| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_63412
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_73531 |
4 |
3543 bp |
MLOC_73531.2 |
Available |
Available |
LOC_Os05g35540.1, FRAME:+3, EVALUE:0.0, 13105.m03724 protein GTPase of unknown function domain containing protein, putative, expressed |
| MLOC_73440 |
3 |
2432 bp |
MLOC_73440.3 |
Available |
Available |
LOC_Os05g51710.1, FRAME:+1, EVALUE:4e-131, 13105.m05590 protein pleckstrin homology domain-containing protein-related taxo, putative, expressed |
| MLOC_73333 |
1 |
3072 bp |
MLOC_73333.1 |
Available |
Available |
LOC_Os01g48000.1, FRAME:+2, EVALUE:0.0, 13101.m04969 protein S-locus-like receptor protein kinase, putative, expressed |
| MLOC_73389 |
4 |
1632 bp |
None |
Available |
Available |
None |
| MLOC_73536 |
3 |
1492 bp |
MLOC_73536.2 |
Available |
Available |
LOC_Os01g52970.1, FRAME:-2, EVALUE:6e-162, 13101.m05549 protein OsFBX22 - F-box domain containing protein, expressed |
CDS Structure of MLOC_73531
CDS Structure of MLOC_73440
CDS Structure of MLOC_73333
CDS Structure of MLOC_73389
CDS Structure of MLOC_73536
Contig Sequence (7879 bp)
>contig_63412 7879 assembly3_WGSMorex_rbca.fasta
GCCCGTGGGCTTTTGCCCGGCGCGGCCCCCCGACGGGGGGAGGGTGGGGGGGTGAGAGGG
CGGGTCGGGGACGTGGCGGCCCTAGGGTCCCCCCCCCCCTCGCCGTGCGGGGGCGACGCG
GGAGGGGTCGAGGGGCTCATATATTTGGCAGCACAATCTACCCACGTATGGACTGTTAAC
ACGCGCGTGTGCTCAGCCCGGCGGCTGGCGATCTATTAGCGTATCCAGCCCGGCGGCTGG
CGGCCGGCGACCGACGACGAGAGGAGCAAGTTCCTGTGGTACTTGGTACGTCGCTCAATA
CGCTCACGTCCTTATGGTCCGTTGATAAGTGATAACCATCAAACAGAGGAAACCATGCGC
CTCAGCTTCATATGAGCAGATGGGCACGTAACATGTGCCATTGCCATTTGCCAGTTAAAC
ATTAAAAAAAAAACTAAAAACGAAAATTCAAAAAATATAAAAAAAACGCCGGTGCTTATT
ATCCTCCGTGCGCGTCGGTGGAATCGGGCAAGTGTGCGAGATGACTTGCGGCTCACACGC
GTTGAGCCTTTTGCAGTCACAGCGCACAGCTAGCTAGCCCGTGTTTTTCATCGTAGTTTT
CATTTTTAGTGAGATTTTGATGACATTTATTGAATTTCATTAATTTCGGCAGTGACTGAA
