Map Locations of contig_6369 (8371 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_6369

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73455 2 2181 bp MLOC_73455.1 Available Available LOC_Os07g29360.1, FRAME:-1, EVALUE:9e-171, 13107.m02945 protein tetratricopeptide repeat domain containing protein, expressed
MLOC_73456 2 561 bp AK248246.1 Not available Available None





CDS Structure of MLOC_73455






CDS Structure of MLOC_73456






Contig Sequence (8371 bp)

>contig_6369 8371 assembly3_WGSMorex_rbca.fasta
GGGGAGGGGGGAGGGGGAGAGAGAGTACCATTTTAACTGCTTGTTGAAAAAGGCCCTGAG
CAAAATATATATGGGCCAAATTGATCCATACATCAGGTACCTGAACAAATATACTTCCTG
ATGCAGCTTCATGTACCTAATATCAAATTGGTGATGGGCGTTATTAAAGTTCACAGTTGT
CATATAGAGTAATGAATACTGTTTTCCCTTCCTAACCTGTGTAAATAATTCCTTGGAAAT
ATCCCATTGGGCTTTCTCAGCATGTAAGATTCCAAGACCATTTGCAGCAAACATATTACC
ATGGTTCTGCTTTAGTACCTGAATCAGAGATTGAGATCCCAACAGTGAGCAAACCGGCAC
TTAAAGAGACCATACCATCATCAGTTCCTCAAAGGAAGCACTGCAGTACATAATTTGCTT
TCAACCACACATTTGCTTTGTGGTTCCAAGAAATCAATGCTCTGATGTAAAAGTAATCCA
ATCAAAGTACATACAATTCAGTTGACTGTTTATCTACAATTCTTCGGAAAAGAAAAATGT
ATCGTCATTCACCACATCTTGCTGGATGGCTTGCTCAGGTACTGTGGAACTCAAATTAAA
AATGTACCAACCAACTTCCTAAGTTTCCAACTTGACTTATTAAATATCATGCCATTATAT
TTCTGTAGAAATACAACTGAGATTTGAGGCAAACATGACGAAAGTGTTCCATTGCAAATC
AATAAAGAGCTTGCTAGATGATCTGATGACCTACTACAAGTATCACTCCCGCACTACAAA
TTATGGCATTCAAATTCCTAAGCTTTTGACTTTACATAGTAAATATCACGACTTGATCAT
ATACAAAGTGTTCCATTCCACACAGAGAGTTGTTTACTCTTTAGAACAAATATGATTGCC
CAATTCAGTGATTTAATCTCCAAAATAGACAGGAGTTAAAACTAAACAATTGTTTTACTA
GAAAACTAACAGAAATTAAAAACTAAGCATTTGCTACAATTTCAAAAGGATGGCATTAAT
GAAATAAAAACATGAGAAATCGTGCCGGAAATATAACATAGACGTGGTTACTAAAGTTTC
AAATGGATCAAATGTAGCGTTTGATTCTTGTGCAGAGGATCACAGAACATTTTGCCTGCT
TCTAAGTCTTTGTTAGCCTAAAATACTACTCCCTCTGTCCCAAAATAAGTGTCTCAGCTT
TGTACTAGTTCTATTATAAAGTTACACTAAGCTTAAGACAGTTATTTTGGGACGGAGGGA
GTACTAAACAAAGAAACAAACAAAAAGCTTATCAACAGCAGAAAGCACAAGCTGACATCA
GGCCCAAGAATAGTCGGTTCTATCTTAAACAATAAGCAATGATAGCAGATGAACTTCAGG
GTAAAGTACAGAAGATGTTCCTGATAGCTCCAATCAAGACAAGCCATTCTGAGCATCAAC
ACAAATGGTGAATATAAACGAACATATATAATACATGCCTACGCACAATTAGCGAAACAA
AAGGCACCTGCTGAAGAACAGTTTGTGGGGTGTATTTTTGTAGCAAATATGAAAACAGAA
TCTATCGCATGAGAACCTCCAAAGACTTGATGAATTTGAGAGGATAACTGGGCATAATAG
CAAGTGTAACATATCATACATTCAAAAATATTTCCTTTGCTTTCTCCCGATGAGTAGCCT
