morexGenes - Barley RNA-seq Database

Contig contig_63919

Source Contig contig_63919

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_63919 (4093 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_63919

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73560	1	358 bp	AK355585	Not available	Available	None
MLOC_73559	1	602 bp	AK355585	Available	Available	None
MLOC_73558	1	1283 bp	MLOC_73558.1	Available	Available	LOC_Os02g44520.1, FRAME:-2, EVALUE:4e-21, 13102.m04971 protein OsSub19 - Putative Subtilisin homologue, expressed

CDS Structure of MLOC_73560

CDS Structure of MLOC_73559

CDS Structure of MLOC_73558

Contig Sequence (4093 bp)

>contig_63919 4093 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCAAAAAAAAACATTTTCACCTAGCTCCGGCACTGTCGCAGGAGTATTT
ATCTTTTTTCAAAAGAAATTGGTTGTGCTAGCAACAAGAGGTGTTATGCCATGTGCTGCA
ACATGGCAACATCTAAGCCCATTTTAAGTTAGGATCATGCAAACCGGGTAAGTGCTGCCG
CAACAGTCCGAACCATACAACAAGCAAGTGAAGTCGCGCCCAATAAGCTGCAAATAGGAT
TATAGAAACAGCAGATCACCTCCCATATAAGTCAATTAACCATTTCATTAATCTCCCACA
TCCTACAAGCATTACATACGTGCGCTTAAACTGCAGTTGACGGCATGCCATATGAGAACT
CAGACGCGGTTTAACCTCTGTCGGATCAAAGTATCGTCTAGGGATCCGGCTGAACTGCCA
ATTTAGACCGCATCGACGAAATCCATTCTCCAGCCCAGAAGCTGAGGTCAACTACAGTCA
ACCCTCAGAGCAAACGATGGCACGTAGTACCGACTGGCCGGAGCAGGGAGCAGGGAGCAG
TGAACCGGGGGCAACCGGGAGGAACTCACCGAAGATGGCGATGAGCGAGCCGCGGCCGTC
GTACTCGGGGTGCGCGGCGAGGAAGCGGTCAACGCCGGTCTCCTTCTTCGGCATCAGGGA
CTCGAGGAAGGAGGGCTCGGTGAGGCGGAACCCGCTGGCGGCGGCGGCGGTCGTCTCCTC
GGCGGGCGGCGTCGTCGTCGTCGGCGCGGAGGAGGAAGACGGCATCGCGGTGGGCGCGAC
GCCTCGGGTCGGGCCGGCCGCGGCGGAGGGGCGGGCGTGGGCGTGGAGCGGTGGGGCGGG
GGTGGAGGAACAGGCGGAGACTCTGAGGAGGGGCCGCAGCTGGGCGACGGGTTTATGTAG
CGCGGCTGCGGCTCCTGCGGTAGCGCAGCTCCCGTGCCACATTGGGTGGCTTCTCCTTTA
CACTTTTCCAAGTGATTTCGGGGTTTGTTTATTTTTGAATGGATTCCGAATGTTCAGCTC
GGTTGCGGAATCTGCGTGGAAAGCATGGCTGATGATGATGATGATGATGATNNNNATGAT
GATGATGATGATGATGGGGGGCAATGAATGAGTGAAATTGAAAATGGCGGAACTGCTGTG
CCAGAGCTGAGCGGCAATGGAGACTGTGCCAAGCGCCCGCTGGGAGGTGGGCGTAGGCTG
GCAGCCGGTGGTTGGCTAGGGGCAGCCTAGCTGGTGCTGAATAGATAATTTGGCTGCCTT
TGATGATACATGGATCATCCAAAAAGAGATGTGGGAGATATTTGTGGCCTTGGAAGGATG
GTTTATCCGTGATAGAGTACTGAACATTACGGTGTTTGGAATTTTTTATCTCTTCTTCCT
CCTCAAATATGCCATCGCCATCTTCCTCCTCAAATATGCCATCGCCATATGTACATAGTT
TACGCGCAAAGTGTAGACGTGCGTTTTTTTTTTTCAAGTTCTCATAGGCTTCGCTGGCAG
CAAAGCCGCGCCGGAAAACAAGCTACAGGAAAGTTTCCAATGAGCACACCATCGGTCAGA
GCCACGAACAACAGGCATGCATCACATTCCAAACTTGTTCCTCAGGAACATGAATCTCAC
AACAACAATAAAGACACAGATAGAGGAGATATCTCTGCAACAGAAGTAATGCATTCCACC
