Contig Data
morexGenes
Links



Map Locations of contig_6400 (4175 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_6400

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73595 1 3632 bp MLOC_73595.1 Available Available LOC_Os01g41870.2, FRAME:+3, EVALUE:6e-90, 13101.m04297 protein protein kinase, putative, expressed
MLOC_73596 1 940 bp AK365496 Available Available None





CDS Structure of MLOC_73595






CDS Structure of MLOC_73596






Contig Sequence (4175 bp)

>contig_6400 4175 assembly3_WGSMorex_rbca.fasta
GGGGGGGACTGAAGCACACCTCATGTTGTTATATGTGTGACAGAATTGTCTTACAATTAG
CGTCGCTAGATTCAGTATTGACTGTCATTATAGGATGAGGCTGAAGTTTCTTCATGATGG
TATGATAGGTCGGCGATTTCGGCCTGGCCAGATGGCAACCTGACGGTGACATGGGTGTCG
AAACAAGAGTCATCGGCACATTCGGGTAACTGACCAGCCAAACTTTTTTACCATGTTTGA
TTGCTTGGTCAGGTGTTACTTATGACTTTGGAGAATCTGAACCTCTTTTACCATTATGCA
GTTATCTGGCGCCTGAATATGCGCAGAGCGGGCAAATTACCGAGAAGGCCGATGTCTACT
CATTTGGGGTTGTTCTTGTGGAACTTGTCACTGGACGCAAGGCCGTCGACATTAACAGAC
CCAAGGGCCAGCAGTTCCTGACTGAATGGGTGAGTTCACTTCATAATTACATAACTACTA
CTATCACAAATCCCTTGGGTCAAGCAGTTCCTGACTGAATCCTGTTCACCTCACAAAATT
GTCACCACTGATGGTTTTCACTAACCGAAGAATCATGTTCCAAGGAATATATATACATAT
ACTTGAAGAAAAGAGTGCTGTTTATGCCATCAGCTAAAATGAAAATGAGGGGATATTTTC
TGTACCTGTTCATTGCTCAGGCAGTGACACAATCTGAAAGCAGAGTGAATCTTGTTCTGT
TCTGACTGTAGTACCAACCCTGTTCAACTTGGTTTGCCACAGGCCCGGCCATTGCTGGAG
GAGCACGCGATCCACGAGCTCATCGACCCGCGCCTCGAGGACCGCTTCTGCGAGAACGAG
GTCTACTGCATGCTCCATGCAGCAAACCTCTGCATAAGGCGCGACCCGCATTCGAGGCCG
CGAATGTCCCATGTCAGTCGAATTCCCACACAAACATTTCACTCCCTGAGCCTGAAGCTC
TCAGTATGATCAGTCATGATGCAATCTTAGGTGCTTACCCTTCTTCTTCCTGAATGTCCT
GCCTGTGTTACCAGGTTCTCCGCATCCTGGAGGGCGACATGGTGGTGGAGTCCGGTGGCT
GCATTTCCGCCCCGAGCAGCGATGCCGGGAGCATGAGCCGCCGCATGCTCAGCGACCGGC
TGCATTACCAGGAGCAGGGCAGCCCGATCCGGCCCGATTCGCAGCAGCGTGTCGGCGGCG
GGGTGAACCGCTCCCTTGAGACCACCCTGAGGAGCGCCTGGGATGCTGATGTGCAGGGCC
TGTCTAACAGGTTCTGGTACCCTTCAGCAGCTGCAGACAGCAGCAGCCAACAGCCAAGAT
GATGAAATGTGACCCAGCTCTTTGCATCTGTGTGACTGGTACTCTGTTTATAGCACTGGA
ATAGATGGTATAGCATAGCAATAGGGGTTTACATTATGATGATGAGCCATTGTTTAGCTC
TTGTTTGTGAGCATGAACTGATACAAGTGTGGTGACATACAAGCAGTTGTTTCACAGTTT
CACTGCTTGAGAAACTGAGGCCATTTGTGTGCTGTGTTTTGCCTGTATTTTCCAGGCTTA
GTTCAGCCTATGCTCAAGCACACATCAGGTGCATTTGCCAATTGCCATGGCAGAATGATT
CTCCATAGATAACATGCAGAGTGAACACACAAAGCATAAGAAAGAAGATGACTCGATTCT
CAGATGAGCAAAATCACTGAACCAAGCACACAGGAGACACATGACAGCAGTAAGTGCACC
AGGAAAACATCTCATAGCATTGTCCTATCGAAATAAACGGAATGAACTGCGGCTAGAACA