CGAATTTTGGGGCCTTTTTCTCAGGGCGATTGGCAGCAAAATAGTTCCAGTTGCCCTGTA
ACAGCACATATACAATTGATCAGTCGGAGAAAGATGAAGTAACATAGTCATTTACAGTGA
AAATTCTGTATTACAATGACCACTATTGTAGAACTGTTGGAAATTACAAGGAGACGAGTT
ATATATGTAACAAACATATTACTTAAGTTGGTGATACACTACTGGTCTAAAATACTTGAC
ATATTTTATCCTGCCAGCAGGGAGAACCAATTCATAAAAGGAAAATATGATGCACTGTCA
TGACAAGCTTTATTAATTCAACAGTAATTGTGAACTGTAAACAAATAATAACTCAGGATG
GAAGGGATTTTACTTATTAAATTCTACCACGGCCATCCAAAAGTCTACTACATGTAGTAG
GCTCACATACCAGCTGAAGCCAAGAGTATGGGTCTTTTCCCTCAGTAGCATCCTTAGCAT
CACGGAAATGTTCCTTCGCAGTGAGCCAGGTTTCATCACTCTGGAGTTCAAGACTTCCAA
GCATAGACAGTGCATTTGGATACTTGCTATTTATCTTTAGAGCATCACCTATCTAGAAAC
AAATAAACCATTATTATTCTCAGTTAAGAAGAACAACAAATGTAAGCATCACTTACCAGC
TCAATGCTCAGTTGAATATTGTTTTTTTCTTTTGCAATAGACGCTAGCCTCAGATAGGCA
TCAATATAGTCCGGGTACTGTTATAATTATTTCAAAAACAGGGAGTTAGAATATAATACA
AGTGTACTACAAATACAAAAGATTGTCTTCATTGTTGCACAGAAAATCCCGCATCACAGA
ATAATGCTACAGAGATCTATTTTAGAAATCTATTAGGAAACCAATGCCCAATACAGCAAC
TCCAAAATAAATCACCAATAGGGTCTGTACTTGTGATAGTTATTTGGGGACCAACTTCTA
TCGAAAACATAATCACCTCAATATGCATGATTTGATCTCAATTGCCAAAAGCTTTTTTTT
TCATACAGACTTATCTATTTTTCCTCGAGCACACACCTGACTGTGTGTCATTTTGTCTTA
GAAGAAGAAAGCATCGATATGACGTGACGTGAACTACAGATCTTTTTAAACAAAATTGCG
CAAGACAGCTTGTGAACATGAACTTTTCCTAGACGATGTAAGCAACATCAAACAAAAAAT
GTCCGTAAGGCCCTTCGACTAGCTTTGGCACTAACCAGTGTCTAGTTAATTCTGAGAACA
GTAAGCGCAAACAGAAACAAGAATATATAGTATTAACTGATAAAAGAATGGGAACTACAA
AAAAATATTTACTGACTGAGGAATATATGCATAATATCCTGGCACAAAAGATTGATTATC
ATCAAATGAGCTTTCAATCACTGGCAAAATATGTAAACAATACATCCGTGGTGGATGGGG
TAAACATGACAATGGTATCTCTACTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAG
TTTTCAATAGAAAACTACATACGGATGTATATAGACATACATTAGAATATAGATTCACTC
ATTTTATTCCGTATGTAGTCCCCTAGTCAAATCTCTAAAAAGATTTATATTTAGGAACGG
AGGGAGTACATCGAGAGAAGACCATTACAAATGAAACTAAAGGTAATGAACTGCAAGTTT
TAGAGAAGCTGCAAAAACAAAGTCAAACATGAAAGTGTGTCCGCAGGCAGATGACTCTAA
GCATCAGAAAATGACAGACAATTGTGTGCTGATTGCAGCTGCAATAAACATCAGGAACAC
AAAGTAAGAAAAGGTGAAGGTTACAGTTTCACTGTTTTCATGTTCTTGCAAAGCATGCTT
CATCCCTGGTTACATTTATACTGTAAGATAAGTAAATGAGAGACAGAGAGAGCGGACTCT
CAGGAAGGGTTTTGGGGATGGCACCATGACAGTACCTTGAAAATAATGAGACGGTAAAGG
TGGCTGGCTTTCACAGTATCATGAAGCTCTTCCAATAATCTTGCATAGTTAAACAATGTG
GTGACTTTATCGCAGGGTAATTCAAGAGGTATGTTTTCTTCAAGTTGGTGAAACAAACTC
TGATCCCTGTATTGCACACTCCAGTTTACCATGGAACTACCAGCAGTCCCATCCATAATT
GAAACCCAGATACCGTCCCCTAGAGCTTCCTTAAAACTTTGCTCAGCCAACTGAAAGCAT