ATATTTACCTTTCGGCAGAATATTTCAGCAATTTCAGTAGTACACATGAATTCGAATATA
TTTTTTTAATATTTTCAGAAAACTCAAATATTTAATTTACTTCAAGTGAATATGTTGGCC
TTCTCAAACCGAAATTGTTGAATTTCGGTGATTTCGGTTGGTGCTGATTTTCTTCTAAAA
CTAAACTGAAAACATTTCGCCACCAGTGGTCTAAAGGCATGTAGTTTCTTTGGTACACTG
ACAGGTGATCTTGCCGGACCTGAAGACGTACCTGAAAACCTTAGCAGGCCAAGTAGTATG
GTTACTCCTGCTGCTGGATGAACACATCAATCCAGTGGTTCTGGACCAGCACGTATAGCA
TGTTTCAAGTTATCTAGCACCTTCAGTTTAATATCCTGATCTCTATCTTTCCCATAAGAA
AATTTCACATATGTTATACTCATATTATTTTTCCACATTATCTTTCCAGTATACATAGTT
TTATGGGACAATAAGACAGCAGGTGATCTACCTTTGATAAATAGACAGACCATCGATGAA
CAATGCACGAATGCACGTTGTGCATGCATGGTTGATCAACACTCAAGATCCATGTGTTCG
ACAATAAGTATGTCGAGACAAGTAATTGGAAGTTTTACCATGGACGCATGTATATATACT
ACTATATTAAAGCTACTAAGCTAGGAGTTTTCACGTGCGTTTGACATTGTGAATAACAAC
TCACCTTGGCTTGACACGTGTATCCCAATCTTTACTTTGATTCGCTCCAGGTTATTCACT
GGTTTTTATGTTTTGAGTCGTTTTGTTTTTTATCGCTTGATAGATATTTCACTCTTTTTT
TATGATTTTTTTATTTTTATTTTTTATTTATCTTTTGCAAGTTTATTTTCCTTCTCGAAC
AAATATTCAGAAATTCATAGAATGATCGCACTTTAGAATTTTTGTTTACTTTTCAAAAAA
TGTTTGTGTTTTAAATTTGGTTCGGAAAACCCAGAACAATATTCAAATATTGTTACCTTC
ATTTCAAAATTGTTTAAAAATACAAAAAAATTAGAATTTCATTTTTTTAAATGTTTTCAT
TTTTAACATAAGGGTTTCCACTCATTTCCTCCTCCCACCGTCCCATGTTTCCCTCCTCAT
TTTTAACTTAATGATTTAAGAATTATAGTCTATATGAAAAGACGAACGTTATATAAATCA
TTGCAACCAACTCGACGTCATCAAACCCATTGTCATTCCTTCTTCCGTGTTAAAATAAGA
AACAACATACATGAAAGCACGGGTTAAGCCATTGGCGCGGCGTGCCGCTGCGCCTTCCAC
CTGCTAGTACGCATTATATGGCGATGCAAAGTTCAATGGCGAGGGGCTTGCCGGGCTTAG
GTTGTCCATACTGATCTTGCATGAATTTTCTTTTGTGTTGCGATCCCCTTCCTTCAACTA
GTTTATCCGGGACTGCTGCATCCACATCAGCTCCTCTCTATACAACAATTCATTCATTAT
CCGTTAGATACTGTGTACGCCACGTAGGGAGGACATACATGTCAGATTTTGAACTTTATT
TTATATTTAGTCCCAACACTTCAACTCTAGCCATCCCATAATGATTACGTAAACTACATG
TTCGGTGTACCAAAGCTCGTAAAGAAGGTAGTGTCCCGCAAGAAAATGGAAGCTCGTAAG
AAGGTGATGGCATGATTCCGTGCCCAAGTGGCTGAAGTTAACTTAAATTAAAAGAAGAAG
AGCACATGCGTCCGACCTGTGCATCGGCCATCGGGGCATGCAGGCTCAACTTGCACCGCG
