGT
TTACAAAACACCATGGCAAGCAAGGAGTAGCAATAACCAGTAACATTGCACACAGAAGGA
TACACGAGAAGGCGCAAATGATCTAACTGGCACATGAAAGAAGTCTCAACTTTCCCATGA
TCCGGGCGTGTTTCAACATTACAGTGCAGCTAATTTCATGCTTCAGTTCACCATGCATGC
CCAAGCCACTGCCTCACAAAATGCAGATTACAGAAAGAGTCGTAGCGCCAAGCGCCTTCT
CACAAGATGTTCTGCCGCTCATATCAGAGCTCTATGCCTCCATAGCAAATCAGTCATGCT
CGCTTAATGATGATGCTAAGATCAAAAAATTGATTTGATGCTGAAACGACAGTTTGATAA
GCTAAAGCTGCTACCTATCTATGGTAAGCACTGACCAGCAATTTAGTCCAGAGTAAGCAG
AGTATAGAGTGATGGAAAAGGAGTTCAGTCATCATCAGAAATGTCTATTACGTCAGGGCA
ACTGGTTGGATTTGAAGGAGCTAAACCGGGTGGATCAGCCGAGTGAGGTGGAACCACCTG
ATCAGCGGCGATGGAGCATGGAGCTGGTGGCTGTGACTGATCAACAGGGGCTTGGGTCAT
CACCTGGTCAGCAGGGGGCACATCAGCAGGAGGGATGGCAATGTCCATGCGCTGAGCCAG
TGGCTGGGACTGACCTCTAGGGGCTTGAGTCATCACCTGATCAGCGGGAGACAAAGCAGC
AATGTCCATGTTTGGAGCTGGTGGCTGTGACTGACCAACAGGGGCTTGGGTCATCACCTG
GTCAGCAGGAGGGATGGCAATGTCCATGCGCTGAGCCGGTGGCTGGGACTGACCTCTAGG
GGCTTGAGTCGTCACCTGATCAGCGGGAGAGAAAGCAGCAATGTCCATGCTTGGAGCTGG
TTGCTTGGACAGACCTCTAGGGGCATCAGTCATCATCTGATCAGCAGTAGGGACAGCAGG
CACGTCCTTGGGTGGAGCTGGTGGCTTGGACTGACCTCTAGGTGCTTCAGCCATCACCTG
ATCAGCGGGAGGGGCAGCAGCAGCAAGGTCCTTGGATGGAGTTGGTGGCTTAGACTGACC
TCTAGGGGCTTCAGTCATCACCTTATCAGTGGGCTTGACAGTACCACCATCCATGCATGG
AGCTGGTGGCTTCCACTCACCTCTAGGGTCTTCAGTCATCACCTCGTCATCGATAACAAT
GACCTCCAAGTGTTGAGATGGTGGTTTCGCTAGTTCAGATGAAACTTCACTGGCACTTCG
CTTCCTTGACCGTGAATATGTTATCTGAACTGTGCGTTGCCTCTGTCTTTTTCTTCGCAC
ACTTCTTTTGTTCACAAGTGATTCGGCCGATCCACTCGAGCATTCTGACTCATAGAAGTT
CTGCCAAAGACTAAAACAAACATACTCCTTTTTCCTAGCAGAGCTCTTAGTTTTGCTCCT
TGTCGTTTGCCTCTCCAATGCGGCACGATTTGATTGCTTCAGCTTACTCTGAGGGACAGC
AGGCTTAACACTTACTTTGGGAAAGTCTTCAGGCTTATGCTGCTTTCTTGCCTTCAATCT
GGAGCTGGTCTCGTCCGGTTGCTTGAGCGTAGTTTGAGGGGCAACATGCAGAGAAATGTG
TTTCTGACTCCCTCCATGCTCATGTTCCTTGTGTGCCATCTTTGAGGAGATATTGTCCGG
TACCTTTGCATTGCCACAATCCACATTCTTCTCCGATGCAACCAAGTCTGGCTTCAATTT
TGCGAGAGGTGCAGCAGGTAGACCACATGCTTTCTGAATGCCTTCAGGCTTATGCAGCTT
GCTTACTTTGTCTGTGGTGATACTTCCTGATGTTGCCACCCCATGTTTCTCCAATGCTAC