GAACAAAAGAGGTACTGTCAGGCATACATGAAAATGTAATACAATGTTATATGTATAACA
GTAAACAGACCTCGAACTCTGCCTTCTCAAAATAAAGAAGTCCAATTCCATTGAGCAATT
CAACTGGTACTTTCTCTCCTGCCTTCCTTAGGAGAATACATGCCTGAGAAATGCCAGATA
ATATTATGTATTATAAAGAGAACATCCACCTTACTCCCCTGAAGTATCAAACTTTGTCCA
TTTAATAATTAATAGTATTGATCCTCTAAGCTTCCTATTGATCGACTTAACAACCTCATG
TTTCAGTACCGATTATGTTACCAGTCAAACCTGATGTGCCTGCGAAATGCTAGATAAGAT
TACAACTTATAAGAAGTAGATTAGGAGCTCCCTTGAAGTATCGAATGGTGTCCATTTAAT
CTTCTTTAATCCGCCAAACTTTCTATTGATCGACTCGACAAACCCATTTTTCAGTACTAG
TTCAATAACCAATCCAACCTGGTTTTGCTTAGCCGGATTGATAGCGTGGACGGTGGTATT
GCCACATTGGCTGGCATAACACCTGGTTCAACCACTTTTAAGCACAAAATAGATACTGAC
ATCATCAAATCTCCACATCCTCTTCCTACCCCGTCTCCACCCGAGCCACGTAAAAGGAAG
ACAGAGGGAGGATATGTAGAATATGATAGCAGCATCCATTTGTGGTGGACGGTGGCAAAA
CCAAGATATGCCAGATGAGGTGGCACAGTATTAGGAGTTCAAGGGATTATGTGAGCCCAA
AAGGAGTTTAGGAAGCTAAGCAGACAAACCCAATGCTTCTGGGGAGTAAAATATGTTTTC
CTTTTAATAATAAAAGAAAAATACACATGCATTTGATCAACAAAGTAGTTAACATGGAGC
AACAAACATAATGCAGCAAACATTTGCCACACCAATAAGATGATCATAGCCAGAATGTCT
GCCTTAGCTAACCTAGCATCGCCAACTTGTGCAACTGATGCATGATCTGCCATGCCAATA
TGCAAATCATGGTCAAATAATCCACTTTAGATAACCTATAATCACCAACCCAAACAACCA
AGTACATGGTTTTTCATGCTGCAAACCAATTTCAAAGTTTGAAGAGCATGTGCCAATTCT
GCCAAAATTGACACTAGAGAGTAGGTGGTGCAGCACAATAGAACAACTCAACTTTTAGGA
GAAAGCCGGTTTCAACTCCACAGCCAATACACTGGTAATGTAGCATTGTAGCGGAAGAAG
AACCTAAGCTGATAGAGTGATGAAGCCTATAATTAAATGAATCCACATTCTGTAGTGTTA
ACGTTTGTTTTTTATATTAATCATACATTTGTGGATCATATATTCCAAGAAACAAAGTTC
AGTGAATAATCCTAATTCGGAAACATGTACACAAGTTTGATAGAAGGGGGGAAACAGCAT
TTGGCGCTGGTCAACAGAATAAACATACACTCCCTCTGTTCCTAAATATAAGTATTTTTA
GAGATTTCAATACGGACTACATACAGATGTATACAGACATATTTTAGAGTGTAGATTCAT
CCATTTTGCTCCGTATGTAGTTCATATTGAAATCTTTAAAAGGACTTATATTTAGAAACG
GAGGAAGTAGCTAGTTAAAGAGCCTTACTGTCTTTAAGTATTCCATGGCAGCAGCCCAAT
CAGATTCTACCAACAATTCACCAAGTTCAACAAATGCCTGCATAGTGAATTAATCAACAA
GATTGTATGCAAAAACAAGCATTGGGACTACAACATCAGATATATGACCAGACCATGTGT
TGAATAATGGAACAGAGGTAGTACAGGAAGATGGGGTTCTTAAATAATCCTCCAAACTTC
ACATAAGTACATGATCAAATATCAAAAAGGAGCAGAAGTTTAGATCACTTGACTCCAGTT
AACCTTTTACGTGATGCTTTAGGTTGTGTTTATTTGGGCTTCGTAGGGCCTTTGGCTTTT
CCAAAGCACCTGCTTTGCAAGGCAACGAGAGATAGCACCTCCCCCGGGGGGTGCTTGCTT
CCCGAGCTTCTTCACTTAAAAACGAAGCGGCATATGTCTTTGCCACTAATATTTGGCTTG
AATACAGCACAGATGCCACTGAGCCCCCTGCCTCTCCATCTTTCTCTGTTGTTGCATTAA
CCGAGCGTGGACACAGAAAGAACACGAAAAGCTAGGAACCCTCGTCCCACCGCCGCGCGG