AAATCCATTACATGTCATATATACTACGAGACGGGCAATACGAGATTGGAATGCGCAAGG
TATCGGAGGCTGCTGAGCACGCATAACATAGCCAGTTCCGAGCACGACCCTTATTACAAC
ATTATTGAAGCTTCAGGTGTACCGATGCGTCGAGTTGATCCAGCATAAAGATTTAAGAAC
TCGCGAGCAACTTCTTGATGTCCTTCTGCAAAAGACACAAGGAGTGAGCGCTACACAATC
ACAAAAGGAGGCTTGATCAAATGGAGCACGTATTGCACTGTCGGGACTTACCTCGATGCT
GAGGGGGGAGGTGGTCGGCGCGTAGCGATCCACAACATTCCCATCCTTGTCAACCAAGAA
CTTGGAGAAGTTCCATTTGATGTTGTCCCCGAAGAGACTGCCTTTGCTTGACTTCAGAAA
CTTGTAGACAGGTGCAACATTGTCACCATTGACATCAACCTGACAGATAACAGATAATGG
AAGTTAAGTTAGTACACCTAGCTGCTTGCCTCTCTGGTAGATAACTGTAGTATGTGAAGA
AAATCAAGCGACAAAACTAGTTGCTATTTTCAGAAAGAAAGGAAAGTCAGTTGCTACAAC
TAAAGTACGACCATCTGATAACTAACAGCCATTTCAGAGTTCATATCACAGAGACTGCAT
ACAAATTAGAGAACTCATGTTGGACTAGGTTTCCTCAATCAAATGATACTGACTAGTCAT
GGACGCAAGTCATCCTGTACACTGTACACTAAATCAATTGTTTCTTTCAGCTCGAAACAG
AAACACAAAAGAGAAAAGGAAGGAAGGAAGAAATATTAAGTACACATTTACCTTGTCAAA
AATTGGATACTCGGCCTTGAAGCGAGTGCAAGCAAACTGAACAATTTCCTCATTAGTGCC
AGGTTCCTGCCCACCAAACTGGTTGCATGGGAAAGCAAGGATCTCAAAACCTGTTGGTCA
AATCAAATTGTTAGCATAATACTTCCTCCGTTCCTAAATNTAAGTCTTTTAAGCGATTTC
ACTATATGTCTACATACGGAGCAAAATGANNNNNNNNNNNNNNNNNNNNNNNTCTATATA
CATCCGTATGTAGCCCACTAGTGAAATCTCTACAAAGACTNNNNNTTAGGAACGGAGGGA
GTAGATCATAACTGAAAATCAAGGACTAATCCATGTGCAGATAGATCATACCCTGGTCCT
TGTACTTCTCATACAACTGAGCGAGTTCCGTATAGTTGGAATTGGTCAATCCACTGCAGT
AGTTATAGGCAACGATTATCTTTGTTAGTTTAACAAAATGGTCATCCTTTCAGTACTTAC
ATCTCTCCACACGTGGCCAATTAAATAAAACTGGAACATGAGTCAGAGTAAATGTCATGA
CACTTAATGTGCACAAAGATAATCAGGTTGTCCAACTCCAAACTAACTTGATCAGAGTAA
TTTTCTCCATGTATAGACAACTCTGATGCAAATCGCAAATGCTGATCCTAATAAACCATA
AACCAGTGCGATGACTGGATATTTAGCAGAACCATATTTTAAACTTTGAGCTATATGATA
CACACGGTATACTCAACTTTATGAATGGCAAATGAAACTTTACAGTTTAAAATGCACACC
AAGAATACATATATCGTTTATTTTCATTCTCTAGCCTCATAATAATAATAATAATTAATG
TAAAGCCAGATTTTCATTACTAGTACAATAAATGAGAGGGACTAGACGAAATGAGCATAA
CATTAACCTTAAAGTCTTAAGAAGCACTCTAGGTAATACCAATACACCACAACATGAATA
AGAGAATCACACGACCATTTCTAAATAATCTCAACATAAAAGATGAAGAGCAGATATGAA
GGAGCAGTAATAATAGTTCATTTCATACCACTGGGATGCAACATTGACAATGAGGAGAAC
CTTCCCCTTGTAGGTGCTCAGATCGACATCTTTTCCACTTGCATCCTGCAGGGCACAAAA
TGAAGAAACTTAGATGCAGACATCCGTGCATGAAGAAACTTCAACTGGAGAACATTGGTA
ACGAACAATTGCAAACACAAGAGTGAAATGACAGCAGGGTCAATGGTAGGCACATGTCCA
GGCGCAGTTGCAAACACGGGGAATTCGCAGGGGCTTGGATGCGAAATCCGAAATCCGGAT
CGAAATAAGGATAAGGGGCAGGCGTGACATGAGGCCGGCGAACCTTGACGGTGAAGTCGT
GGACGGAGGAGGCGGAGGAGGCGGCGGCGGCCATGTTGCTGGACAGCGAGAATCGGGCGC
CGACCGGGCGGAGCAGCGGCGAGGCAGCGGCGGCGAAGGCGGGGGCGCGGATCGGCGGCT
GCGAGGACGGGGCGGCGAGGCGGGGGGGGGGGGCGCGGCGGCGGGGGGGGGGGGGGGGCG
ACGAGGCCGCTGG