AAAGTCTTTCCCTAGCTTCAGTTTCTTGGGGGGCGTGGAAGGCAGGACACTGGAGTTCTC
AATGACATCCGACGTATGCAGCTTGCCTACTTTGTCTGGGGTGATAGTTTTTGATAGTTT
TGCAGCCCCACGTTTCTCGAATGTAACAAGCTTCGTTTTTTGGGGGAATGCAGTAGGCCG
CGGTACAATGGATTTCTCAACACCCTCGGAGTTGCGCCACTTGCCTGCATTCCTGGATGT
GCTGCTTCCTGGTGGTTTTGCATTGCAACCTGCATTCCTGGATGTGCTGCTTCCTGGTGG
TTTTGCATTGCAACTCCCTAGAGAAAAAGCTCCATATTTCTCCGATGCAGCCAAGTCCTG
CACTAGCTTCAATTTTTTCAAGGGTGCAGAAGACTTAACATCTTCCTGCTCTAGCTTCAA
CTTTCCCGCCTTCCTGGAGGTGTTACTTCCCGACGATTTCGCATTCTCGCAACTCCCTAG
AGATGTAACAGATGTTTGCTTCCACTTCAGTTTGCTCAGAAGGACATCCTCTGCCTTCTT
TGAGGAGCTACAACCCACTGATTTTACATTACTGCGACTCACTGTAGGTAAAAGTTCAAT
ATTGTCCCATGCAACAAACTCTTGCTTCGGCTTCAATCTTCTCCGACTCCGAGGGGCAGC
ACACAAAACAATTGTTTTCTGCATTTCATCGGAATCTGAATCTGATTGTTGTACAGCACC
TTGTGACTTGGTCATTTCAGTTGGTCCAGTCAGAAGAAGCAACTGTGTACCTGAAGAAGT
CATGTTGTAAGTTGACATGGCAACATGAATTTACCACAATAACAAGTTACCTATAGCAAG
AATTATCTTTGGTTTTGGAGTCTACATTCTTGTTGGCGAACAATAATTCACAGTAGTGTT
GGAAGTACCAAAGTTCACATAATGGAAATGATTAAACAAAACAAAAATCACTACAGCAAC
ATGTTTACGCGACCCACCAAGAGTTACTCAAGTGTACGAGTTCTGGAGTTACCATACAGT
GGACTTGATCCTTCGTTCATGAGGCAACAGGTGATCTATTTTGTTTATCAGATATCATGG
TTTTAGTTTCAATGCCACTCCTGACACAAACATCTTGCTTTTTCACTTGATTGTATAGCA
TAATTAAAAGAATATATAATAGATAAACACCTACAACATCAGCAAAGAATTTCATTATAG
TACATGGTAACTATCTTGATTGTTGAATGTATCAAACTACAGAATTAAACATAAAATGTG
GGCACAAACAGTTGTATGTTGAAAATTTAAGATACAAGAATGCAAGAAATTAGCCGTAAA
CTGAACAAATTTTAGGTGGATTACGTTGTAGTAAAACTGAAGCACGGGATCCAAGTTCGA
CCTCGATACTCTTTATGGTTAGTTCAGAGCTCATAACCAACAGTGTATTAGATACTTGAT
TCTGGCATGTACCTTTTGGAACCATCCTTTGACCTGGTGGTTTCGTTACCACATATGTAC
CACCACAACCCATCTTGTGGCTGCAGAAATAGCATCAGTTAATACACCTTTGAAGTTTTC
TCAAACACATACACCTTGGAAGTTCACCAAGCAAACATTAGTCGAAAGTAAATATTATCT
AGAAATACATTAAGAGAAGTCATGGAGAGTATTAAAGATGACAAACAAATGGCATATGCA
TATAATTATGAGTTTGAGAGCTTATTCTGCATCTAAATGATTGAGAGCAATTAACAAGAA
GAAATGCACCTGTTATGACCGGTTTACATTATAACCGGAGAAGGCCCAATTAAAGCAAGC
TGACCGAGTTATCTTATAGTATTAGGGGCTTAGCCCAGTTTATTATATTTCCTAGCCTAG
AGAGATAATATATACTCATGTAAGAGACACCGT