CCAAGCTCCTCCCTGTTTATTTATTTATTGCTATAGTGTGCATCGCTGGCTGCAGCTATG
TTATGTATATGATCGCTGGGTGCTGCTATTTATCTGCTGCTGATCCTGTGATGCATGTTT
TGTTGTCGTAATAAACCGAAGAACAAGAATTTGTGTTAGATGTTGCTCTTGTGATGCATT
ATGGGGGTGTTTGGTTGGGCTGTGGGAAACCAGCTTATGGATGTGGGCTGTCTGTTGTGG
AGAAGCAGCTGTGGACTGTCTGTTGTGGGAGCATTGTAGGTCGTCTGGCGAGCTGGTTGT
TAGACTGAGCTAATTGAGGCATTTGTTTGAATATTGTAGCGTGATGGTATAAGCTAAAAG
CACATAAATAAGTGGTTGGTTCGGCTTTTGGCTTATCGATACCACACGACACTTGTACAT
TGATATTGTGATGTGCGACCATTAGTAGCTGTGATGTTAAATTTGTTGAGTACATCGGTT
CTGTTCTTGTCTGGCAAGTACAACAGAGATCTCAAGTGAATATCAAGAGAGGGTTTTGTT
TGTGATGGCCATAACCAGAAACTCAGCATGAGCATGCATCTGTTTCATGCGATACATTGG
AATCTGAGTGCATGAAGACGCATGACTTTCTTGCAAACAAGCACTAGACAGAAAGAGACA
TTTATTTTTGCTTAATATCCTAACACACTGCAAATAACTTCTCCACACGAACCACGCCTT
TTACTTCTCGACAAGGGAAGAAAGACGAACAATATCTACAAATTTGCATGACCTGATAAT
AACTGCTGCTATAAATTCCATATTTCATCTAATCATCGAACAACAGGACATCTTTAGAGG
AATTATTAGTTAGGACAAGTAGAGTGTGCTTTTTGTGAATCAAATTCAAACTGAAAATTT
TCCTTTAGCCTACGAGCTGCAATAAAGGTGTGCCCGTGTCATCTATAATTTAATTTAGCA
TGCCCAACTATTAATGAAGTTTCCTAGGTCCAGACATTCTAGTTCACATATACATCCAAG
ATTGGCATTCCTGATTCTTAATCATCAATATCGCAACATCCAAGTGAATACAAATTCAGT
TAGTGTAGTGTTTTTGTGGTATGAACAGGCAACAATGATACAATTGTACAAAATCGATGA
ATTGGTGGTTTAAAAATTATTCACTAGAAAGGAGAAAGAGACGAATGACTACCTGGTGAT
CTTTTGGATCAATCCGTGTAACTTTCTTAAAGGTCTCTATGGCTTTGTCATTCTCACCCA
AATTTGAATAGATGTTCCCAATAGCCTAGCACAAGCAACATAAATCATTTCATTCATAAT
CAAATGGAATGCATTGGAACGATGAACGGAAGCATTTGATTAGAAACACATCTCACCTTC
AAACTTTCACAATTTTCAGGGTGTACCTCCAGCACTTTCTCAAAGCTAGCTAAGGAACGT
TTGAAGTCACCAAATTTTAATTGTATTTGACCAAGGCCTGGTTCAGATCACGAGTGTCAC
AAAACAGCAACAAAGTACACAATAAAATATTCTAAAATAAAAAATAAGCATTTGGGGAAT
CAACCAAAAGTTCAAATAAGCACTTGAGCAATTATACTACCGAGGTATTAGACCCTATTG
GGGTCAGATGAGGGTGAGTTCCCTATCCCAGTTATCAGAGCCTTACCCTACCCGAGTTAC
AGTATTGTATCAAGGTTCCCAACAGAAATAGTTAGGGCACAGGAAACAAAGCATGTAGTT
TATCAGTTGATGCTGGACGCACACCTATGCACTGATAAGATAACTGACAACAATAGAGGG
ACAAACCACGCAAGCAGCAACCAAACTTTTTAAGCTAAATATCTATGTGGTATAGTTTTT
ATGGCATAATGCATTGTATAGATACGACCTAACTTAAGATAACAGCAAATTAAATCACAA
CACTAACTTAGTATGGCAGCATGCCAGCATATAATAACTTACAGCCACTAGCAGATTAAA
CCAAAGAACAGAATCTAACCTAGTACCTCTGTTTATAAAGCGTCCTGCTTCAGACGATTA
AGCGTCAAGGCGCCCTAGCAGCACTTTAGATATTTGCCCGCTTTAGGCGCTTAGGTGTCG
CTTAAGCATTAGAGCGGGTGGTGCTCGCTTTACCGCTTTGTAAACCATGCCTAGTACATA
GTATAACATCTTTCAAGCACACAGAAAAGAACTGCATAAAATGAAAGAGAAAAGATGATG
CAAAGCCCTCCCCCCTCTCACTCCCTCCCTC