GGAGACTCAGAGGGTGCTTTAATATGTTTTAGTCTCATGACTAAAAGTAGTGGGACTAAA
ACTTATTAGCCCCATCCATGATTGGATTCAAATACTAAAAAGATTAAGATCAAGTTAATA
AGCATTTATTATCCTTCAAATCCTCCAATCTAGACTCGCCTGTGTTAAAGGAGAGGAGTT
AAATGAGAAGTGAGAGGACTAATCCAATTTTAATAGGGATACCCCTGACTAAAAAAATTT
AGTCTTAAGACTAGTTTTAACCCCTTTTTAATCGGGGATGCTTGAAACTTTAGCCTCTTA
AAACGGCTAAATTTAATCAGACTAAAATAAGTCTTTTGGATACAAACACCCACTTAACTT
GCACCGCGGGAGACTCAACTTGCACTAGAGCCAATCCTATGCAAGCTTGACTCAACTTGC
ACTAGAGCCAATCCTGTCCAAGCTTGATACAGTATGATATGATATGATATGGTACGGTAT
GGTGTGGGTCCATTATACAGTATGAACGAACGTAGCAGCGGTCTAGTCTCCGGTGGTATA
GAGTTTGTTAAATGAACACAAGCGGCATGGCGTACAACAAATATAATATACAGATAGGAG
TAACCACTCAAAAAAAATATAAACAGGAGTAGAACTACGCGTAGTATGAATGCATGCTTG
ATTGGTGATTGCTTCCAAGGCAGACCAGCTAAAATACCTCACGTCCATCACATACAGCAT
TCACTTCACGCACGATGGCTACATTCGTTAGTCTTCTGTTTCTTCTTCCGCTGCTGCGGT
CCTGTGCAGCATCGGCAGGAGTAGGACACACGCTGGGGTCCGGGTCATCCCTGTCCGTGG
AGGACCACGACCGGCCCTTCCTGGTGTCGCCGGACGCCACCTTCTCCTGCGGCTTCCTCC
CAGCCGGCGACGTCGGCAACGCCTTCTACTTCTCCGTCTGGTTCACCGCGGCAAAGGACA
GGACCGCCGTCTGGACGGCCAACCCCGGCGCCCCCGTGAACGGCCGGGTTTCTCGCATGT
CCTTTCGCGCCGACGGCAGGCTGGCCCTCGCCGATGCAAACGGGACGACCGTGTGGGACA
GCAAGAACGCCGGCAACAAGCACTTCACCGTCTCCCTCCTCGACACCGGCAATCTTGTTA
TCGCGGACCCGTCCTCCGGCCGTGCCGTTTGGGAGAGCTTCGGCTGGCCGACGGACACCC
TGCTCCCGTCGCAGCCGCTGACCAAGGACACGAAGCTCGTCGCCGGCTACTACTCCCTCT
ACTACGACAACGACAACGTGCTCCGGCTCTTGTATGACGGTCCGGAGATCGCCAGCATCT
ACTGGCCGGACCGGGACATAGGCGTGTTCAACAGCGGCCGGACCAACTACAACAGCTCAC
GCACCGGCGTCCTCGACGACAACGGCGTGTTCCTCTCCAGCGACAACCTGCGAGTCGAGG
CCTCCGACATGGGCGCCGCCGGCGTCAAGAGGCGGCTAACCATCGAGCAGGACGGGAACG
TGAGGATGTACAGCCTGGACGCGGCCGGAGGATGGACGGTCACGTGGGCTGCGGTGAAGC
AGCCTTGCTCCGTCCACGGGCTGTGCGGCAAGAACACCGTCTGCGATTACCAGCCGTTCC
TCCGATGCTCCTGCGCGCCGGGGTACGAGATGGTGGACCGCCGGGACTGGAGAAAGGGAT
GCAAGCCCACCTTCAGCCTCTCCACCACCAACTGCAGCACGTCGGAAAAGCAGTTCACGT
TCGTCAAGGTGGCGTCCACTGACTTCTACGGCTACGACATCGGGTACAACAAGTCCGTCT