CGACACGGGTGGCGACAGGTGGGTGGGTGCACCTCCGGTGTACACGGGATACACAGACGG
CGCGAAGACACGGCGACAGATAAAAAGACAGACGGGCGGAACGACAACACACTACTGAGT
ACCAACAACTCAACAAGGACACAGTCTGGAGTGAACGGAGGAGCCGCTGCTAGTCGGATC
AGGGCACGGGACACGGACCCCTTCACTTCCCACCTAGCGTCGGAAACTGGGACTGGTCTT
CGATCGCCGGAGCAGCAGCTGGTCGCCTGCCACCGCCTCCGCCGTTGTACCCGCCACGGG
GCTCGCCACGTCCCCTGAAGCCACGGCCGCGGCCCCGACCACCATTATACCTCTCGCCTT
CAGCCGGCTTCAGGAATTCGTTGATGTTGAGGGACTTCAGAGGAAGGGACAGGAAGCATC
ACAGGACACATAGCATAACGGTTAGAAGCAGATACAACAGTTGCTTGGACCAAAGTAACA
GGACAAGACAGAAATGCGCAGGATACCTTCTTGGCACGCTCCTCTCTTTCTGCATTGTCT
TTCTTCTTCTCCTTGTCGGAGCCCTACACATCAGGAGGGTTGGTGAAAGTTAGCGTTGAT
ATAACCACACGCAGAAGAAACACAGCCAGATGAACAACTTACCAGCTTGATAAATACTTC
CTCAGCATCCTTCTTCACTGACAGTTGCTGCATGGACTGCAGCTCCTTGTCAACTTCAAC
TTTTCTCTCCTCAGCCTTCAGTGCGAGAATCGCTTTCCGCTTCTCCTCTAATACTTTCTC
ATATTCCTCCAAGGTCATCTCCTGTATGGTCAGCGTACAAGTTATTTCAATGACAGATGT
AGCATGCCACAGGACAAATATCAGACATCAGAAAGATCGCAAGCATGCCACGGGCAACCT
ATTCAAACTTGTAATGAGATACCTGGAACATGTACATACAACAAATGCAACAGCAGGCAT
GTACATACAACAGTTCAGAAGCACCAGAATGTTCAAGGGAAATTGAATATGCCACAATAG
GCCACCCCATGGGGTGGGTGAAGAGGTAATGCCACTGTAACTGAAAACACCTTCATCATA
ATACAAACAAACCCAGGATTATATAAAAAAAGTCTGCACCCCAAGCAAGGGGGAAAATAG
CACTCTAGCAGCTTAATTAATTACCAGGAAGTCGAGAACTCTAGGATAAGCTATTGCCAA
AATAAATTAAACAAGAGTACAATACATCAAAGAGTGGATGCTGTTATACAAACCAACTAT
TGGCTAGGTAAAACTGAGCACTGGCATTTGGCAGTATATTTCTGAGAATATCAGTCTCAC
CGGCTCATACTTAGTTACTCCCTAGGAAAAAACAGGTATCCTTCGAAGTGAATGACGATT
AAAGAAATTGATATTTCAGTACATGTATATATGCATCCCGCCTACCAATTATCTACTCCC
TCTGTGCCATAATATTTGTTGTTGGAGAGAACTAATCCAGTTCTCCCCAACAAGTATTTA
GGAACAGAGGGAGTAGATGCCAGCAGCAAACCAAATGGCTCATTGAGGTCATTTGGCAGT
TGACATGAATGTTATGCTACACTAAAATGTATGTGATAAAATGTGACAAAAAACAAAGCA
ATACATTCTGACAGAAGTATGGAGCATTGAGCACAAACGAGAACAGAACTGCAACAGCTG
ACGATCAGATTAGCTTGGAACATGAGGACAATAGCAGCTTCCAAAGATCTTAATTCAAAC
CATTTTTGTACGTTGACAGAAGTAGCTATTACGCAAGCAGGTGTGCAGCAAACATCTAGG
CTGGTTGAGTAACGGTATTACGATTACATCACTAGAATTCGATATATGAAACATGATACC
TGATATGTCCAGTCCAACAAGACAGTTACCATCATCCTTGTCATCAATACAAAATGTACA
CGCCATACGACTACCACAACACAATTTAAAGCAATCAGATGATTGCAAACTCTGAAAAAT
ATACCTTATCTTCCTCAGCTTCCTTCTCTTCCTCTGCATTCTCTGCACCCTCCTTGACCT
TCTCAGCCTCAGGCAGCGGCGCATCCTCGGGCGTCTTCGCATCCTCTGCCACAGCAGGGG
TCTCCTCAGTGTTGACAGCCTCCACATTTTCCCTGACAATCATCAATCAATCACATAAAA
CGCGTCAGGCTCCACACAGCACAACAGCAAACAGAATCAGCATCATGCCATGAAACCAGA
TATAAATTAGATCAATCTTAACTGCGGGAACCCTTCATCGGTGGCAGTCCCCCAGTTGCC
ACGGCCAGCGCCGTCGCGCTTCATCCCGAAGCCGCGGCCGGTGCCGCTGCGGCGCTCGTA
GGACCGGTGCGGGCGCCCGAACTCGTCAGTGTTCT