CCTTCGAATACTGCAAGAGCCTCTGCTTGAGCATGTGCTCCTGCGCCGCCTTCGCCTACA
AGAGGAATGGCTATGGCGAATGCTACTTGAAAAGGGCCATGTTCAACGGTTACACGTCCC
CAACGGCCCCTGGAAACGTATATCTCAAGGTGTCTAGCGACCTCAACACGTCGGCACCGC
CGCCGTCCATGGTCCTCGACTGCAATCATAATGGCTCCGGTGCGGCCGTCGTCCAGCCAA
CATACGCCAACATGTACGGGGCACTAAGCAGCGGCCCAAACTTCTCCTACCTTTTCTGGT
TCGCCGGCGTGCTGGGATTTCTCGAGCTCCTCTTCATCGCGACCACGTGGTGGTTCCTGT
CAGGCCAGGAGAGCATACCCAGCTCGCTGGAGGCAGGCTACCGGCTGGTCATGGGCACCC
AGTTCAGGAGGTTCACGTATCAAGAGCTGAAGAAGGTGACTGGGAACTTCAACGAGGAGC
TCGGCCGCGGCGGCCCGGCGTGGTGTACCGCGGCGTGCTCGACAAGACCACCGTGGTGGC
GGTGAAGGAGCTGACAAACGTGGTGCAGGGCGACGAGGAATTCTGGGCGGAGATGACGGT
GTTCGGGAGGATCAACCACATCAATCTGGTGAGGATCTGGGGGTTCTGCTCCGAGGGCAA
GCACAAGCTGTTGGTGTACGAGTACGTGGAGAACCTGTCGCTGGACAGGCACCTGTTCGA
CGCGGACAACGGCAAGGCGCTGGCATGGAGAGAGCGGTTCAAGATCGCGTTGGGCACGGC
CAGGGGGCTCGCCTACCTCCACCACGAGTGCCTCGAGTGGGTCATCCACTGCGACGTCAA
GCCGGAGAACATCCTGCTCACCCGAGACCTTGACCCAAAGATCGCCGACTTCGGGCTGTC
CAAGCTGTCCGGGAGGAAAGCCGTCGGCGACGGCGTGCAGCTCTCCCATATGAGGGGGAC
GACGGGGTACATGGCGCCCGAGTGGGTGCTGGGCCTGCCGATCGACGCCAAGGTCGACGT
GTACAGCTACGGCGTCGTGCTTCTGGAGATCCTGATGGGAAGCAGGATCACCGAACAGAG
GACCGCGGACCGCCGGGAGCGGCTGCAGATGAGCCAGATCGCGCAGGCGCTGAAGCAGGT
GGTGGCGAATGGCGATGTGGTGCCATTGGTGGATAGCAGGCTGAATGGGCAGTTCAACCC
TCGACAGGCCATGGAAATGTTGAAGATCTCCTTGTCGTGCATGGAGGAGAGGAGCAACAG
GCCGGCCATGGATGACATCTTCAAGGCTCTTATAGCGTGCGATGACGAGGACGAACACCC
TGCCTACTTGTTGTGACTTGGATTCCTTGCCATATTGATTCGTTTATTTGAGTGCTGAAC
ATAAGAAAGCATGGTAAATGATATACATACACTGAATTGAACATGCGTGGTGTGAAAAGG
AAAGATTGCAGTTTTTTTGAACGAGAGGAAAGATTGCAGTTAGCCGTGCACTACTTGACT
ACAATTGATGTATCGTTTGCACCTACCCTACTTGCTTTCTGTAGTAGCTGGATTATTTTT
CGCGAAGCAGAGACCAAGGGTATGTGAGTGGTACTGTATTTGACAGACTAGGACGCGATT
GTTCTTGACGAGTCTCGCTTGGCACGCGGTAGCACGGAGCGGACTCGATGGGGACGTGCC
AATCATCGGCGACTGGGATGGTGAGTACTATGTCAAAATTCTACACGCCTCGACGACTAC
TTGGAATGGTGCAGGCCTGCAAAGTGCTTTAACGCAGAGGAAGAGCAGGCCTTCCTTGTA
CACGCCTTGGCTCTTTCGTGACGGGAACCGCAATGTTGGACTTGTTTTCTTTCTGTTATT
TTGAGAGAGACGCGCGCAATGTTGGACTTGTATATCCTTGATGATGATGATGTGACATGT
ATATCCTCTTCTCAATGAAATTCCTTCTCCTCAAAGCATCCACATTCGGACCTTGCAAAT
CCGGTCCTCAAACGTCGATGGACGCGCGCGGACACTGATCGATCACGTCTTAAATTTTTC
TCTTTACATCCAACTCTTTCGTATTTCATCCCTTACTTTCATACCCATGCATGCAACATC
ATCGTCGGAGATGGTCTGAGCCGCCCGTGCCGCTTGCATCTGCTGCCGATGAAGTCGTAT
GGCCTCCACAGCTGCCTTCGAGCGGTTGGAGTTCAAGATGGCCATCTTCTCGGGCCACAG
ATCCACGACCGTCGGCGCCTCCTCCTCCCCCACCTCCAGCGAAGGCGCCTCCTCCCCCGG
CTCCTGCTGATCCTCCCCCACAGCTAGCGGCGACGCCTCCTCCGCTGGATCACTGCTCCT
CCTCCTCTTCCACCCTCAACTTCTCCTCCTCTTCATCCTCCACCTCCTGGAAATCCTCCT
TCGGATCCAGAGGTGGCCCTGCCCCCCTTCAGATCCAGACCTGCTCAAGGAGCTAGAGAC
GGTGTTGGATTGTGTAGTGTCGGCGGTGTGGGGCATGGCTGATGGGGCGGGTGGCGCGAC
AGAAGGGAGGAGGTGGATGTGCTAAGACTGGGGGACATTGGTCGGCTTAAATAGCCGGCA
ACGGATAAGGGTGGGGAACCGGAGGGGCGCCACGCGACGTTCACACCGCGCCGATGGTCG
AGGCGTTCGTCGGACCGTCGAGTTTCCTAACGAGTCCGCATGGGGCCAAGCCGTCAGGCC
GACGAGGCGGGCGAGCCCGGGCTCCCCCATGTCCGCCCCATATTTGGGCAGGAAATGGGG
GGATGCACGTGAGCCCGGGCGTTTGAGGCCGACTTGAGAGGCACGTCTGGTCGCTTTATC
GTGACTGGACAATGACCGGGTGCCCTGCTCCTGGAGTTTGAGGGGTCCGGGTGTAGATAC
TCTCATCGCGTCATACTTTTTCGGCTTATAACTCTAGAGCCGAGTTGGCACCATCACCGA
TAGAAGAGTCTCGAACGATCATCAAGAAGAAGTTCACAGAAAGTTCTGTCCAATTCTAGA
AACTTTTAGTTATGCACAACAATAACACCAAGGTAGTTTTGCAGCAAACAACATCAGTCC
GGGTTAGCTTCATTTTAATCATGCAAATTAGAATCCAAAACAAGAGCAAAAGTGTTTGNN
NNNNTAGATATGTTTGAGACGTATCACCTATTCCCTTAACCACCTTACAACTTGGATTTA
CCAACTCCCCTCTCATGGCGCTAGGCTAACCCTCATCTCCTCGGTGACACTCTCTCCGTC
TATTTCATGTCGGTTCCATATCCCAAAAATAATCTTAAAAGAGTTTAACACAATCCGTAG
GTTCTTTTTAGGACTATAGAGTAAACATGCTCGAGGCTAAGTGCCTTATTGCTTCAAGAT
CTGTTTGCAAAACCCTAAAATTTGGTGGACTAGTGATACATCTCCGTCGTATCTACTTTT
CTGAACTCTTTTGTCTTTGTTTTGGACTCTAATTTGCATTATTTGAATGGAACTAACTCG
AACTGGCCTGTTTTCAGTAGAATTGTCATGGTGTTGTTNNNNNNNNNNNNNNNNNGTTCT
CGGAATGTCCTGAAAATTTTACGGAGAATTTTTCTGGAATAAAAGAAAAATATCTGCGCA
AAGATCCACCAGATGGGGC
